Sed0006203 (gene) Chayote v1

Overview


Name	Sed0006203
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1
Location	LG07: 8050242 .. 8055871 (-)
RNA-Seq Expression	Sed0006203
Synteny	Sed0006203

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTTTTCCCTTTTGTTATTTTATGTTTACTCACCACAACGAGAGAGCAAGAGGGTCACGAGTCACGAGTCACGAGACGCCATAGCCAGAGCCAACAAACATCATCTTCTTCAAGGAACCAAAATTGAGCTTTTCCTTTAGCTTCTAATGGCGGCCACTCATATGGGTTCTCTTTCACTTCCCCGATTTCCATTCTCCCTTCCATCTCAATCTAATCATTACTCTTTACAACAAAAGCTTCATTTCCTTCCCATCGGCCCCCTAATCGAGCCGAAGCTCGCGATTAAGCGTTCCAAGGCCACACATCCGGTCTTGAAGTTCAGCCGCCGCGCCACCACTGCCGTCGTATCGTTTAGTCTCCCGGCCTCGTACGAATTGTTTGCCACTTTTTGCTTCAGCTATTGATTCTTTTTCAAAACCCTTGAAACTAAGAGTATTTGTCTGATTTGGCAGGAAATCCGATGGCGTTTCCCCTGAGAAACTCCCCAAGTAAGTTTGCTAACAAATTCCCTTTCATTCAATTGATGTCTTTCTGCTGTCCCGGTGCCAGGCTTAGGGACAGGCGTGGTTACCCTTGTTTCAAAAAAAAAAAATTGATGTCTTTCTGCTGCATACATTGAGGTTTTATGGTGTTAATTGGAGTTTTTGTTGCTTTCCATCATAGTATGTGATTTTTATGTTCTAATGTAACAAGTATTTTTTTAAAAATTTAAGTAGGCCTGGTGATTATTTAGGTTGAATTGTAACTTTAGCTCTTAGTGATTGGGGCAAAAAGAATGAGAATGATTATGAGGGTGATGAGAATTAGAAGGAGAATGTGGGGGGAAATGATTATCGGGGACAATGATTATCTATGTTCGGGCCAAGTGAATGATTATGGGGATGAAGAAAATAGTTATGGAGGGAATAAACTATTGAGTATGCCTTATAAGTTATAAGGAGAATAAAAAATAGTTTTTTTTTTTGGATAATAATTAATTTCACTATAATTATGAAATTACAAGATAGAGCAAGCCCAAAGATCTACAATAAAGATCTCCAACTAGTTAGAAGAGAGTTAAAGCTATAGTTATGAAAAAGTAGAGAAAGCTTGCACCAAGATACAACAGTAGATGATATATTCTCAAAATGGTTGAATAGTGAGTAATAGGTGGATAAAAAATGGTTATAAAGACAATGAATGTGGTTATGGGGAGAATAAAAAGTGGCTATGGATGGGTGGGGCAATGAGATGACGGGGGAATGATTTTCGATGGTCCAAATGTGGGTAAGAGGACCGTTCTTCCTATATCCACTCTCATTCCCCTTCTCCCAAACACCCCCTAAGTTTTAAGGACCTGTTTTGGAGGTTTGCAATTAATTTTAAGGACTGTGGTTGAAAATACTGAAAGGTTAAATTGTTGCACATTTGAAACTATGAGTAGATAGATGAGCCATAATTTAACATGGCAGATGTATGACCTATTACTAGCTGCATATTGTAGAATGACTTCTTCTTAGCTTTCTGGTTTTGGTTGTATATCTTTTTTCATCTATGTAATTTGATTTTTTAACATGCCAGCAGTCAGCACATCATAGCTGTTGAATCATTTGTTATACGACTTGTCCTTTTCAGTATTAGACTATCAACTAATGCAGAAATTTATAGTGGTGTTAATTGGGACGATTGATTGTTGTATTTGTGATGTATAAGATGGTCAGAAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCCAGGAAATTAAAATATCCAAATACAGGAACAGAAGCTTTGTTAATGGGAATTTTAATTGAGGGTTAGTAGCTGTTCCAACTCTGAGGCCATTTCTTAATTCTTATTTACATCTAAATTTGGACTTGCGAATGGACTTACACTTGGTTGGGCTGTTATGCAGAATAATTTGTATCTTGGACCTTATCTTTAAATATGCAAAATCAAGATCATCAACGTAGGAGCTAACATTTGACTATCAGTTTCAAAATGTGTCTCATTTGTCTCACACACCTTTCCAGCATCATTTCATGATATCTTCCATTGTCGTCTGATGTCTCTCATGTTCAACTACAGAATTGTTTTTGGAAGACTTATTTATGCTAAAAATTTGAGCATTGAAGCTTATGTGCATGTTAGCTTCTGCCAGCTGATGATTACGAGTAACCTATATTTGACAGTAGTCTTGAGTCACCAACCACATGCTTTTTGAATGTCCTTATGCTTAATTAGTAACAATTACATGGTGAAGTGAATTGGCTATTTTCAACATTGTTTAGAAAAAAATGGAATAGGAATGGAAGTTAACTATAGGTGCACTTTCTCGGTGGCAATATGGTCTAATGCTTCAATGCTTCTCAAATTTCATTTTTCCTTGATGTATATTTCTTTACATTCTTTTCAGGGACAAGTGTAACTTCTAAGTTTTTGAGGGCTAATGGAATTACACTTTTAAAAGTAAGAGAAGAAAGTATCAAGCTATTTGGAAAATCTGACATGTATTTCTTCAGTCCAGAGCATCCTCCATTGGCTGAATCTGCTCAGAGGGCTATTGATTGGGCTGTTGCAGAGAATTTAAAGTCAGGTGTGATCATTCATCCTAATCATTCAGCATATGCGTTCTTTTGCCCGACTCTTTGACAAGATTTCCAGATTATGCTTACAGCTTACCAGAATAGAATAGTGAATAAATGCTTTCAGGATTATGCTTACCACCTTTAAATTGCTGCTACTTCTTTCAATGAGTTTTGAAGTTGTGTATACAGGCAACAACAACTTGATTGTGAATTTTTTATTTTCTCATTTAGCAAGAAGCACCCACTAGCAAAGATTTTTGCTGACCTTTGTGGCCATTTTAGCGAAGGACTTAATACATCTTATTATCTAATTGTAGATTCTTTATGGCCATTTTAGCTAGGTCTGTTTATGTGTGACTTTCTTAATTGTAGATTTTGACTAAATGATTATGACATGACATGACATGTGGACTCTAATATGTACTTTTCTTATGGCGTTGATTGAACCTAAGGTCTTGTATTGTATGCAGGTCAATCTGGGGAAATATCTACAGGTCATTTGCTTCTTGGTATTTGGTCAGGGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCAAAAGAGCTCGAAAAAATTGTAAGTTTTAAGTTATTTTCTTCTAGCTAGTAGAACTCTCGGGATTTGATGATCTACTCCACCCAATACATCTTTGTTGTTCCCAGGTGAACAAGGATGCAACTTTGAGTCATAAGTAGATGTATCATGTAGGAAGATGTGATGTCATTTTCATATTTTCGTGGATAAAATCATGAAAAAGGAAACTCCGAATGAGATTCATATGGATTTGGATCCTCGTGCATCGATTTGGTGATATAGTGATTTGCCTGTTTAATCAACATCTGCCGTTCAACATAATCGGCTTCATTTTCAATGGACTATTGTTCGAACTTGTGGAGTGCTGGTGTGGTACGCTATATTTCAGTGGTCTCAAATTGCTTGCTGGAAATAGTTTTCTTACTGTGGCTTTTTTTTGGACAAGCAACCTGTTCAAAAGGGAATTCTAACCCTTATAATTAAATTGACACATACGATTCTTAATTTGGTCTTTGTAAAACATCCTCAATTACTTTTCAATTTTAACATTTAGAATTTTTTCTTTGTTTCTGTATGCTTCTTATTTTATGAGGTTCCATCTTCTCAAATTTTAGAATTCTTTACATTTTCATTCATCTCATCGGTTAAGTTTGTTCTCACATTTTTTGCCTAAGTAAATTATTTTTCTGAATGTATAGATAGTTTTGATTTATGTGGTTCAGATTCTAGCGGCTAAATATAGCACATGCTCTACTTTTTAGCTTTTTGGGGGGATAATGCTCTTATTGGATCTTCAGAGAGTCAAAATTATTTCATAAATATATGAAATTTACAACCATCATGGAGCGGCTCAAGTCGACAAAGAGGGTTTGGAAGTGTTTAAGGTGATGTGTTCAATCCATGGTGGCCACCAACCTAGGAACTAATTTCCTATGAGTTTCCTTAACATCCAAATTTTGTAGGGTCAAGCAGGTGCACGCAAACTGGGCCGGACAATCACGGATATAAAAAAAAAATAATAATAATGAAATTTACAAGGTTATTATTTTGAATGTTTGAATTCTTTAGCCATGTGTTTTCTAAGAGAAATAACTATTGGGCTATGGCAATATAAATTGAAAATTGCGAGTTAAAACATGAATAGTAATGGGAAGTCTTAGGAATCTGTTAACTTTTATTTGATCATCTGTGGTAGATGCCTAACCCAGTGTCCCTATGTGCTGGCCTTGTTGGTTGAGACTTGGTGTCTTCAAGGTTTATTTACTTGAAGGTCTCAGCTTCCAAATTCACAAGTGAGCTTAATTATAAATTTTTTTATTATCGTCTAGGTTTGAGCCTTGAGACGGGTGCAAGTGCCTCGAGTATGTAGTGGGCGAAGCTTCGGATCCCTGTTACTAAAAAAAGGCATAACCTATATTCAATATTTTTAATTTGAAATATCGTTTGACATATGAAACTATGAAAGTATTGTGAAGCTGGGCCTTTTAGCATTGTTCTCATAGTTCGGTGCAACATTGATTTAGCGGTTATAGATGTAATAATAATGATTAATGAGTGCATTTTAAACATAGCTCAATAAACATGTTCCCCATTAAGTGTCCCATCCCACACTGCCTATTTCTTTTTGTTCTTTTGTATTTAGCAGGTTGAAATGAACAGTCTACATAGTTTCTCATTTTCTTAAGATCTCTTTATTTTTATCCCTAATGGGGGTGATAGATTTGAATTTCATCTGAGAAATTTCTTCATGTCTATTCTTACTAGTTGGAATCTGGTATTTGCTGATAATGATATGGTTGGCATGGTGAAAGGGACCAACTTTAGTGGACCGACGTAGGAACAGATCCATCTATGAGGAACAACTCTTTATGTCATTTCAAAGTTTCTTAAAGCATTCTGATTCAGCCAGAATGCAATGTCTCTGGACACTTTGAAGCCACTAGCCAAAAACTTGAACAGTAACAAGTTTGTCTGCTTAAGACTTTGCATCTAGTCCATCTGGATAGAGTTTGGAACATGAAGCAACCTCATCTTCTTGGCTTTGCAGGATTGTTTTTGTGAAAGTTGAATGAGAATGCTGCCCCCCCTTCTCTGTGAACTTATCTGTCATTTCTTCTTTTCCCTCTCCTTTTTGCCTTAATGGGTTTTTTTGGTGGCCTTTTCTTTTAATTTTTCACCCCCTTAATAATAATAATTATTATCTTACCTGATTTTGCTAATTCTTATCATATTGCTAGGGAATAGTATTGTGCATCTTAACCATTGATTGGAGATAGGGTCAAAATGCATTTCACCTTGGATCTGATCAGTGGAGCTTAAACATGTCTTGAACTTGCACTGTTGCTCTAAGGTAACCACAATGACCCTAAGAACAATCATATAGCTATTTCCATTTCATCTGTTAATTACCTGCAGCAGTATCATATGTGTGCAAGTCTGGCTAGTTGTTTTTCATTCAGAGATGCCTTGCACTCTATTTTGTTTGTAGCAAATTTCCCCC

