Sed0006375 (gene) Chayote v1

Overview


Name	Sed0006375
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GTP-binding nuclear protein
Location	LG08: 5144304 .. 5147460 (+)
RNA-Seq Expression	Sed0006375
Synteny	Sed0006375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAACGGGCATAAAACCTAAATCGCCGATTCATTTCTCATTCACATTTCCGATTTCTTTCGCTCCCAACTCTCCATCCAACGCGTTTCAATGGTGAGTTTCATCGTCTTTCTCAGCTGAATGGAATCTCCATTGATCTTGTATTTCAGTTTTCTTTTGAATTTTGTAGGCTTTGCCGAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTGCTTGTTGGCGATGGTGGCACTGGTATTTCCTTGTTTATCAGCTTTCTTTTACAGTAATTTTCTATTGCGAATTCTCCTTGTATGGACCAGATGGTTATTTAGTCGATGCATTAGGGAAAATGGTTCTTGTTCTAGGTGTCGTTATTTTGAATGAGTCTAGAAGGTAGAAAATTGTAAGTTCATGAAGTACTGGAGAAGAGCCTTTGATCGGAAGGCGGAAAAGAGAATGTGAGAGTGAGGGGGAGATAGGACGACGAATCTAACCGGATCTTCACATTGTATGATATTGTGGCTTTGTTTTTGGTTTCACCCAAAAGCCCTTGTATCAATGGATCATCACAATGGAGATGTTTTCCTCCTCTCTTGTAAACCCATGATCTTCCCTTTATTTACCCACTTTGTTTGTATTCTCAACATATACTGTCGTAGGTTTTTGTTTATCCAGTTTGATATGCCTATCCCTCTTTAGTCTTGAGGATATAAGTTGTGCAAGATCTAAATGGGTTCAAGTTTAATCCCATGAGTGTCCCCAAGGGTGGCACAATGGTTAAAGGATTGAGTTTTATAGGTATGCTTCCCAAGCCTACAAGAGGTGTGCTACCCTCAAGGTCCGAGTTTCAAGATTCACCTATAAGCTATAACATTAATTTGTATATACCTCCCATTTTTCCATTTCTTTGATGTCTCCCGGTGCTTGCTTTTGGGCAAGGTGGAGCAAAACTTCGATTTCCTAGTTTTTAAAAAAATATTAATCACACGAGTCTCTCTGGCAGCATTGTCAAATATGGTTGCTTTTTTTTTTTTTTGTTGTATGTCTGTCTTTCGCTTTCTAAACTCACACATGTCGCTGGCCCTTTGTGTGGTATTCATGAGCGCTCTTATTATCTGTGGAAATAAATCGAATTTTTAGATGCCAATCCATAACATATTAATTAGAAGATACAGAAAAGGAAGAAAAACATTATGGAGATTATACATAGGGATGTAAGAAGGATCACTTTCAATGCCTTTTTAAGTCTTGATATTGAGTGCATAGCTGACTTGTTGGTATATTGTTGACCAGGGAAGACCACTTTCGTGAAGAGACATGTCACTGGGGAGTTTGAAAAGAAATATGAACGTAAGCGTCGACAATATGTTTCCGCTATGATGGTTTATTCAATTTATTGTGCTGTGTGGATATTTTATTTTCTATTGTAAAAAATCCTTTTGTTGTTTTCATGGAATCAGCTACCATTGGTGTGGAGGTGCACCCACTTGACTTCTTCACGAATTGTGGAAAAATTAGATTTTACTGCTGGGACACTGCTGGACAAGAGAAGTTTGGTGGTCTGCGTGATGGTTATTAGTAAGTAAAGTGGAGAATGAATGCTTTGATTCTTTTGGATGTATTATTCATGCGTATGTGTTCCCAGTTAGACTCTGTTTTCTCACATTTTTCTAGGATCTGTTTTTAAGATGAATTTATCTTCCTTTTTAGGTAGGTCTTTTCTGTCTACTCCGAGCTTGAATGGAAACTTATATAACTTATTATACGTAGTTCGTTTTGTAACCTTGTTGAGTTCTCAATATTCTATTGGTCTTTGGACTGCTTTTAGCCTAGATGTTTATTTTTTTCTTTGATGGACTTTACATTTCCCCTCGTGATCTTCTGAATCAAACTTCTTTCTGCTATCATCAAAATTTATATTGTACTGTTTTTGTCCATAATTGCAGCATCCATGGGCAATGTGCGATCATTATGTTTGATGTTACAGCCAGATTGACATACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGTGACCTATTGATTGTTTGTACTTAAAGTTTTCTATTAATGGTACACTCCCGGAACATATGATGATAATTTCTTCTCCCAATTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAGGTTACATTCCACAGGAAGAAGAATCTACAATACTACGAAATTTCTGCGAAGAGCAACTACAACTTCGAGAAACCATTCTTGTACCTGGCCCGGAAATTAGCTGGGTAATCTAAGTTGCCTGTTTGCTGTACTCTGATATCTTAAAAATGTTTTCATTCATGGCAAGTGGTTTCCTTTTTCTTATGGTTTCTACATTCATATAGGGATGCCAACATTCATTTTGTGGAGTCTCCTGCCCTTGCTCCTCCAGAAGTACAGATTGACTTGGCAGTCCAGCAACAGTAAGACATTCTTATCGTACAACACATAAACCAATGGACCATAAACATTCTTTTTGAGTATCCATGTTCATTTGTTGCTCGTTTTATGCAGGCATGAAGCTGAATTGTTACAAGCTGCCAATCAACCTCTGCCCGACGATGACGACGATGCATTTGAGTAGAGATGCGTGGGTTGATCTGATCATCTGGTGATGTTTTTCTTACCAGATATCTTTATTTTCTTCTTTTTCCCTGAGTGATCTCGTTGCTGGGATTGACATGAGGCAATAGAGGTGAGTTTGGATGTGGGGGTAGGTATTTGATGATATAGGTTTGAGTTTTGAAAACGTCAAGTTTTCCCTGAACAAAAATGAATTTGGTGTTGATGATTGGTTTTATTTTATGTGAGTGAATTGAGTATTTGATCAATGTAATGGTGTGGATGGATTAAACGTTGCAGTATTTGGGTTGAGTTAATTGCTTTCTTTATCCTTATTCATCCTGGGATTCTTTTGAGTCGAACGAATGCTTTATATATTCTCTGTTCTGTTTTGTTGGCATTTTGTGGAGAGCTATCTGATTTGTTTTCTCAACATCTGATCTCGAGTGTGCTTCCCTCAAGGTCTTGGGTTTGAAAACTTACATGTAACATTAATTTGTAGATACTTTTCGTGTCTCTATTTCTTGGATGTTTCCCTGGCTTAAGGAT

