Sed0006380 (gene) Chayote v1

Overview


Name	Sed0006380
Type	gene
Organism	Sechium edule (Chayote v1)
Description	3R-hydroxymyristoyl-dehydratase-hydroxymyristoyl ACP dehydrase isoform 1
Location	LG10: 1420950 .. 1423767 (-)
RNA-Seq Expression	Sed0006380
Synteny	Sed0006380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTCTCCACAGTCCTAAATCCGCCATTTCCATTGGTAACCGATCTTAGGGTTCGTTCTTACCCTCTTTCGAATCATCATTCTTCAACATCTGCAAATTTGATCGTCTCTTCTACACGCCCTCGAAATTATCGCCTTGTCAAAGCCACAGCTGCGTCGTCCATGGAGGTCGAGCAAGGTGGAAAATCCGCAGCTGTTAGCGGCTCAGATCCGCCCATGAAGCTCTTGTTTGTCGAGATGGGTGTTGGCTACGATCAACACGGGTGAATTTTCAGCTCTTTTGTTTGTTACAAGTGTTAATTTCAGAAAAACAATTTGATTAACTAGTTGATACTGTTTTGCCACAGACAAGATGTTACGGCAGCTGCAATGCGGGCCTGCAGGGATGCCATATGTTCCAATTCGATTCCAGCATTCCGTAGAGGTTCGTCCCTGTGGTTTCATTATTTGCTTGATTGATCATGTTTGGTTTGCAGAAGATATGAGTTCCTGAATGTAGTTCGTTGTTCTTGGTAGCTTAAATTTAGGGGATTTTACATATATAGCAAAAAGAACAAAAAAAACCCCCACCAATAGCACTTTTTGAAATTGGCCTGAACCCTGTGAAATGTTCAAGATGTTCATACTTCAATCAGTTCAGCTGATGACCTTCAATCGATTCAATTGATAGCCTCCAATTAGTTTTCTGATAGCCTTCAATTAGTTCGTTGATAGCATCAATGAGGGCAAAATTAGAAGAAAAAAAAACTACCAAAATTTGCAATACATGTATTTTTATTTTTTTTTGAAATGCTATAATTATAAATGACAACAAAGAAGTTGCTATGTGGAGCAAATTCCCTAAAATTTATCTTCGAAAACTTGTATTCATCACTGATTAGAATTTAAGCCATGAAGTCTCTCCTTAACAGGCTGTCCCTGTCCTTTCTGCTAATTTAGGTTGGTAATACTTGAAGCCGTGCACTCTAGTTTCTATAAGTTAGTAACTTTCATTTAGGCATATAATGTATCCTGTTTTATTTGGTTAGAATAATCGTGTTATTGCAAAGTTCTGGATTGATTTTCGAGTTCAGAATCTCATTTATACAGTTACTTCAGGGTTCTGCAAATTAAGTTTATGCTGATAGATGTTGCTGCTTTTGTTGTGTTAATATTTCAAGGAGGACTAATGACTAGGTGTTATGTAGGTTCCATTCCTGGAGTCACATTTGGAGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGATATCGAAAAAGTCAAATCCGTGTTCCCATAGTAAGTGCTGAACTATTTTTGGTTGGATGACTAATATTATTGCGGAAAACGTCGAGCGCACTTTGTTTTGTCAAACTGCACCTTGAGTCTTAGGTCAGATTCAGTTTTTTTGATACAGATGCATGAATCAGCCTTTATAACTCTCATAACAGGAGGAATAAATTAAACTACTAGCTAAGCGGTTTTAACAAAACAATGAAACAGAGTGAGGGAACGGAAAAGTAACTAGGTTCAAAAGCAAATATAGTTAGCCATAGAGTCTTCTCGGCTATTAGAGAAGGCCAATTAGATTAAGATGCTGTGTTGGTTAGTACTTACTAGCTTGCTTTAACGTCCCCCCTAAACAGTAAGCTTGTGGGTGTTTCAATCACTCCAAGCTTCTCTGTAGGACGTAATTTTTTAGGCAGTGTGAGGTTGAGTGATTAGGCTTTGCAAATTTTGGCTTAATTTTTTTCACTAAGAATTTTCAATCGTGCATGTTAAGTCCTGCAGAGCCCTCTGTTGCTCTGATAGCTATTGAATCACTTTTCTATCCATGTTTACAAATTGAAATTTCTGATTCCTAGCTTATCAAAACTTGAATGGGACAAGCTTTCACCTCATACTATTTTAAATCGAAATGCGTCTTTTCTTACTTTCAGTACCAAAATGCAATTGAATTAATCAGCATCTTTCAAGGAAAAAAGTTCGAATAAAACCTGTAAGGAACCCTTTTATCCTTGTTTTTGTCATGCTCGATCGTCCTCTGGGTTCGCCACCACAATATCCTTCGAGCCTTTTCCAAGTTCTTCTGAGCTAATTGTGCTGCAACATCTTGAGTGAGATTGCTGTACTAGTACAACCAAGGACATGTTGATCATTAGTTTAGTAACTAACTCCGTCGATTTGGCTTCAAATTTTACTTTTCTCTTTGGATATTCATATTTCATTATCAAATCATAGTTTATTAGCCTCTTGCTTGCCTTCCTATTGGTCTTCCATTTCGATTTAGTACTCTAGGAGCCATTTATTTTGAAATACCATGTTAGTGAGAAAGATTGTGATAGGTTTGGGCCTTAATGAGGAATATATTTGGGACTTGTGTGCAATTTATTCAAGATTTAGTTACATATTATGGTTATAATGAGAGAGGGATGGTTAGTGAGGAGTTATCTTTGAATTGTATGAGAATTAGGGCTTGAGAGAACTCAAGAGTCAGGGAGGGTTCAAGTACCTTGAATCACTTGGCTTATCGTGTACGTTTGTGGTGGTTTGCTAATAGATAAATGTAGATTCTATCAGATTGTTTGAATTGACAAACATAATCTTCCACTGATCATAATGAACAGCTCCAAACTATCCTATTTAGCAGATGATTGAATCTTTCCATTATTTGATTTACTGCAGTGGAAAAATTTTGAATGTTGACGTTGTCGATGGTGGCTTAATATGCTCTAGCGGTGTGCTTGTGGAAGAAATGGGAGACAAAAATGATGAGTGTTACATAGTAAATGCTGCTGTTTATGTTGGCTACTAA

