Sed0006238 (gene) Chayote v1

Overview


Name	Sed0006238
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Coiled-coil domain-containing protein 86
Location	LG11: 31231989 .. 31233413 (+)
RNA-Seq Expression	Sed0006238
Synteny	Sed0006238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGCACCATCGATTTCCGCCGCCTGGACGAAGGTTTCGGGGGGAAAACCTACAAGAGAAAGCGCGAAGAAGCTCAGAACAGCCTCACCACAGCCGATTCTGAGAATGCCGACGCCGCAATGGACATCGACGACTCGGTTCCGCCGCCATCCAAGCGATCCGCCGTTCCTTCGTCGGATAATCACGACAAACCGACCTACGGAAACCCTAGCTACGACGGCGTCATCGCTGGCAGGGTCTCCGGGCGGAACTGGAAGCAGCCGCGGAAGCACAGGGCGTCTGCGATGCAAGTGAGCCGCAAAGGCACGACGTTCGAGGAGAGGGAGAAGCAGAAGATGATCAAGGCGGCGTTCAGGGAGCGGAAGGAGGAGTTGAAGGAGCAGATCAGGACGAACAAGGTGGAGAAGAGGAAGAAGAGGGAGGAGAGAGAGAAGAAGAAGAAGGAAAACATTTTGAGATCTGGAACTAAGCTACAGAAAATCACTAACCCCAAGACATTGAAGAAGATTGCCAAATCCAAGCAGAAGAAGCTCCTCAAGGTGGTTCCTGATGATTACATCAAGAAATAGGTCCGTTGCTTCTGTTCTCAGCTCATCTTCTGTGTTTTCTCACCATCTTTTTAGTATCATAGATAGATTTATATGTTTTTCATTAAATTTTGGAATTTTGGCCGAATTTTCTGTATGATTGGTTTGAAATGCAATATAGTTAAGGAAAGAAATTCTAATTTCTTGCTTTCTTTTAAACGTTCTTGAATTGGTATTGCTCAGTTAAAAATCAGAATGGCTAACTACAATTTTCATTCTCAAAACTACAGACGATATTTTTTATCATCAAATACAAATATAGTGATCATACTTAAACTTCAGACTATATTATCGCATGTTTTTTTACAAAAAACATATTATCACATTTTAGTCATTGTAGCTTACTGTTTATCCAATCCAATCTTTAACTGATCATTAATATATTGTTGAATGAAAATCACAAGTGGGTTGGGATCTCTTTTTTGAGAGTAAGAAATCAATAAAAAAAACGAATGATGAACTCTGGAAATTTGTTAAGTCATATGGGATAAGTAATTGAACTTCATCATTTGGGTACAGGGTTTGCAGCCAAGTTCTCGAGTATTAAATTGTTGGGAAAATTGCAAGAACCACTCGTAGCAATCCTAAACTTTTATTTCGATCAATTACCCCCTAAATTTAATAATTATTGCAAATGGCCTTTTATAAAAAAAAAGAAAAAGAAAAAGAAAAGTGGTCTTCTTTCTCAATCTTCATGCTTTTAATCTCATCCTCCCAAATTGATTTCCATAGATGTGAATCCAACAATGAGGTATTGATGAAGGTATAGGAGGAGAAAACTTTTATTATTAATCGCAATGTTATTCTTCCTTTCTTTCTTAAATTAGACATAGG