mRNA sequence

CCCAAAACGGGCATAAAACCTAAATCGCCGATTCATTTCTCATTCACATTTCCGATTTCTTTCGCTCCCAACTCTCCATCCAACGCGTTTCAATGGCTTTGCCGAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTGCTTGTTGGCGATGGTGGCACTGGGAAGACCACTTTCGTGAAGAGACATGTCACTGGGGAGTTTGAAAAGAAATATGAACCTACCATTGGTGTGGAGGTGCACCCACTTGACTTCTTCACGAATTGTGGAAAAATTAGATTTTACTGCTGGGACACTGCTGGACAAGAGAAGTTTGGTGGTCTGCGTGATGGTTATTACATCCATGGGCAATGTGCGATCATTATGTTTGATGTTACAGCCAGATTGACATACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAGGTTACATTCCACAGGAAGAAGAATCTACAATACTACGAAATTTCTGCGAAGAGCAACTACAACTTCGAGAAACCATTCTTGTACCTGGCCCGGAAATTAGCTGGGGATGCCAACATTCATTTTGTGGAGTCTCCTGCCCTTGCTCCTCCAGAAGTACAGATTGACTTGGCAGTCCAGCAACAGCATGAAGCTGAATTGTTACAAGCTGCCAATCAACCTCTGCCCGACGATGACGACGATGCATTTGAGTAGAGATGCGTGGGTTGATCTGATCATCTGGTGATGTTTTTCTTACCAGATATCTTTATTTTCTTCTTTTTCCCTGAGTGATCTCGTTGCTGGGATTGACATGAGGCAATAGAGGTGAGTTTGGATGTGGGGGTAGGTATTTGATGATATAGGTTTGAGTTTTGAAAACGTCAAGTTTTCCCTGAACAAAAATGAATTTGGTGTTGATGATTGGTTTTATTTTATGTGAGTGAATTGAGTATTTGATCAATGTAATGGTGTGGATGGATTAAACGTTGCAGTATTTGGGTTGAGTTAATTGCTTTCTTTATCCTTATTCATCCTGGGATTCTTTTGAGTCGAACGAATGCTTTATATATTCTCTGTTCTGTTTTGTTGGCATTTTGTGGAGAGCTATCTGATTTGTTTTCTCAACATCTGATCTCGAGTGTGCTTCCCTCAAGGTCTTGGGTTTGAAAACTTACATGTAACATTAATTTGTAGATACTTTTCGTGTCTCTATTTCTTGGATGTTTCCCTGGCTTAAGGAT

Coding sequence (CDS)

ATGGCTTTGCCGAATCAGCAGACCGTGGATTACCCGAGCTTCAAGCTCGTGCTTGTTGGCGATGGTGGCACTGGGAAGACCACTTTCGTGAAGAGACATGTCACTGGGGAGTTTGAAAAGAAATATGAACCTACCATTGGTGTGGAGGTGCACCCACTTGACTTCTTCACGAATTGTGGAAAAATTAGATTTTACTGCTGGGACACTGCTGGACAAGAGAAGTTTGGTGGTCTGCGTGATGGTTATTACATCCATGGGCAATGTGCGATCATTATGTTTGATGTTACAGCCAGATTGACATACAAAAACGTTCCTACATGGCACCGTGATCTTTGCAGGGTGTGTGAGAATATTCCCATTGTTCTTTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAGGCCAAGCAGGTTACATTCCACAGGAAGAAGAATCTACAATACTACGAAATTTCTGCGAAGAGCAACTACAACTTCGAGAAACCATTCTTGTACCTGGCCCGGAAATTAGCTGGGGATGCCAACATTCATTTTGTGGAGTCTCCTGCCCTTGCTCCTCCAGAAGTACAGATTGACTTGGCAGTCCAGCAACAGCATGAAGCTGAATTGTTACAAGCTGCCAATCAACCTCTGCCCGACGATGACGACGATGCATTTGAGTAG

Protein sequence

MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE

Homology

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BLAST of Sed0006375 vs. NCBI nr
Match: AEK84227.1 (GTP-binding protein [Cucurbita maxima])

HSP 1 Score: 459.9 bits (1182), Expect = 1.2e-125
Identity = 219/221 (99.10%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQ QHEAEL QAANQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQAQHEAELQQAANQPLPDDDDDAFE 221

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BLAST of Sed0006375 vs. NCBI nr
Match: XP_022932841.1 (GTP-binding nuclear protein Ran-3 [Cucurbita moschata] >KAG6587907.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 457.6 bits (1176), Expect = 6.1e-125
Identity = 217/221 (98.19%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQQQHEAEL  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. NCBI nr
Match: XP_023531727.1 (GTP-binding nuclear protein Ran-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.2 bits (1175), Expect = 7.9e-125
Identity = 216/221 (97.74%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLA+QQQHEAEL  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAIQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. NCBI nr
Match: XP_022932839.1 (GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_023531726.1 GTP-binding nuclear protein Ran-3-like [Cucurbita pepo subsp. pepo] >KAG6587908.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.0e-124
Identity = 217/221 (98.19%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQ+TVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQKTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQQQHEAEL  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. NCBI nr
Match: KAD5508449.1 (hypothetical protein E3N88_16152 [Mikania micrantha])

HSP 1 Score: 456.1 bits (1172), Expect = 1.8e-124
Identity = 214/221 (96.83%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQID+A+QQQHEAEL QA NQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDMAIQQQHEAELEQAKNQPLPDDDDDAFE 221

