Sed0006200 (gene) Chayote v1

Overview


Name	Sed0006200
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 35461664 .. 35462339 (-)
RNA-Seq Expression	Sed0006200
Synteny	Sed0006200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATTGTGGAAGGGAAGCAATTAAGATGGAGGCAGTTTAGTGAACAGAAAATGAGGAGGAGCTTAATTTCAAAAAACCCAATTGCCTTTGCTTTTATGGGTTTACAGATCACAACACTAAGTCTTCCAGAGCTAAGTGTAGGAATAAAGAGTAATCATCAAACTTCAGTTATGAGTAAGGTTTCAAAAGATGATAGAAATGTTGCCCAAGGATCTTACCAGTAAATGAAAGCTTGACAACTGATAAGTTGGATGACACATGTGCAGTCGTTTCACATGTACTAGGTTTCTCTCTGCTGTTCCTCGAACTATTTTGTTCGTTATTTGATGATTATTCTCAAATTATTTGTTTCCATATTTATTGGATTAGTATCTTATATTTATAATATTATTGATTTGTAGAGGATATTATCCTAATGTATTATTTGTTTCCTTATTTGTAAAGTAAGGGTTTCTCTATTTAAGAAACACCTAATCCTATTATGAAAAACACCTATTCCTCTCTTTATATTTTGTACATATTTATTCGACTTCGGTAGATTATAAGAATGAGATTTCATATGATTCTGTGTCTGGATTTACACTGTATATTTCCAAGGACATAAAGGAGGATGGTGTTATAATGGATACTGAGTTTGAGCAATCAGTAAAACCAGATGACAGTGAAGATTGA

mRNA sequence

ATGCATATTGTGGAAGGGAAGCAATTAAGATGGAGGCAGTTTAGTGAACAGAAAATGAGGAGGAGCTTAATTTCAAAAAACCCAATTGCCTTTGCTTTTATGGGTTTACAGATCACAACACTAAGTCTTCCAGAGCTAAGTGTAGGAATAAAGAGTAATCATCAAACTTCAGTTATGAATTATAAGAATGAGATTTCATATGATTCTGTGTCTGGATTTACACTGTATATTTCCAAGGACATAAAGGAGGATGGTGTTATAATGGATACTGAGTTTGAGCAATCAGTAAAACCAGATGACAGTGAAGATTGA

Coding sequence (CDS)

ATGCATATTGTGGAAGGGAAGCAATTAAGATGGAGGCAGTTTAGTGAACAGAAAATGAGGAGGAGCTTAATTTCAAAAAACCCAATTGCCTTTGCTTTTATGGGTTTACAGATCACAACACTAAGTCTTCCAGAGCTAAGTGTAGGAATAAAGAGTAATCATCAAACTTCAGTTATGAATTATAAGAATGAGATTTCATATGATTCTGTGTCTGGATTTACACTGTATATTTCCAAGGACATAAAGGAGGATGGTGTTATAATGGATACTGAGTTTGAGCAATCAGTAAAACCAGATGACAGTGAAGATTGA

Protein sequence

MHIVEGKQLRWRQFSEQKMRRSLISKNPIAFAFMGLQITTLSLPELSVGIKSNHQTSVMNYKNEISYDSVSGFTLYISKDIKEDGVIMDTEFEQSVKPDDSED

Homology

[Close]

BLAST of Sed0006200 vs. NCBI nr
Match: KAG7016003.1 (hypothetical protein SDJN02_21107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 67/202 (33.17%), Postives = 78/202 (38.61%), Query Frame = 0


Query: 13  QFSEQKMRRSLISKNPIAFAFMGLQ--------ITTLSLPELSVGIK--SNHQTSV---- 72
           QF+EQ+M+RS I KNPIAF FM L         ITTL LPEL+VG K  +++Q SV    
Sbjct: 26  QFTEQRMKRSFILKNPIAFVFMILSLCCLLIVLITTLRLPELTVGDKAVASNQISVIRKV 85

Query: 73  ------------------------------------------------------------ 103
                                                                       
Sbjct: 86  PKDHKLGKFGEMMIKMLPKDLAFTVFIPSEKAFKRELSLRVNESLTTEKLDDTYAVISRI 145

[Close]

BLAST of Sed0006200 vs. NCBI nr
Match: XP_022133527.1 (uncharacterized protein LOC111006089 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 56  TSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGVIMDTE 104
           +S+++Y  EISYD+VSGFTLYISK                DIK+        DGVIMD E
Sbjct: 119 SSLVDYGKEISYDAVSGFTLYISKDRDGMLIVNRVRSEMVDIKKKDIVVHIMDGVIMDAE 178

[Close]

BLAST of Sed0006200 vs. NCBI nr
Match: XP_022939922.1 (uncharacterized protein LOC111445644 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 40/74 (54.05%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 54  HQTSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGVIMD 104
           + TSV +Y NEISYD+VSGFTL ISK                DIK+        DGVIMD
Sbjct: 125 YSTSV-DYGNEISYDAVSGFTLNISKDRDGMLIVNRVRSETVDIKKKDVLVHIMDGVIMD 184

[Close]

BLAST of Sed0006200 vs. NCBI nr
Match: XP_023549508.1 (uncharacterized protein LOC111807988 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 51  KSNHQTSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGV 104
           ++ + TSV +Y NEISYD+VSGFTL ISK                D+K+        DGV
Sbjct: 122 RTMYSTSV-DYGNEISYDAVSGFTLNISKDKDGMLIVNRVRSEMVDVKKKDVLVHIMDGV 181

[Close]

BLAST of Sed0006200 vs. NCBI nr
Match: KAG6578441.1 (hypothetical protein SDJN03_22889, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-04
Identity = 40/74 (54.05%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 54  HQTSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGVIMD 104
           + TSV +Y NEISYD+VSGFTL ISK                DIK+        DGVIMD
Sbjct: 110 YSTSV-DYGNEISYDAVSGFTLNISKDRDGMLIVNRVRSETVDIKKKDVLVHIMDGVIMD 169

[Close]

BLAST of Sed0006200 vs. ExPASy TrEMBL
Match: A0A6J1BWY4 (uncharacterized protein LOC111006089 OS=Momordica charantia OX=3673 GN=LOC111006089 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 56  TSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGVIMDTE 104
           +S+++Y  EISYD+VSGFTLYISK                DIK+        DGVIMD E
Sbjct: 119 SSLVDYGKEISYDAVSGFTLYISKDRDGMLIVNRVRSEMVDIKKKDIVVHIMDGVIMDAE 178

[Close]

BLAST of Sed0006200 vs. ExPASy TrEMBL
Match: A0A6J1FI64 (uncharacterized protein LOC111445644 OS=Cucurbita moschata OX=3662 GN=LOC111445644 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 40/74 (54.05%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 54  HQTSVMNYKNEISYDSVSGFTLYISK----------------DIKE--------DGVIMD 104
           + TSV +Y NEISYD+VSGFTL ISK                DIK+        DGVIMD
Sbjct: 125 YSTSV-DYGNEISYDAVSGFTLNISKDRDGMLIVNRVRSETVDIKKKDVLVHIMDGVIMD 184

The following BLAST results are available for this feature:

BLAST of Sed0006200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016003.1	1.2e-06	33.17	hypothetical protein SDJN02_21107 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022133527.1	7.7e-06	54.17	uncharacterized protein LOC111006089 [Momordica charantia]	[more]
XP_022939922.1	2.5e-04	54.05	uncharacterized protein LOC111445644 [Cucurbita moschata]	[more]
XP_023549508.1	2.5e-04	50.65	uncharacterized protein LOC111807988 [Cucurbita pepo subsp. pepo]	[more]
KAG6578441.1	2.5e-04	54.05	hypothetical protein SDJN03_22889, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0006200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWY4	3.7e-06	54.17	uncharacterized protein LOC111006089 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1FI64	1.2e-04	54.05	uncharacterized protein LOC111445644 OS=Cucurbita moschata OX=3662 GN=LOC1114456...	[more]

BLAST of Sed0006200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006200.1	Sed0006200.1	mRNA