mRNA sequence

ATGGCGTGCACCATCGATTTCCGCCGCCTGGACGAAGGTTTCGGGGGGAAAACCTACAAGAGAAAGCGCGAAGAAGCTCAGAACAGCCTCACCACAGCCGATTCTGAGAATGCCGACGCCGCAATGGACATCGACGACTCGGTTCCGCCGCCATCCAAGCGATCCGCCGTTCCTTCGTCGGATAATCACGACAAACCGACCTACGGAAACCCTAGCTACGACGGCGTCATCGCTGGCAGGGTCTCCGGGCGGAACTGGAAGCAGCCGCGGAAGCACAGGGCGTCTGCGATGCAAGTGAGCCGCAAAGGCACGACGTTCGAGGAGAGGGAGAAGCAGAAGATGATCAAGGCGGCGTTCAGGGAGCGGAAGGAGGAGTTGAAGGAGCAGATCAGGACGAACAAGGTGGAGAAGAGGAAGAAGAGGGAGGAGAGAGAGAAGAAGAAGAAGGAAAACATTTTGAGATCTGGAACTAAGCTACAGAAAATCACTAACCCCAAGACATTGAAGAAGATTGCCAAATCCAAGCAGAAGAAGCTCCTCAAGGTGGTTCCTGATGATTACATCAAGAAATAGGGTTTGCAGCCAAGTTCTCGAGTATTAAATTGTTGGGAAAATTGCAAGAACCACTCGTAGCAATCCTAAACTTTTATTTCGATCAATTACCCCCTAAATTTAATAATTATTGCAAATGGCCTTTTATAAAAAAAAAGAAAAAGAAAAAGAAAAGTGGTCTTCTTTCTCAATCTTCATGCTTTTAATCTCATCCTCCCAAATTGATTTCCATAGATGTGAATCCAACAATGAGGTATTGATGAAGGTATAGGAGGAGAAAACTTTTATTATTAATCGCAATGTTATTCTTCCTTTCTTTCTTAAATTAGACATAGG

Coding sequence (CDS)

ATGGCGTGCACCATCGATTTCCGCCGCCTGGACGAAGGTTTCGGGGGGAAAACCTACAAGAGAAAGCGCGAAGAAGCTCAGAACAGCCTCACCACAGCCGATTCTGAGAATGCCGACGCCGCAATGGACATCGACGACTCGGTTCCGCCGCCATCCAAGCGATCCGCCGTTCCTTCGTCGGATAATCACGACAAACCGACCTACGGAAACCCTAGCTACGACGGCGTCATCGCTGGCAGGGTCTCCGGGCGGAACTGGAAGCAGCCGCGGAAGCACAGGGCGTCTGCGATGCAAGTGAGCCGCAAAGGCACGACGTTCGAGGAGAGGGAGAAGCAGAAGATGATCAAGGCGGCGTTCAGGGAGCGGAAGGAGGAGTTGAAGGAGCAGATCAGGACGAACAAGGTGGAGAAGAGGAAGAAGAGGGAGGAGAGAGAGAAGAAGAAGAAGGAAAACATTTTGAGATCTGGAACTAAGCTACAGAAAATCACTAACCCCAAGACATTGAAGAAGATTGCCAAATCCAAGCAGAAGAAGCTCCTCAAGGTGGTTCCTGATGATTACATCAAGAAATAG

Protein sequence

MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVPSSDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAFRERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLLKVVPDDYIKK

Homology

[Close]

BLAST of Sed0006238 vs. NCBI nr
Match: XP_022141739.1 (protein PXR1 [Momordica charantia] >XP_022141740.1 protein PXR1 [Momordica charantia] >XP_022141741.1 protein PXR1 [Momordica charantia])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 172/192 (89.58%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRK--REEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVP 60
           MACTIDFR LDEGFGGKTYKRK  REEAQNSL   DSENADA+M+ID+S PPP+KRSA+P
Sbjct: 1   MACTIDFRCLDEGFGGKTYKRKREREEAQNSLNINDSENADASMEIDESFPPPAKRSAIP 60

Query: 61  SSDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA 120
           SS+N DKPT+GNP+YDGVIAG+VSGR WKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA
Sbjct: 61  SSENPDKPTFGNPTYDGVIAGKVSGRKWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA 120

Query: 121 FRERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK 180
           FRERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK
Sbjct: 121 FRERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK 180

Query: 181 LLKVVPDDYIKK 191
           LLKVVPDD+IKK
Sbjct: 181 LLKVVPDDFIKK 192

[Close]

BLAST of Sed0006238 vs. NCBI nr
Match: XP_008465532.1 (PREDICTED: protein PXR1 [Cucumis melo] >KAA0066071.1 protein PXR1 [Cucumis melo var. makuwa] >TYJ99826.1 protein PXR1 [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 3.9e-80
Identity = 169/191 (88.48%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSV-PPPSKRSAVPS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD AM+IDDS+ PPP+KRSA+PS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLIITESENADTAMEIDDSLPPPPAKRSAIPS 60

Query: 61  SDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAF 120
           S+N DKPTYGNP+YDGVIAG+VSGR WKQPRKHR SAMQVSRKGTTFEERE+QKMIKAAF
Sbjct: 61  SENPDKPTYGNPTYDGVIAGKVSGRKWKQPRKHRTSAMQVSRKGTTFEERERQKMIKAAF 120