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BLAST of Sed0006375 vs. ExPASy Swiss-Prot
Match: P38548 (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 8.8e-127
Identity = 212/221 (95.93%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQID+A+QQ+HE E+L+AANQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy Swiss-Prot
Match: Q8H156 (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 SV=2)

HSP 1 Score: 452.6 bits (1163), Expect = 2.6e-126
Identity = 213/221 (96.38%), Postives = 217/221 (98.19%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLA QQQHEAEL  AA+QPLPDDDDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy Swiss-Prot
Match: P38546 (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 2.4e-124
Identity = 210/221 (95.02%), Postives = 214/221 (96.83%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEV IDLA Q  HE EL QAANQPLPDDDD+AFE
Sbjct: 181 ESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy Swiss-Prot
Match: P41919 (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum OX=4097 GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 2.4e-124
Identity = 211/221 (95.48%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLA QQ HE ELLQAA   LPDDDD+AFE
Sbjct: 181 ESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy Swiss-Prot
Match: P41916 (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana OX=3702 GN=RAN1 PE=1 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 9.1e-124
Identity = 209/221 (94.57%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           E+PALAPPEV ID+A QQ++EAELLQAA QPLPDDDDD FE
Sbjct: 181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy TrEMBL
Match: G0ZS06 (GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 PE=2 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 5.9e-126
Identity = 219/221 (99.10%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQ QHEAEL QAANQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQAQHEAELQQAANQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy TrEMBL
Match: A0A6J1EXI0 (GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111439353 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 2.9e-125
Identity = 217/221 (98.19%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQQQHEAEL  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy TrEMBL
Match: A0A6J1EY53 (GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111439342 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.0e-125
Identity = 217/221 (98.19%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQ+TVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQKTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLAVQQQHEAEL  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAVQQQHEAELAAAASQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy TrEMBL
Match: A0A5N6NY11 (GTP-binding nuclear protein OS=Mikania micrantha OX=192012 GN=E3N88_16152 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 8.6e-125
Identity = 214/221 (96.83%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQID+A+QQQHEAEL QA NQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDMAIQQQHEAELEQAKNQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. ExPASy TrEMBL
Match: A0A251SRM4 (GTP-binding nuclear protein OS=Helianthus annuus OX=4232 GN=RAN PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 8.6e-125
Identity = 214/221 (96.83%), Postives = 218/221 (98.64%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQID+  QQQHEAEL QAANQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDIVAQQQHEAELAQAANQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. TAIR 10
Match: AT5G55190.1 (RAN GTPase 3 )

HSP 1 Score: 452.6 bits (1163), Expect = 1.8e-127
Identity = 213/221 (96.38%), Postives = 217/221 (98.19%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDAN+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEVQIDLA QQQHEAEL  AA+QPLPDDDDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

[Close]

BLAST of Sed0006375 vs. TAIR 10
Match: AT5G20010.1 (RAS-related nuclear protein-1 )

HSP 1 Score: 444.1 bits (1141), Expect = 6.5e-125
Identity = 209/221 (94.57%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           E+PALAPPEV ID+A QQ++EAELLQAA QPLPDDDDD FE
Sbjct: 181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

[Close]

BLAST of Sed0006375 vs. TAIR 10
Match: AT5G20020.1 (RAS-related GTP-binding nuclear protein 2 )

HSP 1 Score: 443.7 bits (1140), Expect = 8.5e-125
Identity = 208/221 (94.12%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLV+VGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD N+HFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 222
           ESPALAPPEV +D+A QQQ+EA+L  AA QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

[Close]

BLAST of Sed0006375 vs. TAIR 10
Match: AT5G55080.1 (ras-related nuclear protein 4 )

HSP 1 Score: 312.0 bits (798), Expect = 3.8e-85
Identity = 147/212 (69.34%), Postives = 174/212 (82.08%), Query Frame = 0


Query: 1   MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQ VD P+FKL++VGDGGTGKTTF+KRH+TGEFE   EPT+GV+++PLDFFTN G
Sbjct: 1   MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPI
Sbjct: 61  KIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFV 180
           VLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGDA + FV
Sbjct: 121 VLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFV 180

Query: 181 ESPALAPPEVQIDLAVQQQHEAELLQAANQPL 213
           ES     PE QID    +  +   ++A  QPL
Sbjct: 181 ES-----PEAQIDNLDVESLQLLTVEAGTQPL 207

[Close]

BLAST of Sed0006375 vs. TAIR 10
Match: AT4G39890.1 (RAB GTPase homolog H1C )

HSP 1 Score: 104.8 bits (260), Expect = 9.3e-23
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 14  FKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE
Sbjct: 10  FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VK 133
           +F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+
Sbjct: 70  RFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVE 129

Query: 134 NRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 174
            RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct: 130 KRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173

The following BLAST results are available for this feature:

BLAST of Sed0006375 vs. NCBI nr


Match Name	E-value	Identity	Description
AEK84227.1	1.2e-125	99.10	GTP-binding protein [Cucurbita maxima]	[more]
XP_022932841.1	6.1e-125	98.19	GTP-binding nuclear protein Ran-3 [Cucurbita moschata] >KAG6587907.1 GTP-binding...	[more]
XP_023531727.1	7.9e-125	97.74	GTP-binding nuclear protein Ran-3 [Cucurbita pepo subsp. pepo]	[more]
XP_022932839.1	1.0e-124	98.19	GTP-binding nuclear protein Ran-3-like [Cucurbita moschata] >XP_023531726.1 GTP-...	[more]
KAD5508449.1	1.8e-124	96.83	hypothetical protein E3N88_16152 [Mikania micrantha]	[more]

BLAST of Sed0006375 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38548	8.8e-127	95.93	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1	[more]
Q8H156	2.6e-126	96.38	GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 S...	[more]
P38546	2.4e-124	95.02	GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV...	[more]
P41919	2.4e-124	95.48	GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum OX=4097 GN=RAN-B1 PE=2 S...	[more]
P41916	9.1e-124	94.57	GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana OX=3702 GN=RAN1 PE=1 S...	[more]

BLAST of Sed0006375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G0ZS06	5.9e-126	99.10	GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 PE=2 SV=1	[more]
A0A6J1EXI0	2.9e-125	98.19	GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111439353 PE=3 S...	[more]
A0A6J1EY53	5.0e-125	98.19	GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111439342 PE=3 S...	[more]
A0A5N6NY11	8.6e-125	96.83	GTP-binding nuclear protein OS=Mikania micrantha OX=192012 GN=E3N88_16152 PE=3 S...	[more]
A0A251SRM4	8.6e-125	96.83	GTP-binding nuclear protein OS=Helianthus annuus OX=4232 GN=RAN PE=3 SV=1	[more]

BLAST of Sed0006375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55190.1	1.8e-127	96.38	RAN GTPase 3	[more]
AT5G20010.1	6.5e-125	94.57	RAS-related nuclear protein-1	[more]
AT5G20020.1	8.5e-125	94.12	RAS-related GTP-binding nuclear protein 2	[more]
AT5G55080.1	3.8e-85	69.34	ras-related nuclear protein 4	[more]
AT4G39890.1	9.3e-23	36.59	RAB GTPase homolog H1C	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002041	Ran GTPase	PRINTS	PR00627	GTPRANTC4	coord: 74..92 score: 89.88 coord: 94..115 score: 86.19 coord: 130..148 score: 81.38 coord: 168..190 score: 74.92 coord: 27..41 score: 89.23
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 1..221
IPR002041	Ran GTPase	PROSITE	PS51418	RAN	coord: 7..171 score: 30.119534
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..174 e-value: 2.0E-28 score: 110.4
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..174 e-value: 5.7E-18 score: 75.7
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..220 e-value: 5.6E-165 score: 564.1
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 1..221
None	No IPR available	PROSITE	PS51419	RAB	coord: 8..210 score: 19.855659
None	No IPR available	CDD	cd00877	Ran	coord: 14..179 e-value: 1.74691E-132 score: 367.397
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..170 e-value: 8.6E-9 score: -6.1
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..171 e-value: 2.1E-50 score: 170.5
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 5..205 score: 10.177493
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 4..219 e-value: 4.7E-69 score: 233.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..192
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 14..164 e-value: 7.7E-24 score: 82.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006375.1	Sed0006375.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding