Sed0006323 (gene) Chayote v1

Overview


Name	Sed0006323
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 42018326 .. 42018895 (+)
RNA-Seq Expression	Sed0006323
Synteny	Sed0006323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAACAAGAACCAGTTTCTTGTTTGGTCTCTTGGTGTTTCTCTGCTTAAGTCTCAGCTCTGCAAATCGAGTTCTCAAAGTGAGCAATGCTGAAAAGGAATCGATAAGTAACAGTGCATCTTCTGGGCACAATGATCAACTTGAAAATTTCAGCCATGCTGACCTAAACAGTAGCAAAATGCTAAAAGGTAGCATACCAAAGTATGTTTCGGTTGGTCCAACGAGTGGCGACTGCTGCAACTATGACCATTGTGGTGAAAATGTGTGTCCTCCCAGCTACAGTTGTGGTGGAAACTGTGGTTGTCCATCCTATCACAATTGTCCATGGCAGGGATGCCAAGGATATCAAGGGTGCCAGGGATGCCAAGGATGCCAGGCGTGCCAACCTCCGCCCTGTGACTATAAAGTCGGTGTTGAGAGCTCTAAGGTCAAAGAATCGATTCAAATAGCCGAACCTGATCTAGATCCACCTTCATCCTTCCACCAAGCCCAGCCAGGAAATCATAACTTAAAATCCAGTGGGGGAGCAAATCAGGAAACTAAATCCAATGGCGGTCTAGTTTAG

mRNA sequence

ATGGCTTTAACAAGAACCAGTTTCTTGTTTGGTCTCTTGGTGTTTCTCTGCTTAAGTCTCAGCTCTGCAAATCGAGTTCTCAAAGTGAGCAATGCTGAAAAGGAATCGATAAGTAACAGTGCATCTTCTGGGCACAATGATCAACTTGAAAATTTCAGCCATGCTGACCTAAACAGTAGCAAAATGCTAAAAGGTAGCATACCAAAGTATGTTTCGGTTGGTCCAACGAGTGGCGACTGCTGCAACTATGACCATTGTGGTGAAAATGTGTGTCCTCCCAGCTACAGTTGTGGTGGAAACTGTGGTTGTCCATCCTATCACAATTGTCCATGGCAGGGATGCCAAGGATATCAAGGGTGCCAGGGATGCCAAGGATGCCAGGCGTGCCAACCTCCGCCCTGTGACTATAAAGTCGGTGTTGAGAGCTCTAAGGTCAAAGAATCGATTCAAATAGCCGAACCTGATCTAGATCCACCTTCATCCTTCCACCAAGCCCAGCCAGGAAATCATAACTTAAAATCCAGTGGGGGAGCAAATCAGGAAACTAAATCCAATGGCGGTCTAGTTTAG

Coding sequence (CDS)

ATGGCTTTAACAAGAACCAGTTTCTTGTTTGGTCTCTTGGTGTTTCTCTGCTTAAGTCTCAGCTCTGCAAATCGAGTTCTCAAAGTGAGCAATGCTGAAAAGGAATCGATAAGTAACAGTGCATCTTCTGGGCACAATGATCAACTTGAAAATTTCAGCCATGCTGACCTAAACAGTAGCAAAATGCTAAAAGGTAGCATACCAAAGTATGTTTCGGTTGGTCCAACGAGTGGCGACTGCTGCAACTATGACCATTGTGGTGAAAATGTGTGTCCTCCCAGCTACAGTTGTGGTGGAAACTGTGGTTGTCCATCCTATCACAATTGTCCATGGCAGGGATGCCAAGGATATCAAGGGTGCCAGGGATGCCAAGGATGCCAGGCGTGCCAACCTCCGCCCTGTGACTATAAAGTCGGTGTTGAGAGCTCTAAGGTCAAAGAATCGATTCAAATAGCCGAACCTGATCTAGATCCACCTTCATCCTTCCACCAAGCCCAGCCAGGAAATCATAACTTAAAATCCAGTGGGGGAGCAAATCAGGAAACTAAATCCAATGGCGGTCTAGTTTAG

Protein sequence

MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSSKMLKGSIPKYVSVGPTSGDCCNYDHCGENVCPPSYSCGGNCGCPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKVKESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV

Homology

[Close]

BLAST of Sed0006323 vs. NCBI nr
Match: KAG6591970.1 (hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 6.5e-35
Identity = 107/219 (48.86%), Postives = 138/219 (63.01%), Query Frame = 0


Query: 1   MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSS 60
           MA+T+ SFL GLL FLCLSLSSANRVLK ++AEKE ++N+ SS  ++QL++F++A+L S 
Sbjct: 1   MAVTKNSFLVGLLAFLCLSLSSANRVLKNNDAEKELLNNNVSSEQDNQLQDFNNAELKS- 60

Query: 61  KMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSCGG-----NCG---------- 120
            + +G++PK  SVG   GDC   C     G    PP+Y  GG     N G          
Sbjct: 61  -IPEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQP 120

Query: 121 CPSYHNCPWQGCQGYQGCQGCQ--------GCQACQP--PPCDYKVG-VESSKVK-ESIQ 180
           C +Y  CPWQGC G+QGCQGCQ        GCQ CQ   PPC ++VG V  SK++ ESI 
Sbjct: 121 CYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSKIQDESIP 180

Query: 181 IAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV 190
           + E + +PP       P NH++KSSGGANQ+ KSNGGLV
Sbjct: 181 MGE-EPEPP-----VLPENHHIKSSGGANQDMKSNGGLV 211

[Close]

BLAST of Sed0006323 vs. NCBI nr
Match: XP_023535133.1 (mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-34
Identity = 108/226 (47.79%), Postives = 139/226 (61.50%), Query Frame = 0


Query: 1   MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSS 60
           MA+T++SFL GLL FLCLSLSSANRVLK ++AEKE +SN+ SS  ++QL++F++A+L S 
Sbjct: 1   MAVTKSSFLVGLLAFLCLSLSSANRVLKNNDAEKELLSNNVSSEQDNQLQDFNNAELKS- 60

Query: 61  KMLKGSIPKYVSVGPTSGDC---CNYDHCGENVCPPSYSCGG-----NCG---------- 120
            + +G++PK  SVG   GDC   C     G    PP+Y  GG     N G          
Sbjct: 61  -IPEGNVPKLSSVGSGYGDCGGNCGSSGGGGYTYPPNYGSGGGSSPPNYGSGGGSSGCQP 120

Query: 121 CPSYHNCPWQGCQGYQGCQGCQ---------------GCQACQP--PPCDYKVG-VESSK 180
           C +Y  CPWQGC G+QGCQGCQ               GCQ CQ   PPC ++VG V  SK
Sbjct: 121 CYTYSPCPWQGCPGFQGCQGCQGGCQGCQGGCQGCQGGCQGCQAPHPPCTFEVGTVNDSK 180

Query: 181 VK-ESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV 190
           ++ ESI + E + +PP       P NH++KSSGGANQ+ KSNGGLV
Sbjct: 181 IQDESIPMGE-EPEPP-----VLPENHHIKSSGGANQDMKSNGGLV 218

[Close]

BLAST of Sed0006323 vs. NCBI nr
Match: KAG6607873.1 (hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-30
Identity = 93/190 (48.95%), Postives = 120/190 (63.16%), Query Frame = 0


Query: 1   MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSS 60
           MA+T+ S L  LL+ LCLS SSANRVLK +++E ESI+NS S G   +L NF HA+LN+ 
Sbjct: 7   MAVTKDSILVSLLMLLCLSHSSANRVLKDNDSENESINNSVSFGQEYELHNFIHAELNNI 66

Query: 61  KMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGGNCGCPSYHNCPWQGCQGYQG 120
            + +GSIPK+ S      DCCN+ +H G  VCPP+++CG N GC  Y++C    CQ ++ 
Sbjct: 67  -VPEGSIPKFRSY----RDCCNHGNHGGGYVCPPNHACGRNSGCRPYYSC--SPCQWWR- 126