Query: 121 RERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180
           +ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL
Sbjct: 121 KERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180

Query: 181 LKVVPDDYIKK 191
           LKVVP+DYIKK
Sbjct: 181 LKVVPEDYIKK 191

[Close]

BLAST of Sed0006238 vs. NCBI nr
Match: XP_038874831.1 (protein PXR1 [Benincasa hispida])

HSP 1 Score: 307.8 bits (787), Expect = 6.7e-80
Identity = 167/190 (87.89%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVPSS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD +M+IDDS+PPPSKRSA+PSS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLNITESENADTSMEIDDSLPPPSKRSAIPSS 60

Query: 61  DNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAFR 120
           +N DKPT+ NP+YDGVIAG+VSGR WKQPRKHR SAMQVSRKGTTFEERE+QK IKAAFR
Sbjct: 61  ENPDKPTFENPTYDGVIAGKVSGRKWKQPRKHRTSAMQVSRKGTTFEERERQKKIKAAFR 120

Query: 121 ERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180
           ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL
Sbjct: 121 ERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180

Query: 181 KVVPDDYIKK 191
           KVVP+DYIKK
Sbjct: 181 KVVPEDYIKK 190

[Close]

BLAST of Sed0006238 vs. NCBI nr
Match: XP_004143761.1 (protein PXR1 [Cucumis sativus] >KGN51128.1 hypothetical protein Csa_009132 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.8e-78
Identity = 166/191 (86.91%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSV-PPPSKRSAVPS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD  M+IDDS+ PPP+KRSA+PS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLIITESENADTGMEIDDSLPPPPAKRSAIPS 60

Query: 61  SDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAF 120
           S+N DKPTYGNP+YDGVI G+VSGR WKQ RKHR SAMQVSRKGTTFEERE+QKMIKAAF
Sbjct: 61  SENPDKPTYGNPTYDGVIGGKVSGRKWKQARKHRTSAMQVSRKGTTFEERERQKMIKAAF 120

Query: 121 RERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180
           +ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL
Sbjct: 121 KERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180

Query: 181 LKVVPDDYIKK 191
           LKVVP+DYIKK
Sbjct: 181 LKVVPEDYIKK 191

[Close]

BLAST of Sed0006238 vs. NCBI nr
Match: XP_022939634.1 (protein PXR1 [Cucurbita moschata] >XP_023550361.1 protein PXR1 [Cucurbita pepo subsp. pepo] >KAG6579102.1 hypothetical protein SDJN03_23550, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.4e-77
Identity = 164/190 (86.32%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVPSS 60
           MACTIDFRRLDEGFGGKTYKRKREEA++SL    SENADA+MD+D+S+ PP KRSA+PSS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAESSLNIISSENADASMDVDESL-PPLKRSAIPSS 60

Query: 61  DNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAFR 120
           +N DKPT+GNP+YDGVIAG+VSGR WKQPRKHR SAM VSRKGTTFEERE+QKMIKAA+R
Sbjct: 61  ENPDKPTFGNPTYDGVIAGKVSGRKWKQPRKHRTSAMLVSRKGTTFEERERQKMIKAAYR 120

Query: 121 ERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180
           ERKEELKEQIR+NKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL
Sbjct: 121 ERKEELKEQIRSNKVEKRKKKEEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180

Query: 181 KVVPDDYIKK 191
           KVVP+DYIKK
Sbjct: 181 KVVPEDYIKK 189

[Close]

BLAST of Sed0006238 vs. ExPASy TrEMBL
Match: A0A6J1CIY7 (Coiled-coil domain-containing protein 86 OS=Momordica charantia OX=3673 GN=LOC111012023 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.5e-81
Identity = 172/192 (89.58%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRK--REEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVP 60
           MACTIDFR LDEGFGGKTYKRK  REEAQNSL   DSENADA+M+ID+S PPP+KRSA+P
Sbjct: 1   MACTIDFRCLDEGFGGKTYKRKREREEAQNSLNINDSENADASMEIDESFPPPAKRSAIP 60

Query: 61  SSDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA 120
           SS+N DKPT+GNP+YDGVIAG+VSGR WKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA
Sbjct: 61  SSENPDKPTFGNPTYDGVIAGKVSGRKWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAA 120