mRNA sequence

GTGTTTTTTCCCTTTTGTTATTTTATGTTTACTCACCACAACGAGAGAGCAAGAGGGTCACGAGTCACGAGTCACGAGACGCCATAGCCAGAGCCAACAAACATCATCTTCTTCAAGGAACCAAAATTGAGCTTTTCCTTTAGCTTCTAATGGCGGCCACTCATATGGGTTCTCTTTCACTTCCCCGATTTCCATTCTCCCTTCCATCTCAATCTAATCATTACTCTTTACAACAAAAGCTTCATTTCCTTCCCATCGGCCCCCTAATCGAGCCGAAGCTCGCGATTAAGCGTTCCAAGGCCACACATCCGGTCTTGAAGTTCAGCCGCCGCGCCACCACTGCCGTCGTATCGTTTAGTCTCCCGGCCTCGAAATCCGATGGCGTTTCCCCTGAGAAACTCCCCAAATGGTCAGAAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCCAGGAAATTAAAATATCCAAATACAGGAACAGAAGCTTTGTTAATGGGAATTTTAATTGAGGGGACAAGTGTAACTTCTAAGTTTTTGAGGGCTAATGGAATTACACTTTTAAAAGTAAGAGAAGAAAGTATCAAGCTATTTGGAAAATCTGACATGTATTTCTTCAGTCCAGAGCATCCTCCATTGGCTGAATCTGCTCAGAGGGCTATTGATTGGGCTGTTGCAGAGAATTTAAAGTCAGGTCAATCTGGGGAAATATCTACAGGTCATTTGCTTCTTGGTATTTGGTCAGGGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCAAAAGAGCTCGAAAAAATTTTGGAATCTGGTATTTGCTGATAATGATATGGTTGGCATGGTGAAAGGGACCAACTTTAGTGGACCGACGTAGGAACAGATCCATCTATGAGGAACAACTCTTTATGTCATTTCAAAGTTTCTTAAAGCATTCTGATTCAGCCAGAATGCAATGTCTCTGGACACTTTGAAGCCACTAGCCAAAAACTTGAACAGTAACAAGTTTGTCTGCTTAAGACTTTGCATCTAGTCCATCTGGATAGAGTTTGGAACATGAAGCAACCTCATCTTCTTGGCTTTGCAGGATTGTTTTTGTGAAAGTTGAATGAGAATGCTGCCCCCCCTTCTCTGTGAACTTATCTGTCATTTCTTCTTTTCCCTCTCCTTTTTGCCTTAATGGGTTTTTTTGGTGGCCTTTTCTTTTAATTTTTCACCCCCTTAATAATAATAATTATTATCTTACCTGATTTTGCTAATTCTTATCATATTGCTAGGGAATAGTATTGTGCATCTTAACCATTGATTGGAGATAGGGTCAAAATGCATTTCACCTTGGATCTGATCAGTGGAGCTTAAACATGTCTTGAACTTGCACTGTTGCTCTAAGGTAACCACAATGACCCTAAGAACAATCATATAGCTATTTCCATTTCATCTGTTAATTACCTGCAGCAGTATCATATGTGTGCAAGTCTGGCTAGTTGTTTTTCATTCAGAGATGCCTTGCACTCTATTTTGTTTGTAGCAAATTTCCCCC

Coding sequence (CDS)

ATGGCGGCCACTCATATGGGTTCTCTTTCACTTCCCCGATTTCCATTCTCCCTTCCATCTCAATCTAATCATTACTCTTTACAACAAAAGCTTCATTTCCTTCCCATCGGCCCCCTAATCGAGCCGAAGCTCGCGATTAAGCGTTCCAAGGCCACACATCCGGTCTTGAAGTTCAGCCGCCGCGCCACCACTGCCGTCGTATCGTTTAGTCTCCCGGCCTCGAAATCCGATGGCGTTTCCCCTGAGAAACTCCCCAAATGGTCAGAAAGAGCAATAAAGTCATTTGCAATGGCAGAATTGGAAGCCAGGAAATTAAAATATCCAAATACAGGAACAGAAGCTTTGTTAATGGGAATTTTAATTGAGGGGACAAGTGTAACTTCTAAGTTTTTGAGGGCTAATGGAATTACACTTTTAAAAGTAAGAGAAGAAAGTATCAAGCTATTTGGAAAATCTGACATGTATTTCTTCAGTCCAGAGCATCCTCCATTGGCTGAATCTGCTCAGAGGGCTATTGATTGGGCTGTTGCAGAGAATTTAAAGTCAGGTCAATCTGGGGAAATATCTACAGGTCATTTGCTTCTTGGTATTTGGTCAGGGGAATCAGCAGGTCGCAAGATCTTGGCCACCCTTGGCTTTGATGATGAGAAAGCAAAAGAGCTCGAAAAAATTTTGGAATCTGGTATTTGCTGA

Protein sequence

MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSRRATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKILESGIC

Homology

[Close]

BLAST of Sed0006203 vs. NCBI nr
Match: KAA0033572.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] >TYK30329.1 ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.5e-97
Identity = 189/234 (80.77%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLS  + P SLPSQSN YSL+ K    P+ PLIE KLAIKRS ATHPV KF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT A VSFSLPASK +GVSPEKLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS  +KFLRANGITL KVREE++KL GKSDMYFFSPEHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+ K V+KDAT S+K
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.5 bits (937), Expect = 3.3e-97
Identity = 188/234 (80.34%), Postives = 205/234 (87.61%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT M SLSL   PFSLP+QSN YSL+ K  FLP  PLI+  LAIKRS ATH V KF+R
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPASK +GVSP+KLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGT++ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL ESAQRA+DWAVAE L
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLL IWS ESAGRKILATLGFDDEKAKE+EK V+ DAT S+K
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0006203 vs. NCBI nr
Match: XP_023552673.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.0 bits (933), Expect = 9.7e-97
Identity = 187/234 (79.91%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT M SLSL   PFSLP+QSN YSL+ K  FLP  PLI+  LAIKRS ATH V KF+R
Sbjct: 1   MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPASK +GVSP+KLPKWS RAIKSFAM ELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMGELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGT++ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL ESAQRA+DWAVAE L
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLL IWS ESAGRKILATLGFDDEKAKE+EK V+ DAT S+K
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0006203 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 364.0 bits (933), Expect = 9.7e-97
Identity = 185/234 (79.06%), Postives = 206/234 (88.03%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLSL + PFSL +QSN Y+L+ K  FLP+ PL E KLAIKRS  TH V KF+R
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPA+K +GVSP+KLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS+ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSG+SGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+EK V+KDAT S+K
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. NCBI nr
Match: XP_008439115.1 (PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 2.2e-96
Identity = 188/234 (80.34%), Postives = 202/234 (86.32%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLS  + P SLPSQSN YSL+ K    P+ PLIE KLAIKRS ATHPV KF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT A VSFSLPASK +GVSPEKLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS  +KFLRANGITL KVREE++KL GKSDMYFFS EHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+ K V+KDAT S+K
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot
Match: Q93WL3 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT1 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-55
Identity = 108/176 (61.36%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 60  RRATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGI 119
           R  T+A    ++P ++ +  S +K+PKWS RAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAEN 179
           L+EGTS  +KFLR NG+TL KVR+E++ L GKSDMYFFSPEHPPL E AQ+AI WA+ E 
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEISTGHLLLGIWS-GESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
            KS   GE++T +LLLG+WS  +SAGR+IL  LGF+++KAKE+EK +N+D  LS K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot
Match: Q8GW78 (ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPT2 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55
Identity = 119/174 (68.39%), Postives = 134/174 (77.01%), Query Frame = 0


Query: 60  RRATTAVVSFSLPASKSD-GVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP +  D  VS  K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAE 179
           ILIEGTS TSKFLRAN I L KVREE++KL GK+DMYFFSPEHPPL E AQRA+D A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 NLKSGQSGEISTGHLLLGIWSG-ESAGRKILATLGFDDEKAKELEKIVNKDATL 232
           NLK+G  GE+   H+LLGIWS  ES G KILATLGF DEK+KELE   ++   L
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELESFASESGFL 239

[Close]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot
Match: P46523 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Fragment) OS=Brassica napus OX=3708 GN=CLPA PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-12
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 68  SFSLPASK-SDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSV 127
           + ++P  K S GV      +++E+AIK   +A+ EAR+L +   GTE +L+G++ EGT +
Sbjct: 25  AMNVPKGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGI 84

Query: 128 TSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSG 187
            +K L++ GI L   R E  K+ G+     F     P    A+R ++ ++ E  + G + 
Sbjct: 85  AAKVLKSMGINLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN- 144

Query: 188 EISTGHLLLGIW-SGESAGRKILATLGFD 215
            I + HLLLG+   GE    ++L  LG D
Sbjct: 145 YIGSEHLLLGLLREGEGVAARVLENLGAD 170

[Close]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot
Match: Q7F9I1 (Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC1 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-11
Identity = 47/140 (33.57%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 76  SDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANG 135
           S GV      +++E+AIK   +A+ EAR+L +   GTE +L+G++ EGT + +K L++ G
Sbjct: 80  SRGVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 139

Query: 136 ITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLL 195
           I L   R E  K+ G+     F     P    A+R ++ ++ E  + G +  I + HLLL
Sbjct: 140 INLKDARVEVEKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLL 199

Query: 196 GIW-SGESAGRKILATLGFD 215
           G+   GE    ++L +LG D
Sbjct: 200 GLLREGEGVAARVLESLGAD 216

[Close]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 79  VSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANGITL 138
           V+     +++E+AIK   +A+ EAR+L +   GTE +L+G++ EGT + +K L++ GI L
Sbjct: 84  VTRSMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINL 143

Query: 139 LKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLLGIW 198
              R E  K+ G+ +   F     P    A+R ++ ++ E  + G +  I + HLLLG+ 
Sbjct: 144 KDARVEVEKIIGRGN--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLL 203

Query: 199 -SGESAGRKILATLGFD 215
             GE    ++L +LG D
Sbjct: 204 REGEGVAARVLESLGAD 217

[Close]

BLAST of Sed0006203 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.2e-97
Identity = 189/234 (80.77%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLS  + P SLPSQSN YSL+ K    P+ PLIE KLAIKRS ATHPV KF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT A VSFSLPASK +GVSPEKLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS  +KFLRANGITL KVREE++KL GKSDMYFFSPEHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+ K V+KDAT S+K
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.7e-97
Identity = 185/234 (79.06%), Postives = 206/234 (88.03%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLSL + PFSL +QSN Y+L+ K  FLP+ PL E KLAIKRS  TH V KF+R
Sbjct: 1   MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPA+K +GVSP+KLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPATKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS+ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSG+SGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+EK V+KDAT S+K
Sbjct: 181 KSGESGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIEKSVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. ExPASy TrEMBL
Match: A0A1S3AY13 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103484006 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.0e-96
Identity = 188/234 (80.34%), Postives = 202/234 (86.32%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT + SLS  + P SLPSQSN YSL+ K    P+ PLIE KLAIKRS ATHPV KF+R
Sbjct: 1   MAATRLNSLSFSQLPLSLPSQSNCYSLEHKPLLFPLTPLIELKLAIKRSNATHPVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RAT A VSFSLPASK +GVSPEKLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATAATVSFSLPASKPEGVSPEKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGTS  +KFLRANGITL KVREE++KL GKSDMYFFS EHPPL E AQRA+DWAVAE L
Sbjct: 121 IEGTSTAAKFLRANGITLFKVREETVKLLGKSDMYFFSSEHPPLTEPAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLLGIWS ESAGRKILATLGFDDEKAKE+ K V+KDAT S+K
Sbjct: 181 KSGQSGEITTGHLLLGIWSEESAGRKILATLGFDDEKAKEIAKTVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. ExPASy TrEMBL
Match: A0A6J1J1K1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482587 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.8e-96
Identity = 185/234 (79.06%), Postives = 206/234 (88.03%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT M SLSL   P SLP+QSN YSL+ K  FLP+ PLI+  LAI+RS ATH + K +R
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIERSNATHSISKSTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA+VSFSLPASK +GVSP+KLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTAIVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGT++ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL ESAQRA+DWAVAE L
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLL IWS ESAGRKILATLGFDDEKAKE+EK V+KDAT S+K
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDDEKAKEIEKTVDKDATFSYK 234

[Close]

BLAST of Sed0006203 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.0e-96
Identity = 186/234 (79.49%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MAATHMGSLSLPRFPFSLPSQSNHYSLQQKLHFLPIGPLIEPKLAIKRSKATHPVLKFSR 60
           MAAT M SLSL   P SLP+QSN YSL+ K  FLP+ PLI+  LAIKRS ATH V KF+R
Sbjct: 1   MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 61  RATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGIL 120
           RATTA VSFSLPASK +GVSP+KLPKWS RAIKSFAMAELEARKLKYPNTGTEALLMGIL
Sbjct: 61  RATTATVSFSLPASKPEGVSPDKLPKWSARAIKSFAMAELEARKLKYPNTGTEALLMGIL 120

Query: 121 IEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENL 180
           IEGT++ ++FLRANGITL KVREE++KL GKSDMYFFSPEHPPL ESAQRA+DWAVAE L
Sbjct: 121 IEGTNIAARFLRANGITLFKVREETVKLLGKSDMYFFSPEHPPLTESAQRALDWAVAEKL 180

Query: 181 KSGQSGEISTGHLLLGIWSGESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
           KSGQSGEI+TGHLLL IWS ESAGRKILATLGFD EKAKE+EK V+ DAT S+K
Sbjct: 181 KSGQSGEITTGHLLLAIWSEESAGRKILATLGFDGEKAKEIEKTVDNDATFSYK 234

[Close]

BLAST of Sed0006203 vs. TAIR 10
Match: AT4G25370.1 (Double Clp-N motif protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-56
Identity = 108/176 (61.36%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 60  RRATTAVVSFSLPASKSDGVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMGI 119
           R  T+A    ++P ++ +  S +K+PKWS RAIKS AM ELEARKLKYP+TGTEA+LMGI
Sbjct: 59  RCLTSASTVLNVPIAQPENGSSDKIPKWSARAIKSLAMGELEARKLKYPSTGTEAILMGI 118

Query: 120 LIEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAEN 179
           L+EGTS  +KFLR NG+TL KVR+E++ L GKSDMYFFSPEHPPL E AQ+AI WA+ E 
Sbjct: 119 LVEGTSTVAKFLRGNGVTLFKVRDETLSLLGKSDMYFFSPEHPPLTEPAQKAIAWAIDEK 178

Query: 180 LKSGQSGEISTGHLLLGIWS-GESAGRKILATLGFDDEKAKELEKIVNKDATLSHK 235
            KS   GE++T +LLLG+WS  +SAGR+IL  LGF+++KAKE+EK +N+D  LS K
Sbjct: 179 NKSDVDGELTTAYLLLGVWSQKDSAGRQILEKLGFNEDKAKEVEKSMNEDVDLSFK 234

[Close]

BLAST of Sed0006203 vs. TAIR 10
Match: AT4G12060.1 (Double Clp-N motif protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-56
Identity = 119/174 (68.39%), Postives = 134/174 (77.01%), Query Frame = 0


Query: 60  RRATTAVVSFSLPASKSD-GVSPEKLPKWSERAIKSFAMAELEARKLKYPNTGTEALLMG 119
           RR   + +S SLP +  D  VS  K PKWS RAIKSFAM ELEARKLKYPNTGTEALLMG
Sbjct: 67  RRIHKSAIS-SLPTANPDLVVSDAKKPKWSWRAIKSFAMGELEARKLKYPNTGTEALLMG 126

Query: 120 ILIEGTSVTSKFLRANGITLLKVREESIKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAE 179
           ILIEGTS TSKFLRAN I L KVREE++KL GK+DMYFFSPEHPPL E AQRA+D A+ +
Sbjct: 127 ILIEGTSFTSKFLRANKIMLYKVREETVKLLGKADMYFFSPEHPPLTEDAQRALDSALDQ 186

Query: 180 NLKSGQSGEISTGHLLLGIWSG-ESAGRKILATLGFDDEKAKELEKIVNKDATL 232
           NLK+G  GE+   H+LLGIWS  ES G KILATLGF DEK+KELE   ++   L
Sbjct: 187 NLKAGGIGEVMPAHILLGIWSEVESPGHKILATLGFTDEKSKELESFASESGFL 239

[Close]

BLAST of Sed0006203 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-12
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANGITLLKVREES 145
           +++E+AIK   +A+ EAR+L +   GTE +L+G++ EGT + +K L++ GI L   R E 
Sbjct: 97  RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 156

Query: 146 IKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLLGIW-SGESAG 205
            K+ G+     F     P    A+R ++ ++ E  + G +  I + HLLLG+   GE   
Sbjct: 157 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 216

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 217 ARVLENLGAD 223

[Close]

BLAST of Sed0006203 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-11
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANGITLLKVREES 145
           +++E+AIK   +++ EAR+L +   GTE +L+G++ EGT + +K L++ GI L   R E 
Sbjct: 117 RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 176

Query: 146 IKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLLGIW-SGESAG 205
            K+ G+     F     P    A+R ++ ++ E  + G +  I + HLLLG+   GE   
Sbjct: 177 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 236

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 237 ARVLENLGAD 243

[Close]

BLAST of Sed0006203 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-11
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 86  KWSERAIKSFAMAELEARKLKYPNTGTEALLMGILIEGTSVTSKFLRANGITLLKVREES 145
           +++E+AIK   +++ EAR+L +   GTE +L+G++ EGT + +K L++ GI L   R E 
Sbjct: 86  RFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDSRVEV 145

Query: 146 IKLFGKSDMYFFSPEHPPLAESAQRAIDWAVAENLKSGQSGEISTGHLLLGIW-SGESAG 205
            K+ G+     F     P    A+R ++ ++ E  + G +  I + HLLLG+   GE   
Sbjct: 146 EKIIGRGS--GFVAVEIPFTPRAKRVLELSLEEARQLGHN-YIGSEHLLLGLLREGEGVA 205

Query: 206 RKILATLGFD 215
            ++L  LG D
Sbjct: 206 ARVLENLGAD 212

The following BLAST results are available for this feature:

BLAST of Sed0006203 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033572.1	2.5e-97	80.77	ATP-dependent Clp protease ATP-binding subunit CLPT1 [Cucumis melo var. makuwa] ...	[more]
KAG6576777.1	3.3e-97	80.34	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
XP_023552673.1	9.7e-97	79.91	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022141304.1	9.7e-97	79.06	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]
XP_008439115.1	2.2e-96	80.34	PREDICTED: ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-l...	[more]

BLAST of Sed0006203 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93WL3	1.9e-55	61.36	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic OS=Arabidops...	[more]
Q8GW78	2.5e-55	68.39	ATP-dependent Clp protease ATP-binding subunit CLPT2, chloroplastic OS=Arabidops...	[more]
P46523	7.6e-12	32.89	ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic (Frag...	[more]
Q7F9I1	1.0e-11	33.57	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q2QVG9	2.2e-11	32.85	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of Sed0006203 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3F8	1.2e-97	80.77	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]
A0A6J1CI79	4.7e-97	79.06	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A1S3AY13	1.0e-96	80.34	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1J1K1	1.8e-96	79.06	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1E4F8	3.0e-96	79.49	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]

BLAST of Sed0006203 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25370.1	1.4e-56	61.36	Double Clp-N motif protein	[more]
AT4G12060.1	1.8e-56	68.39	Double Clp-N motif protein	[more]
AT5G50920.1	2.7e-12	33.85	CLPC homologue 1	[more]
AT3G48870.1	1.0e-11	33.08	Clp ATPase	[more]
AT3G48870.2	1.0e-11	33.08	Clp ATPase	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004176	Clp, repeat (R) domain	PFAM	PF02861	Clp_N	coord: 98..144 e-value: 2.6E-6 score: 27.5 coord: 185..225 e-value: 4.8E-7 score: 29.8
IPR004176	Clp, repeat (R) domain	PROSITE	PS51903	CLP_R	coord: 84..228 score: 26.405975
IPR036628	Clp, N-terminal domain superfamily	GENE3D	1.10.1780.10		coord: 86..228 e-value: 1.2E-40 score: 140.9
IPR036628	Clp, N-terminal domain superfamily	SUPERFAMILY	81923	Double Clp-N motif	coord: 86..218
None	No IPR available	PANTHER	PTHR47016:SF1	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 14..226
IPR044217	ATP-dependent Clp protease ATP-binding subunit CLPT1/2	PANTHER	PTHR47016	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC	coord: 14..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006203.3	Sed0006203.3	mRNA
Sed0006203.1	Sed0006203.1	mRNA
Sed0006203.2	Sed0006203.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009532	plastid stroma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008233	peptidase activity