mRNA sequence

ATGGCAGTCTCCACAGTCCTAAATCCGCCATTTCCATTGGTAACCGATCTTAGGGTTCGTTCTTACCCTCTTTCGAATCATCATTCTTCAACATCTGCAAATTTGATCGTCTCTTCTACACGCCCTCGAAATTATCGCCTTGTCAAAGCCACAGCTGCGTCGTCCATGGAGGTCGAGCAAGGTGGAAAATCCGCAGCTGTTAGCGGCTCAGATCCGCCCATGAAGCTCTTGTTTGTCGAGATGGGTGTTGGCTACGATCAACACGGACAAGATGTTACGGCAGCTGCAATGCGGGCCTGCAGGGATGCCATATGTTCCAATTCGATTCCAGCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGAGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGATATCGAAAAAGTCAAATCCGTGTTCCCATATGGAAAAATTTTGAATGTTGACGTTGTCGATGGTGGCTTAATATGCTCTAGCGGTGTGCTTGTGGAAGAAATGGGAGACAAAAATGATGAGTGTTACATAGTAAATGCTGCTGTTTATGTTGGCTACTAA

Coding sequence (CDS)

ATGGCAGTCTCCACAGTCCTAAATCCGCCATTTCCATTGGTAACCGATCTTAGGGTTCGTTCTTACCCTCTTTCGAATCATCATTCTTCAACATCTGCAAATTTGATCGTCTCTTCTACACGCCCTCGAAATTATCGCCTTGTCAAAGCCACAGCTGCGTCGTCCATGGAGGTCGAGCAAGGTGGAAAATCCGCAGCTGTTAGCGGCTCAGATCCGCCCATGAAGCTCTTGTTTGTCGAGATGGGTGTTGGCTACGATCAACACGGACAAGATGTTACGGCAGCTGCAATGCGGGCCTGCAGGGATGCCATATGTTCCAATTCGATTCCAGCATTCCGTAGAGGTTCCATTCCTGGAGTCACATTTGGAGAGATGAAACTACAGATCAAACTTGGAGTTCCACAGTCTCTTCAACAATCCTTGGATATCGAAAAAGTCAAATCCGTGTTCCCATATGGAAAAATTTTGAATGTTGACGTTGTCGATGGTGGCTTAATATGCTCTAGCGGTGTGCTTGTGGAAGAAATGGGAGACAAAAATGATGAGTGTTACATAGTAAATGCTGCTGTTTATGTTGGCTACTAA

Protein sequence

MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQGGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGVTFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKNDECYIVNAAVYVGY

Homology

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BLAST of Sed0006380 vs. NCBI nr
Match: XP_023544561.1 (uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.1 bits (819), Expect = 1.3e-83
Identity = 168/194 (86.60%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S VLN  FP VTDLR RSYPLSN HSS+SA+LI S TRPR  RLVK TAASSMEVEQ
Sbjct: 1   MTGSIVLNLQFPRVTDLRFRSYPLSNRHSSSSAHLICSPTRPRISRLVKVTAASSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GGKSA V GS PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGKSAPV-GSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           TF EMKLQIKLGVP SLQQSLDIEKVKSVFPYGKI+NV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 TFAEMKLQIKLGVPHSLQQSLDIEKVKSVFPYGKIMNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. NCBI nr
Match: XP_022925764.1 (uncharacterized protein LOC111433074 [Cucurbita moschata] >KAG6581352.1 hypothetical protein SDJN03_21354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 168/194 (86.60%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S VLN  FP VTDLR RSYPLSN HSS+SA+LI S TRP   RLVK TAASSMEVEQ
Sbjct: 1   MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GGKSA V GS PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGKSAPV-GSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           TFGEMKLQIKLGVP SLQQSLDIEKVKSVFPYGKI+NV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 TFGEMKLQIKLGVPHSLQQSLDIEKVKSVFPYGKIMNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. NCBI nr
Match: XP_038883708.1 (uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida])

HSP 1 Score: 305.1 bits (780), Expect = 4.4e-79
Identity = 162/194 (83.51%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S VLNP F  VTD R RSY LSN + S SA+LI S TRPR  RLVK TA SSMEVEQ
Sbjct: 3   MTGSIVLNPQFCCVTDFRFRSYSLSN-YLSPSAHLICSLTRPRISRLVKVTAVSSMEVEQ 62

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GGKSA    + PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 63  GGKSAPAGSTVPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 122

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           TFGEMKLQIKLGVP SLQQSLDIEKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDKN
Sbjct: 123 TFGEMKLQIKLGVPVSLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKN 182

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 183 DDCYIVNAAVYVGY 195

[Close]