Query: 121 CQGCQGCQACQPPPCDYKVGVESSKVKESIQIAEPDLDPPSSFHQAQPGNHNLKSSGGAN 180
                      PPPC   VG   S V+ESIQ +E DLD   +    +P NHN+K SGGAN
Sbjct: 127 -------YPVLPPPCGCAVGKSYSMVQESIQTSEADLD--GNVPAVEPANHNIKFSGGAN 179

Query: 181 QETKSNGGLV 190
           Q  KSNGGLV
Sbjct: 187 QNMKSNGGLV 179

[Close]

BLAST of Sed0006323 vs. NCBI nr
Match: KGN55137.1 (hypothetical protein Csa_012773 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 91/225 (40.44%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 1   MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSS 60
           MA+TRTS L GLL FLCLSL SANR+LK ++AE + I +   SG  +  +N +H +L S 
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS- 60

Query: 61  KMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGGNCG----------------- 120
            +   S+ K  S+ P +GDCC+Y  +CG    PP+  CGG CG                 
Sbjct: 61  -IPTDSMAKISSINPINGDCCSYGTNCG-IYPPPTCGCGG-CGGCSGCSGGGGGGCSGCS 120

Query: 121 -------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KES 180
                        C +  +C WQGC G Q CQGCQGCQ+     C  +  ++ SKV ++S
Sbjct: 121 GGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQS-----CGCQASMDDSKVEQDS 180

Query: 181 IQIAEP----DLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV 190
           +Q  EP     + PP     A+P ++++KSSGG+NQ+ KSNGGLV
Sbjct: 181 VQTGEPAPVVTIVPP-----AKPTDNDIKSSGGSNQDIKSNGGLV 211

[Close]

BLAST of Sed0006323 vs. ExPASy TrEMBL
Match: A0A0A0L3F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-26
Identity = 91/225 (40.44%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 1   MALTRTSFLFGLLVFLCLSLSSANRVLKVSNAEKESISNSASSGHNDQLENFSHADLNSS 60
           MA+TRTS L GLL FLCLSL SANR+LK ++AE + I +   SG  +  +N +H +L S 
Sbjct: 1   MAVTRTSLLVGLLAFLCLSLGSANRILKNNDAENQLIGDDVPSGKENHPQNSNHDELKS- 60

Query: 61  KMLKGSIPKYVSVGPTSGDCCNY-DHCGENVCPPSYSCGGNCG----------------- 120
            +   S+ K  S+ P +GDCC+Y  +CG    PP+  CGG CG                 
Sbjct: 61  -IPTDSMAKISSINPINGDCCSYGTNCG-IYPPPTCGCGG-CGGCSGCSGGGGGGCSGCS 120

Query: 121 -------------CPSYHNCPWQGCQGYQGCQGCQGCQACQPPPCDYKVGVESSKV-KES 180
                        C +  +C WQGC G Q CQGCQGCQ+     C  +  ++ SKV ++S
Sbjct: 121 GGGGGGGSSSCQSCNTCSSCQWQGCHGCQECQGCQGCQS-----CGCQASMDDSKVEQDS 180

Query: 181 IQIAEP----DLDPPSSFHQAQPGNHNLKSSGGANQETKSNGGLV 190
           +Q  EP     + PP     A+P ++++KSSGG+NQ+ KSNGGLV
Sbjct: 181 VQTGEPAPVVTIVPP-----AKPTDNDIKSSGGSNQDIKSNGGLV 211

The following BLAST results are available for this feature:

BLAST of Sed0006323 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591970.1	6.5e-35	48.86	hypothetical protein SDJN03_14316, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023535133.1	1.5e-34	47.79	mesenchyme-specific cell surface glycoprotein-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607873.1	4.8e-30	48.95	hypothetical protein SDJN03_01215, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN55137.1	1.6e-25	40.44	hypothetical protein Csa_012773 [Cucumis sativus]	[more]

BLAST of Sed0006323 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F6	7.8e-26	40.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G637770 PE=4 SV=1	[more]

BLAST of Sed0006323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006323.1	Sed0006323.1	mRNA