Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAACAAATTGGCAAATTGACCAACTCAAACATTTGGATTGATTCAAAAAACTATCCTAATTCAATCCTATCCAAACCATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGGTGAGTGAACAATTTCTTTTCGCTGATTTGAAAGATTTGAATTCTTGATGATCTGTTCTTCGTTTTTTATTTTCGTGTTAATCAACTCGATCTGTTCTTCGGTTGATTTTCGTGTTAATCTGTTCTTTTCGATCTGTTCTTCGGTTGCTTATTTTCAATGACTAAATCTATTCTTCGGTTGATTTGATTTTCGAGTTGATCTGTTCTTCGTTTACATATTTTGAATGATTTGTTTCAGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGTAAACTCCGATCTCTAAACTTCGAATCTATAATCGAAAGTAAAATCGATTTACGCATCTCTCAAATTGTTTCAGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGAAATCGTTCTTGATTTTGTCCTAATTTTTCGATTACTTCTTCTACTACTGTTCTTCATCAATTCAGTGATTCAAAGGAAGAAAAAGAAATTAATGTAATACCTCATTATGTTCTATGCTTTGAGTTGTAATCAATCTTCTTCTTCTTCTTCTTCACTTCATTTAATGTCTGAAAATGAAGAAATTTTGAAATCAATGTCTGTTCATGATTCTTCTCTCATCGCCA
mRNA sequence
GTTGAACAAATTGGCAAATTGACCAACTCAAACATTTGGATTGATTCAAAAAACTATCCTAATTCAATCCTATCCAAACCATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGAAATCGTTCTTGATTTTGTCCTAATTTTTCGATTACTTCTTCTACTACTGTTCTTCATCAATTCAGTGATTCAAAGGAAGAAAAAGAAATTAATGTAATACCTCATTATGTTCTATGCTTTGAGTTGTAATCAATCTTCTTCTTCTTCTTCTTCACTTCATTTAATGTCTGAAAATGAAGAAATTTTGAAATCAATGTCTGTTCATGATTCTTCTCTCATCGCCA
Coding sequence (CDS)
ATGTTCGACCCGACCCGACTCGACCCAACTAGGTGGCAATATTTGTCATTCCCTAACATAAAGGCAAGCAATACAAAAAAGAAAAGGTTAATATTAAATAAAGTAGCCGTTGGCGCCTGTCAACATTCAAATTCAAACCCTAAAAAAAACAAAAACAAAAACCAAATCCTTCCAAAACAAAAAAAAAAACCTCTGACTCTTCACTTTTCTATGCTCCATCCATTTCCAAACACAAAATTCTTCATCTCCACCAATATGCTGCAAGCTCTCCATCTTCCCTTAGCCACACCTCAAGATCTTCCTCTCAATTCCGGCCGCCGCCCGCTCCAACCGAAAAACTCCCTTCCAAATCCTCCACCTGCCGTCGCCAAAATCGCCAAATCCAACCCGGAACGGATCGGGATCTCTGGCGACGCGAACAAGGAGAATCAACCGCCGATTCAGAAAATCGAGTTGTGCGATTTGTCGCTGGCGGATGAACTCAGTGCGGTGAAGAAGAAGATCGAGAGGTTGAGATTGGACGGTGAACGAACCGAGAAGATGCTGAGAGAGAGGGATTTGGTGTTTGAGTTACGGATGAAGGAGATTTTGCAGAGAAGTCAGGAGCAGAGAGATCTGGAAATGGAGGTGGATCGGTTGTTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTCACCGATTCGAAGTCTGAGAGAGAAAGAGCGAGAGAAGATCTTCACCGACGCACAATTTCCGGAATTTGAGATCGGCGACGGAGAAGAATCGGTCGGCGAGAATTCATCGTTAGATTCATCAGAATTCGTCGCAGGTTTTTGA
Protein sequence
MFDPTRLDPTRWQYLSFPNIKASNTKKKRLILNKVAVGACQHSNSNPKKNKNKNQILPKQKKKPLTLHFSMLHPFPNTKFFISTNMLQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVAGF
Homology
BLAST of Sed0006435 vs. NCBI nr
Match:
KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 297.7 bits (761), Expect = 9.9e-77
Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL +P+D+PL SGRRPLQPKNSLPNP P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. NCBI nr
Match:
XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])
HSP 1 Score: 297.4 bits (760), Expect = 1.3e-76
Identity = 162/191 (84.82%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL P+DLPL SGRRPLQPKNSLPNP P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PP--IQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. NCBI nr
Match:
XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 293.9 bits (751), Expect = 1.4e-75
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL +P+D+PL SGRRPLQPKNSLPN P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. NCBI nr
Match:
XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])
HSP 1 Score: 293.1 bits (749), Expect = 2.4e-75
Identity = 161/197 (81.73%), Postives = 170/197 (86.29%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPER--IGISGDANKENQ 146
+Q LH PLATPQDLPL SGRRPLQPKNSLPN P+VAK KS PER I +SGDANKEN
Sbjct: 1 MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60
Query: 147 PPIQ--------KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEI 206
PPI IE CD SLADEL+AVK+K+ERLRLDGERTE+MLRERDLV ELRMKE+
Sbjct: 61 PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
Query: 207 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 266
LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEE 180
Query: 267 SVGENSSLDSSEFVAGF 274
SVGENSSLDS+ FV GF
Sbjct: 181 SVGENSSLDSAGFVTGF 197
BLAST of Sed0006435 vs. NCBI nr
Match:
XP_022978293.1 (high mobility group B protein 13-like [Cucurbita maxima])
HSP 1 Score: 288.9 bits (738), Expect = 4.6e-74
Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGIS--GDANKENQ 146
+QALH PLATP DLPL SGRRPLQPKNSLPNP PAVAK+ KS PERI IS DANKEN
Sbjct: 1 MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60
Query: 147 PPIQ----KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRS 206
PPI +E CDLSLADEL+AVK+K+ERLRL+ ERTE+ML+ERD++ ELRMKE+LQRS
Sbjct: 61 PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120
Query: 207 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 266
+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGE
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEESVGE 180
Query: 267 NSSLDSSEFVAGF 274
NSSLDSSEFV GF
Sbjct: 181 NSSLDSSEFVTGF 193
BLAST of Sed0006435 vs. ExPASy TrEMBL
Match:
A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)
HSP 1 Score: 297.7 bits (761), Expect = 4.8e-77
Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL +P+D+PL SGRRPLQPKNSLPNP P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. ExPASy TrEMBL
Match:
A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)
HSP 1 Score: 297.4 bits (760), Expect = 6.3e-77
Identity = 162/191 (84.82%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL P+DLPL SGRRPLQPKNSLPNP P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PP--IQKIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. ExPASy TrEMBL
Match:
A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)
HSP 1 Score: 293.9 bits (751), Expect = 7.0e-76
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL +P+D+PL SGRRPLQPKNSLPN P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. ExPASy TrEMBL
Match:
A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)
HSP 1 Score: 293.9 bits (751), Expect = 7.0e-76
Identity = 160/191 (83.77%), Postives = 171/191 (89.53%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPE--RIGISGDANKENQ 146
+Q LH PL +P+D+PL SGRRPLQPKNSLPN P+VAKI KS PE +I +SGDANKEN
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 147 PPIQ--KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQE 206
PP IE CDLSLADEL+AVK+K+ERLRLDGERTEKMLRERDLV ELRMKE+LQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 207 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 266
QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENS 180
Query: 267 SLDSSEFVAGF 274
SLDSSEFV GF
Sbjct: 181 SLDSSEFVTGF 191
BLAST of Sed0006435 vs. ExPASy TrEMBL
Match:
A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)
HSP 1 Score: 288.9 bits (738), Expect = 2.2e-74
Identity = 156/193 (80.83%), Postives = 170/193 (88.08%), Query Frame = 0
Query: 87 LQALHLPLATPQDLPLNSGRRPLQPKNSLPNPPPAVAKIAKSNPERIGIS--GDANKENQ 146
+QALH PLATP DLPL SGRRPLQPKNSLPNP PAVAK+ KS PERI IS DANKEN
Sbjct: 1 MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60
Query: 147 PPIQ----KIELCDLSLADELSAVKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRS 206
PPI +E CDLSLADEL+AVK+K+ERLRL+ ERTE+ML+ERD++ ELRMKE+LQRS
Sbjct: 61 PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120
Query: 207 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 266
+EQRDLEMEVDRLFRLKELR YCMRISPIRSLREKEREKIF DAQFPE+EIGDGEESVGE
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCMRISPIRSLREKEREKIFADAQFPEYEIGDGEESVGE 180
Query: 267 NSSLDSSEFVAGF 274
NSSLDSSEFV GF
Sbjct: 181 NSSLDSSEFVTGF 193
BLAST of Sed0006435 vs. TAIR 10
Match:
AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )
HSP 1 Score: 103.6 bits (257), Expect = 2.6e-22
Identity = 71/155 (45.81%), Postives = 92/155 (59.35%), Query Frame = 0
Query: 104 SGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSA 163
SGR+ LQP+N P + E++ KEN + D SLA+ELSA
Sbjct: 4 SGRKALQPRNIYQTPKEDAFFVKPKAAEKL-------KEN---LNLETSIDASLAEELSA 63
Query: 164 VKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYC 223
KKK+ERLR D E TEK+L+ERD +L M +LQR + Q+ LE++VDRLFRLKEL +Y
Sbjct: 64 FKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKELHAYS 123
Query: 224 MRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV 259
+ISPIRSLR KE+++ F E D E SV
Sbjct: 124 SKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSV 148
BLAST of Sed0006435 vs. TAIR 10
Match:
AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 101.3 bits (251), Expect = 1.3e-21
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 0
Query: 104 SGRRPLQPKNSLPNPPPAVAKIAKSNPERIGISGDANKENQPPIQKIELCDLSLADELSA 163
SGR+ LQP+N P + E++ KEN + D SLA+ELSA
Sbjct: 4 SGRKALQPRNIYQTPKEDAFFVKPKAAEKL-------KEN---LNLETSIDASLAEELSA 63
Query: 164 VKKKIERLRLDGERTEKMLRERDLVFELRMKEILQRSQEQRDLEMEVDRLFRLKELRSYC 223
KKK+ERLR D E TEK+L+ERD +L M +LQR + Q+ LE++VDRLFRLKEL +Y
Sbjct: 64 FKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKELHAYS 123
Query: 224 MRISPIRSLREKEREK 240
+ISPIRSLR KE+++
Sbjct: 124 SKISPIRSLRAKEQQE 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0025412.1 | 9.9e-77 | 84.29 | high mobility group B protein 6 [Cucumis melo var. makuwa] | [more] |
| XP_004142680.1 | 1.3e-76 | 84.82 | high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote... | [more] |
| XP_008463266.1 | 1.4e-75 | 83.77 | PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil... | [more] |
| XP_038883293.1 | 2.4e-75 | 81.73 | uncharacterized protein LOC120074285 [Benincasa hispida] | [more] |
| XP_022978293.1 | 4.6e-74 | 80.83 | high mobility group B protein 13-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SJQ2 | 4.8e-77 | 84.29 | High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A0A0L063 | 6.3e-77 | 84.82 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1 | [more] |
| A0A5D3CEI7 | 7.0e-76 | 83.77 | High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3CJ78 | 7.0e-76 | 83.77 | high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=... | [more] |
| A0A6J1ISM0 | 2.2e-74 | 80.83 | high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G01910.1 | 2.6e-22 | 45.81 | unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac... | [more] |
| AT5G01910.2 | 1.3e-21 | 47.79 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