BLAST of Sed0006380 vs. NCBI nr
Match: XP_004134667.1 (uncharacterized protein LOC101216458 isoform X1 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 158/194 (81.44%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S +LN  F  +TD R RSY LSNH SS S +LI S TRPR  RL+K TA SSMEVEQ
Sbjct: 1   MTSSILLNLQFLSITDSRFRSYSLSNHLSS-SPHLICSLTRPRISRLIKVTAVSSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GG+SA V  + PPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGESAPVDSTVPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           +FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 SFGEMKLQIKLGVPHSLQQSLDLEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. NCBI nr
Match: XP_008439752.1 (PREDICTED: uncharacterized protein LOC103484457 isoform X1 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 5.4e-77
Identity = 157/194 (80.93%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S +LN  F  +TD R RSYP SNH SS   +LI S TRPR  RL+K TA SSMEVEQ
Sbjct: 1   MTGSILLNLQFLSLTDSRFRSYPFSNHLSS-FPHLICSLTRPRISRLIKVTAVSSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GG+SA V  + PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGESAPVDSTVPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           +FGEMKLQIKLGVP SLQQSLDIEKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 SFGEMKLQIKLGVPHSLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. ExPASy TrEMBL
Match: A0A6J1ED44 (uncharacterized protein LOC111433074 OS=Cucurbita moschata OX=3662 GN=LOC111433074 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.4e-84
Identity = 168/194 (86.60%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S VLN  FP VTDLR RSYPLSN HSS+SA+LI S TRP   RLVK TAASSMEVEQ
Sbjct: 1   MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GGKSA V GS PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGKSAPV-GSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           TFGEMKLQIKLGVP SLQQSLDIEKVKSVFPYGKI+NV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 TFGEMKLQIKLGVPHSLQQSLDIEKVKSVFPYGKIMNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. ExPASy TrEMBL
Match: A0A0A0KNJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519490 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 9.0e-78
Identity = 158/194 (81.44%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S +LN  F  +TD R RSY LSNH SS S +LI S TRPR  RL+K TA SSMEVEQ
Sbjct: 1   MTSSILLNLQFLSITDSRFRSYSLSNHLSS-SPHLICSLTRPRISRLIKVTAVSSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GG+SA V  + PPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGESAPVDSTVPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           +FGEMKLQIKLGVP SLQQSLD+EKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 SFGEMKLQIKLGVPHSLQQSLDLEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. ExPASy TrEMBL
Match: A0A1S3B079 (uncharacterized protein LOC103484457 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484457 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.6e-77
Identity = 157/194 (80.93%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S +LN  F  +TD R RSYP SNH SS   +LI S TRPR  RL+K TA SSMEVEQ
Sbjct: 1   MTGSILLNLQFLSLTDSRFRSYPFSNHLSS-FPHLICSLTRPRISRLIKVTAVSSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GG+SA V  + PPMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGESAPVDSTVPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKN 180
           +FGEMKLQIKLGVP SLQQSLDIEKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDKN
Sbjct: 121 SFGEMKLQIKLGVPHSLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDKN 180

Query: 181 DECYIVNAAVYVGY 195
           D+CYIVNAAVYVGY
Sbjct: 181 DDCYIVNAAVYVGY 193

[Close]

BLAST of Sed0006380 vs. ExPASy TrEMBL
Match: A0A6J1CMQ6 (uncharacterized protein LOC111012382 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012382 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.6e-77
Identity = 156/195 (80.00%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSN-HHSSTSANLIVSSTRPRNYRLVKATAASSMEVE 60
           M  S V+N PFP   +LR RSY  SN + SS+SA+ + S TRP   RL+KATAASSMEVE
Sbjct: 1   MTGSIVVNVPFPWAIELRFRSYLHSNKNRSSSSAHFLCSLTRPPISRLIKATAASSMEVE 60

Query: 61  QGGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPG 120
           +GG+SAAV  +  PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAI SNSIPAFRRGSIPG
Sbjct: 61  EGGRSAAVGSTASPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAISSNSIPAFRRGSIPG 120

Query: 121 VTFGEMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDK 180
           VTF +MKLQIKLGVPQ+LQQSLDIEKVKSVFPYGKILNV+VVDGGLICSSGV VEEMGDK
Sbjct: 121 VTFDQMKLQIKLGVPQTLQQSLDIEKVKSVFPYGKILNVEVVDGGLICSSGVHVEEMGDK 180

Query: 181 NDECYIVNAAVYVGY 195
           ND+CYIVNAAVYVGY
Sbjct: 181 NDDCYIVNAAVYVGY 195

[Close]

BLAST of Sed0006380 vs. ExPASy TrEMBL
Match: A0A6J1ILT2 (uncharacterized protein LOC111477623 OS=Cucurbita maxima OX=3661 GN=LOC111477623 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.7e-73
Identity = 162/228 (71.05%), Postives = 168/228 (73.68%), Query Frame = 0


Query: 1   MAVSTVLNPPFPLVTDLRVRSYPLSNHHSSTSANLIVSSTRPRNYRLVKATAASSMEVEQ 60
           M  S VLN  FP VTDLR RSYPLSN HSS+SA+LI S TRPR  RLVK TAASSMEVEQ
Sbjct: 1   MTGSIVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPRISRLVKVTAASSMEVEQ 60

Query: 61  GGKSAAVSGSDPPMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGV 120
           GGKSA V GS  PMKLLFVEMGVGYDQHGQD+TAAAMRACRDAI SNSIPAFRRGSIPGV
Sbjct: 61  GGKSAPV-GSTAPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPAFRRGSIPGV 120

Query: 121 TFGEMKLQIKLGVPQSLQQSLD---------------------------IEKVKSVF--- 180
           TFGEMKLQIKLGVP SLQQSLD                            E+  S     
Sbjct: 121 TFGEMKLQIKLGVPHSLQQSLDAFCSFLCRLDFKSRVIYRGFTLTTTISFERFPSSSQLL 180

Query: 181 ----PYGKILNVDVVDGGLICSSGVLVEEMGDKNDECYIVNAAVYVGY 195
               P GKI+NVDVVDGGLICSSGV VEEMGDKND+CYIVNAAVYVGY
Sbjct: 181 VLQPPDGKIMNVDVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY 227

[Close]

BLAST of Sed0006380 vs. TAIR 10
Match: AT1G29040.1 (unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). )

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-58
Identity = 119/191 (62.30%), Postives = 144/191 (75.39%), Query Frame = 0


Query: 13  LVTDLRVRSYPLSNHHSSTSANLIVSSTR-------PRNYRLVKATAASSMEVEQGGKSA 72
           +  +LR+R  P     SS+    + S ++       P+  R +K  A S+ME      + 
Sbjct: 12  ICAELRLRQSPSCLTISSSRPKFLSSRSKQFSLDHFPQISRPIKVIARSAMET----TAE 71

Query: 73  AVSGSDP--PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGVTFG 132
            ++G  P   MKLLFVEMGVGYDQHGQDVT+AAM+AC++AI SNSIPAFRRGSIPGV+FG
Sbjct: 72  TITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGSIPGVSFG 131

Query: 133 EMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKNDEC 192
           EMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NV+VVDGGLICSSGVLVEEMGD N++C
Sbjct: 132 EMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGGLICSSGVLVEEMGDTNEDC 191

Query: 193 YIVNAAVYVGY 195
           YIVN AVYVGY
Sbjct: 192 YIVNVAVYVGY 198

[Close]

BLAST of Sed0006380 vs. TAIR 10
Match: AT1G29040.4 (unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). )

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-58
Identity = 119/191 (62.30%), Postives = 144/191 (75.39%), Query Frame = 0


Query: 13  LVTDLRVRSYPLSNHHSSTSANLIVSSTR-------PRNYRLVKATAASSMEVEQGGKSA 72
           +  +LR+R  P     SS+    + S ++       P+  R +K  A S+ME      + 
Sbjct: 12  ICAELRLRQSPSCLTISSSRPKFLSSRSKQFSLDHFPQISRPIKVIARSAMET----TAE 71

Query: 73  AVSGSDP--PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGVTFG 132
            ++G  P   MKLLFVEMGVGYDQHGQDVT+AAM+AC++AI SNSIPAFRRGSIPGV+FG
Sbjct: 72  TITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGSIPGVSFG 131

Query: 133 EMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKNDEC 192
           EMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NV+VVDGGLICSSGVLVEEMGD N++C
Sbjct: 132 EMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGGLICSSGVLVEEMGDTNEDC 191

Query: 193 YIVNAAVYVGY 195
           YIVN AVYVGY
Sbjct: 192 YIVNVAVYVGY 198

[Close]

BLAST of Sed0006380 vs. TAIR 10
Match: AT1G29040.2 (unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 190 Blast hits to 190 proteins in 92 species: Archae - 2; Bacteria - 141; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 189.1 bits (479), Expect = 3.3e-48
Identity = 107/191 (56.02%), Postives = 130/191 (68.06%), Query Frame = 0


Query: 13  LVTDLRVRSYPLSNHHSSTSANLIVSSTR-------PRNYRLVKATAASSMEVEQGGKSA 72
           +  +LR+R  P     SS+    + S ++       P+  R +K  A S+ME      + 
Sbjct: 12  ICAELRLRQSPSCLTISSSRPKFLSSRSKQFSLDHFPQISRPIKVIARSAMET----TAE 71

Query: 73  AVSGSDP--PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGSIPGVTFG 132
            ++G  P   MKLLFVEMGVGYDQHGQDVT+AAM+AC               SIPGV+FG
Sbjct: 72  TITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKAC---------------SIPGVSFG 131

Query: 133 EMKLQIKLGVPQSLQQSLDIEKVKSVFPYGKILNVDVVDGGLICSSGVLVEEMGDKNDEC 192
           EMKLQIKLGVP SL Q LD++KVKS+FPYGKI+NV+VVDGGLICSSGVLVEEMGD N++C
Sbjct: 132 EMKLQIKLGVPHSLHQQLDLDKVKSIFPYGKIVNVEVVDGGLICSSGVLVEEMGDTNEDC 183

Query: 193 YIVNAAVYVGY 195
           YIVN AVYVGY
Sbjct: 192 YIVNVAVYVGY 183

[Close]

BLAST of Sed0006380 vs. TAIR 10
Match: AT1G29040.3 (unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-17
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 13  LVTDLRVRSYPLSNHHSSTSANLIVSSTR-------PRNYRLVKATAASSMEVEQGGKSA 72
           +  +LR+R  P     SS+    + S ++       P+  R +K  A S+ME      + 
Sbjct: 12  ICAELRLRQSPSCLTISSSRPKFLSSRSKQFSLDHFPQISRPIKVIARSAMET----TAE 71

Query: 73  AVSGSDP--PMKLLFVEMGVGYDQHGQDVTAAAMRACRDAICSNSIPAFRRGS 117
            ++G  P   MKLLFVEMGVGYDQHGQDVT+AAM+AC++AI SNSIPAFRRG+
Sbjct: 72  TITGGVPNNTMKLLFVEMGVGYDQHGQDVTSAAMKACKNAISSNSIPAFRRGT 120

The following BLAST results are available for this feature:

BLAST of Sed0006380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544561.1	1.3e-83	86.60	uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]	[more]
XP_022925764.1	1.7e-83	86.60	uncharacterized protein LOC111433074 [Cucurbita moschata] >KAG6581352.1 hypothet...	[more]
XP_038883708.1	4.4e-79	83.51	uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]	[more]
XP_004134667.1	1.9e-77	81.44	uncharacterized protein LOC101216458 isoform X1 [Cucumis sativus]	[more]
XP_008439752.1	5.4e-77	80.93	PREDICTED: uncharacterized protein LOC103484457 isoform X1 [Cucumis melo]	[more]

BLAST of Sed0006380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED44	8.4e-84	86.60	uncharacterized protein LOC111433074 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A0A0KNJ4	9.0e-78	81.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519490 PE=4 SV=1	[more]
A0A1S3B079	2.6e-77	80.93	uncharacterized protein LOC103484457 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CMQ6	7.6e-77	80.00	uncharacterized protein LOC111012382 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ILT2	8.7e-73	71.05	uncharacterized protein LOC111477623 OS=Cucurbita maxima OX=3661 GN=LOC111477623...	[more]

BLAST of Sed0006380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29040.1	2.1e-58	62.30	unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant struct...	[more]
AT1G29040.4	2.1e-58	62.30	unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP0...	[more]
AT1G29040.2	3.3e-48	56.02	unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant struct...	[more]
AT1G29040.3	3.0e-17	46.90	unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant struct...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011719	Conserved hypothetical protein CHP02058	PFAM	PF09585	Lin0512_fam	coord: 77..192 e-value: 4.6E-39 score: 133.0
IPR011719	Conserved hypothetical protein CHP02058	TIGRFAM	TIGR02058	TIGR02058	coord: 75..194 e-value: 5.5E-54 score: 179.1
IPR011719	Conserved hypothetical protein CHP02058	PANTHER	PTHR34784	50S RIBOSOMAL PROTEIN L34	coord: 20..194
IPR037103	Tubulin/FtsZ-like, C-terminal domain	GENE3D	3.30.1330.20		coord: 72..193 e-value: 3.4E-42 score: 145.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006380.1	Sed0006380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005525	GTP binding