Query: 121 FRERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK 180
           FRERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK
Sbjct: 121 FRERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKK 180

Query: 181 LLKVVPDDYIKK 191
           LLKVVPDD+IKK
Sbjct: 181 LLKVVPDDFIKK 192

[Close]

BLAST of Sed0006238 vs. ExPASy TrEMBL
Match: A0A5D3BKZ5 (Coiled-coil domain-containing protein 86 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00280 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.9e-80
Identity = 169/191 (88.48%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSV-PPPSKRSAVPS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD AM+IDDS+ PPP+KRSA+PS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLIITESENADTAMEIDDSLPPPPAKRSAIPS 60

Query: 61  SDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAF 120
           S+N DKPTYGNP+YDGVIAG+VSGR WKQPRKHR SAMQVSRKGTTFEERE+QKMIKAAF
Sbjct: 61  SENPDKPTYGNPTYDGVIAGKVSGRKWKQPRKHRTSAMQVSRKGTTFEERERQKMIKAAF 120

Query: 121 RERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180
           +ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL
Sbjct: 121 KERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180

Query: 181 LKVVPDDYIKK 191
           LKVVP+DYIKK
Sbjct: 181 LKVVPEDYIKK 191

[Close]

BLAST of Sed0006238 vs. ExPASy TrEMBL
Match: A0A1S3CP36 (Coiled-coil domain-containing protein 86 OS=Cucumis melo OX=3656 GN=LOC103503157 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.9e-80
Identity = 169/191 (88.48%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSV-PPPSKRSAVPS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD AM+IDDS+ PPP+KRSA+PS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLIITESENADTAMEIDDSLPPPPAKRSAIPS 60

Query: 61  SDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAF 120
           S+N DKPTYGNP+YDGVIAG+VSGR WKQPRKHR SAMQVSRKGTTFEERE+QKMIKAAF
Sbjct: 61  SENPDKPTYGNPTYDGVIAGKVSGRKWKQPRKHRTSAMQVSRKGTTFEERERQKMIKAAF 120

Query: 121 RERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180
           +ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL
Sbjct: 121 KERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180

Query: 181 LKVVPDDYIKK 191
           LKVVP+DYIKK
Sbjct: 181 LKVVPEDYIKK 191

[Close]

BLAST of Sed0006238 vs. ExPASy TrEMBL
Match: A0A0A0KNG5 (Coiled-coil domain-containing protein 86 OS=Cucumis sativus OX=3659 GN=Csa_5G458280 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.4e-78
Identity = 166/191 (86.91%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSV-PPPSKRSAVPS 60
           MACTIDFRRLDEGFGGKTYKRKREEA+ SL   +SENAD  M+IDDS+ PPP+KRSA+PS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAEKSLIITESENADTGMEIDDSLPPPPAKRSAIPS 60

Query: 61  SDNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAF 120
           S+N DKPTYGNP+YDGVI G+VSGR WKQ RKHR SAMQVSRKGTTFEERE+QKMIKAAF
Sbjct: 61  SENPDKPTYGNPTYDGVIGGKVSGRKWKQARKHRTSAMQVSRKGTTFEERERQKMIKAAF 120

Query: 121 RERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180
           +ERKEELKEQIR NKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL
Sbjct: 121 KERKEELKEQIRLNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKL 180

Query: 181 LKVVPDDYIKK 191
           LKVVP+DYIKK
Sbjct: 181 LKVVPEDYIKK 191

[Close]

BLAST of Sed0006238 vs. ExPASy TrEMBL
Match: A0A6J1JYC3 (Coiled-coil domain-containing protein 86 OS=Cucurbita maxima OX=3661 GN=LOC111488987 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.8e-78
Identity = 164/190 (86.32%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVPSS 60
           MACTIDFRRLDEGFGGKTYKRKREEA++SL    SENADA+MD+D+S+ PP KRSA+PSS
Sbjct: 1   MACTIDFRRLDEGFGGKTYKRKREEAESSLNIISSENADASMDVDESL-PPFKRSAIPSS 60

Query: 61  DNHDKPTYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKAAFR 120
           +N DKPT+GNP+YDGVIAG+VSGR WKQPRKHR SAM VSRKGTTFEERE+QKMIKAA+R
Sbjct: 61  ENPDKPTFGNPTYDGVIAGKVSGRKWKQPRKHRTSAMLVSRKGTTFEERERQKMIKAAYR 120

Query: 121 ERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180
           ERKEELKEQIR+NKVEKRKK+EEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL
Sbjct: 121 ERKEELKEQIRSNKVEKRKKKEEREKKKKENILRSGTKLQKITNPKTLKKIAKSKQKKLL 180

Query: 181 KVVPDDYIKK 191
           KVVP+DYIKK
Sbjct: 181 KVVPEDYIKK 189

[Close]

BLAST of Sed0006238 vs. TAIR 10
Match: AT2G31410.1 (unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 120/192 (62.50%), Postives = 149/192 (77.60%), Query Frame = 0


Query: 1   MACTIDFRRLDEGFGGKTYKRKREEAQNSLTTADSENADAAMDIDDSVPPPSKRSAVPSS 60
           MACT+DFR LDEGFGGKTYKRKRE  + +   A ++  +A+MDI D  PP +KRSAV SS
Sbjct: 1   MACTVDFRCLDEGFGGKTYKRKRESQEQAAAEAIAD--EASMDI-DGAPPAAKRSAVASS 60

Query: 61  DNHDKP---TYGNPSYDGVIAGRVSGRNWKQPRKHRASAMQVSRKGTTFEEREKQKMIKA 120
           +N DKP       P+YDGVIAG+VSGRNWKQPR HR+S   V  +    EE ++Q+ IK 
Sbjct: 61  ENPDKPIALAVERPTYDGVIAGKVSGRNWKQPRTHRSSGRFVKNRKPDLEEMKRQREIKK 120

Query: 121 AFRERKEELKEQIRTNKVEKRKKREEREKKKKENILRSGTKLQKITNPKTLKKIAKS-KQ 180
           A++ER  ELKE+IR+NKVEKRKK+EEREK+KKEN+LR+GTKLQKITNPKTLKKI+ S KQ
Sbjct: 121 AYKERVNELKEEIRSNKVEKRKKKEEREKRKKENVLRTGTKLQKITNPKTLKKISMSKKQ 180

Query: 181 KKLLKVVPDDYI 189
           +K LK +PD+ +
Sbjct: 181 RKQLKKIPDEML 189

The following BLAST results are available for this feature:

BLAST of Sed0006238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141739.1	1.3e-80	89.58	protein PXR1 [Momordica charantia] >XP_022141740.1 protein PXR1 [Momordica chara...	[more]
XP_008465532.1	3.9e-80	88.48	PREDICTED: protein PXR1 [Cucumis melo] >KAA0066071.1 protein PXR1 [Cucumis melo ...	[more]
XP_038874831.1	6.7e-80	87.89	protein PXR1 [Benincasa hispida]	[more]
XP_004143761.1	2.8e-78	86.91	protein PXR1 [Cucumis sativus] >KGN51128.1 hypothetical protein Csa_009132 [Cucu...	[more]
XP_022939634.1	1.4e-77	86.32	protein PXR1 [Cucurbita moschata] >XP_023550361.1 protein PXR1 [Cucurbita pepo s...	[more]

BLAST of Sed0006238 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIY7	6.5e-81	89.58	Coiled-coil domain-containing protein 86 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3BKZ5	1.9e-80	88.48	Coiled-coil domain-containing protein 86 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CP36	1.9e-80	88.48	Coiled-coil domain-containing protein 86 OS=Cucumis melo OX=3656 GN=LOC103503157...	[more]
A0A0A0KNG5	1.4e-78	86.91	Coiled-coil domain-containing protein 86 OS=Cucumis sativus OX=3659 GN=Csa_5G458...	[more]
A0A6J1JYC3	6.8e-78	86.32	Coiled-coil domain-containing protein 86 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Sed0006238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31410.1	1.1e-51	62.50	unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	PANTHER	PTHR13557:SF2	BNAA04G18300D PROTEIN	coord: 1..188
IPR005579	Cgr1-like	PFAM	PF03879	Cgr1	coord: 79..181 e-value: 3.5E-7 score: 30.6
IPR026570	Coiled-coil domain-containing protein 86	PANTHER	PTHR13557	UNCHARACTERIZED	coord: 1..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006238.1	Sed0006238.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus