Sed0006191 (gene) Chayote v1

Overview


Name	Sed0006191
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cold regulated protein 27, putative isoform 2
Location	LG05: 37622536 .. 37627145 (-)
RNA-Seq Expression	Sed0006191
Synteny	Sed0006191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGGGTTTCGGACCTAAATTTCTGCTTTCATTGTTCATTTCTATATTTTCCTTTCTTTTTTTCTCAACATCGATTTCGATCCAATGGGACACCATCTCCACGCGCCGTCGTCTCTCTCTCCGCCGCCGCCGCCGACGGCTGTAGATCGGCCACCGCCCTCCGCTACCGACTTCAGCTCTTCTTCCATCACCGTTGACGCTTTCGCCCGTTTCCCTAATTCTCTTCGTCGCCTGCAACTCGATGCGGTAAATTTCTGACTCTTCTTCCGACTGCGATTTGGGGTTTCTTCATTCTACTACTAGCTCCTCGTGTTGCCTGACCTAGTTTTTCTTTTACTCTAAATTAATGCGTTTTTTTTTCTGAATGATTTTGTTTAATTAAAATGATTTTGCATGATTAAGAAACAAAGTCGTTTCCTCTTAAATTGAAATTAAAATTTCACTTGTTTAGCGTTTTTTGAATTTCTAAGCCCTTGTGAGGAAGTGTTGGTTGATATAATTAATTTTGTTTTACCTCAGCCATGAACTTAATTTTGGGATGATTCATGATTTTTCAAAGCGTTTTTTCTTAGTTGGTAAATTGATCTTGATGTATGTACTTTTTATTTGGGTTTATTTTAAACTTACAGGACAAGGGATGTATGTACTTGTATTTAATTGCAGTTTCCAGTGCCTTGTGTTTCCAATTTTTCTCTTTTTCCTCTGTGCTTCAGAATTTATTTTGCAATCCTTGGTTTCATCGTTACTCCCAATTTCTTTATCTTTGTATCAGTGTTTACACCTCAAAAGAATCTTGGAATAGTTTGAAACCATCACGTGAAAACAATGAGGAATGGTTTCATTAAGGATGTGTTTGGGCCATTAAGAATAAGGAGGAGAATGAGAATGGGGATTATTCACCATGTTTGGGTCACCGTGAATCATTTCACACAATCACATTTTCCAAAAATCACTTTTTTCTTTTTTCCATTCTCCTCCCAACTGCCTTTATTGTCTCTCCAACAAATTTTTATATATCACATCATTATTTTTCACTCTCATAATTTTCATTATTTTATTTTTCTCATAATCATTCTCTATACTCTAAACATAGATAATCATTCTCTTTCCTATTTTTCCCCTCATTCTCATTCCCCCTATAATCATTACCATTCCCCTTCCTCAAACACATCCTAATTGTTGATCAAAGTCATGTCTTCATTATATTTTGTGACAAAATGTTGATCAAACTTTCTCAATTGACAACTTACTTGTGTACAGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATGTTGATTCCTTAGAAGCAACTTTTGTCCAACAGTTGCATCAAAATATACGCTTCCATGCCTTGTCTTCCAAACAGAAAATTCGTCAGAAGCCAAACATCCCTAAAATGTCATCTTCAGAGGTGAGGAAATTCATTCACAGTAAGAGTGGGAGTGCATTCCCTATCTCATTCCTCGACCTCCTTAATGATTTCCTCTTGTTTTTTTTTTTTTTGTTTAGTTAATGGTTGTTGAAGATGCCTTGCCGCCGAAGGCTAACATTGGGAGGAATGATCCTTTGTTGGATAGCACTGCCGATTCGCCTGCTATTTTGGAGGATCTACGAATAAATCGTTTTCCTTCTGCAGGAAAACAGTGCACTATGGAAACTCCTGATCTCCTTGGTGAATGTGGAAGTTGTAGTGATAGGAGACGCTTAAGAAACACAACAACGCCCTGTGGATCAGCCAGAAGTTCACAGCAGATCCCTCCACGCTCACGTAATTCTATTACAATCATTACAGGTAATTTTGTTTGATGTTAGATGGTCTTGAAAACACATGGATCATGTTTTCAAATTCTGTACTGGAGTAAGTTTTCCAGTCTAACTGTTCCTTGATTATACCTTCTAATTTATTCTTCAAAATCTTTAACCTATATCCTTATTATGCATAAACATTATTGGTGTGATCTTCAAATTATATTTTGTAATGGTGAGGGTATTTGCAATAATTTCTTTCGTACTCAGCATTCACCTTTATCACCCTAAAGGTTGATACGAAACAAATATGTATGCTAATAATAAACATAGCAGAGATAAACTAAGTGTTTAAGGTTCTTGGACCCTCCTTATGTTGAGATCACTCTTAACCCTTTCAATCATTCACTCAATGTCTTGATATCCTTTGGGCATTCCTGTCATAGGTGCTCTCATTTTTATGATTTATTTTCTTGATTGGTGTACGTACCAATATGAGGATTTCTTTGTGATGTTTCCCCCTAGTTTGCCACTTTGCTTGCACCACTTTAAGTCCTGCAAATTTTCTTTCCAATCTGATAACGTGTTTTTTTCCTTTCAAATTTATGTTCAGGCTTAGAGCATATGAGCTGTAAAATTGGTATGTCAAGCTTAGGATATTGTGTTATCTTCTTAGCTCTCTTAATACTAGTGCACCATTGGCCCGTCCCTAGGTTCCAAGGAGGAGTGGAAACACAATTTGGGGGTGTTTACAAATTAATTTTATTAGCGGGCCTCGAACCTGAAACCTTAAGGGGAGCATACCCTCAACCTTAAAGCCCAAGCCTTTGACCAAGACCAACTGTGCCACCCCTTGGAGATGTCTATATTCTAATATGTATTGATCAGATAGTTTTAGCATGGTTTTCAGTGTTGTCATAACTTTGATAGCATGGCTTTTAGTGTTTTTGCCAGGGACCTAAGATTTTAGGTCACAATTCTTCGTGCTATTTCACAATTAAGAATAATGGATTAACTAATATCTTATCTATTTGAAGTTGTTTGATGTATATTTATGAGTGAAAAAGCAGTAGTCCTTTATTTAAAGTTAGATGAGCATTATTGTACTATGTAATATGTATTAGTGGAAAAAACGAATTGAACTGTATAGACATGATTAGGACTGCATTCTGGATATTGATGAACTGCTAGATGAAGCTAGGCTGATCCAATTTTAGGATGGTAGTCAATAGCGGCTTAGGAACGAATGAAGGCAGAAATTCTTGGGATCATAACATTTTTGTTGAATTAGAGGAGCCAGGAGGCATAGAGAAATAACTTTCTGAAAATGATTCTGCAGACAGAGCTACTTCAATATTGGAGTTGAAGGGACCCTATAATGGGTCTCAATTTATGAAGTTCTCGTTAATGCCTTTTTTTTCCCTCCCTTTTCCTCACTTTGAATACATATAAACGTCCATGTAGAGTAGAAGACCTGGTGAAGAATATCTTTTCTGTTATATCGATCAAATAGATGGCAATCATTTGAAACCTTGAGCATAAGGAGATTTAAAGCTTATCTTTTACAAAGCTGATTGACTCCTTATGGTCAAATAAATGTTTCTTAAGTGCAGATCCTGTTTGTTTAATTCAAGGATCAATAACTAGGCTAGGGTGAAGTCTCTTTTCTCATCTAAGGGGGAATGCTGCCCTGCTCTCTATTAACAAAGTTTCCCCAGCTAGCTTGGAATTTAAAGAATATCAATTGAATGAGACTCATAATTTCAACCCTGTTATAAACTGTTACTTTTTTGGGGTGGGTAGGATGAGATTTTAGATAACTGGTCTATATTTTTCTAGTTCTTTGGTTATTTTAGATAAGAGTGTTCTCACAACTGTTGCCATGCTTACTTATCTTTTCACTTTTTCTTATATGCAGAAGTTTCCGATCAGAACTTTGTGGATAATCATCCACGAGAGGGGTCTGGTTGCATGCCTATGGCGAAAAGATTTAAGAAAGCTACTTCTGATTCTTCGGTTAACGATCAGGTAAAGCTCGGGATTGCTTTTGATTTCTCTTTGGAAAACTTATAATTGCATTGTATTAGTGATCTGAGACCGACTTGCTTGATCTACTAGGTTGTACCGTATAAAAGATTATCATCAGAAAGATAAAAGCCAGACGCCATATCCATATTGTCTGCAGAATACCCTCAAAACTTTATGCTTCCAAATTCAGATTTGTGTTACTATGCAAGAGGATGGAGAATAAAATTGGCTGTTCAAGCTCATTAACCAAATGCAACACGGTTTTGTTTTTCATTCAAAAGAGCATTGTAAAGAAACTCAATAACGGGAGGTGGCGGCAATAATTCCTGACCAGAAGATCTACAGCCGGAAGAGAAAATATGTTTGTATATGGTACAAAACTAAACTTTTTCCTAGTTCAAATATTGAGTGAAATTAAGTTAACCCTTTCTTTTCTACTGTTTTCCTTTTACTTGAGAGGTTGAAAAAAATGGAAATTTTAAATAGATTTAGGGTATGAATATACAAGTTATAAAGAAGCCACACACACCCTGATGGTGAGATAGGTACACTTTTTTTAGTTTGTTTGCAATACTCTCATTTTGAAGGTCTGTTAGAAATCTCAAGTGTAAATTATTGCATAAAACAAAGTGCCATGCTTGTGGGTGGCACTGAAAATAGTTTGAACAAACTTATTGATTTCCTTAGGGGGAAAGTCATCATATTGTATCCTGGTATCTTACTTCCATTATTTGATTTGATTTTCTTTAGGGGTAAAGTTTTATTATACTGTGTGCTGGTATTTTACCCCATTACTTGATATATTCGACTTAGCTTCAGTGTTTTTC

mRNA sequence

GAGAGGGTTTCGGACCTAAATTTCTGCTTTCATTGTTCATTTCTATATTTTCCTTTCTTTTTTTCTCAACATCGATTTCGATCCAATGGGACACCATCTCCACGCGCCGTCGTCTCTCTCTCCGCCGCCGCCGCCGACGGCTGTAGATCGGCCACCGCCCTCCGCTACCGACTTCAGCTCTTCTTCCATCACCGTTGACGCTTTCGCCCGTTTCCCTAATTCTCTTCGTCGCCTGCAACTCGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATGTTGATTCCTTAGAAGCAACTTTTGTCCAACAGTTGCATCAAAATATACGCTTCCATGCCTTGTCTTCCAAACAGAAAATTCGTCAGAAGCCAAACATCCCTAAAATGTCATCTTCAGAGTTAATGGTTGTTGAAGATGCCTTGCCGCCGAAGGCTAACATTGGGAGGAATGATCCTTTGTTGGATAGCACTGCCGATTCGCCTGCTATTTTGGAGGATCTACGAATAAATCGTTTTCCTTCTGCAGGAAAACAGTGCACTATGGAAACTCCTGATCTCCTTGGTGAATGTGGAAGTTGTAGTGATAGGAGACGCTTAAGAAACACAACAACGCCCTGTGGATCAGCCAGAAGTTCACAGCAGATCCCTCCACGCTCACGTAATTCTATTACAATCATTACAGAAGTTTCCGATCAGAACTTTGTGGATAATCATCCACGAGAGGGGTCTGGTTGCATGCCTATGGCGAAAAGATTTAAGAAAGCTACTTCTGATTCTTCGGTTAACGATCAGGTTGTACCGTATAAAAGATTATCATCAGAAAGATAAAAGCCAGACGCCATATCCATATTGTCTGCAGAATACCCTCAAAACTTTATGCTTCCAAATTCAGATTTGTGTTACTATGCAAGAGGATGGAGAATAAAATTGGCTGTTCAAGCTCATTAACCAAATGCAACACGGTTTTGTTTTTCATTCAAAAGAGCATTGTAAAGAAACTCAATAACGGGAGGTGGCGGCAATAATTCCTGACCAGAAGATCTACAGCCGGAAGAGAAAATATGTTTGTATATGGTACAAAACTAAACTTTTTCCTAGTTCAAATATTGAGTGAAATTAAGTTAACCCTTTCTTTTCTACTGTTTTCCTTTTACTTGAGAGGTTGAAAAAAATGGAAATTTTAAATAGATTTAGGGTATGAATATACAAGTTATAAAGAAGCCACACACACCCTGATGGTGAGATAGGTACACTTTTTTTAGTTTGTTTGCAATACTCTCATTTTGAAGGTCTGTTAGAAATCTCAAGTGTAAATTATTGCATAAAACAAAGTGCCATGCTTGTGGGTGGCACTGAAAATAGTTTGAACAAACTTATTGATTTCCTTAGGGGGAAAGTCATCATATTGTATCCTGGTATCTTACTTCCATTATTTGATTTGATTTTCTTTAGGGGTAAAGTTTTATTATACTGTGTGCTGGTATTTTACCCCATTACTTGATATATTCGACTTAGCTTCAGTGTTTTTC

Coding sequence (CDS)

ATGGGACACCATCTCCACGCGCCGTCGTCTCTCTCTCCGCCGCCGCCGCCGACGGCTGTAGATCGGCCACCGCCCTCCGCTACCGACTTCAGCTCTTCTTCCATCACCGTTGACGCTTTCGCCCGTTTCCCTAATTCTCTTCGTCGCCTGCAACTCGATGCGGTGCAAACACATTGGACAGATGAGAAACACAGATCATATGTTGATTCCTTAGAAGCAACTTTTGTCCAACAGTTGCATCAAAATATACGCTTCCATGCCTTGTCTTCCAAACAGAAAATTCGTCAGAAGCCAAACATCCCTAAAATGTCATCTTCAGAGTTAATGGTTGTTGAAGATGCCTTGCCGCCGAAGGCTAACATTGGGAGGAATGATCCTTTGTTGGATAGCACTGCCGATTCGCCTGCTATTTTGGAGGATCTACGAATAAATCGTTTTCCTTCTGCAGGAAAACAGTGCACTATGGAAACTCCTGATCTCCTTGGTGAATGTGGAAGTTGTAGTGATAGGAGACGCTTAAGAAACACAACAACGCCCTGTGGATCAGCCAGAAGTTCACAGCAGATCCCTCCACGCTCACGTAATTCTATTACAATCATTACAGAAGTTTCCGATCAGAACTTTGTGGATAATCATCCACGAGAGGGGTCTGGTTGCATGCCTATGGCGAAAAGATTTAAGAAAGCTACTTCTGATTCTTCGGTTAACGATCAGGTTGTACCGTATAAAAGATTATCATCAGAAAGATAA

Protein sequence

MGHHLHAPSSLSPPPPPTAVDRPPPSATDFSSSSITVDAFARFPNSLRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVNDQVVPYKRLSSER

Homology

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BLAST of Sed0006191 vs. NCBI nr
Match: XP_023529516.1 (uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-79
Identity = 178/263 (67.68%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 1   MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNS 60
           MG HL    H PSS+SPP     VDR PPS +  S          SSS+TVD F  FP S
Sbjct: 1   MGDHLLHLPHTPSSMSPP----VVDRQPPSPSSASDLTCLNSQSYSSSLTVDRFKDFP-S 60

Query: 61  LRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSS 120
            R LQLDAVQTHWTDEKHRSY+ SLEA+FVQ+LHQ  R  ALSSKQK+R +P++P +SSS
Sbjct: 61  HRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSS 120

Query: 121 ELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGS 180
           ELMV++DA   KANIGRNDPLL+  AD PAIL+D+ INRFPSAGKQCT ETPDLL E GS
Sbjct: 121 ELMVLQDASWQKANIGRNDPLLERIADYPAILDDVWINRFPSAGKQCTPETPDLLEESGS 180

Query: 181 CSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRF 240
            SDRR LRNT     SARSSQQ+PP  R S TIITEVSDQNFVDNHP E SG MP AKR 
Sbjct: 181 FSDRRHLRNTKNSYRSARSSQQVPPCCRESYTIITEVSDQNFVDNHPGEVSGGMPNAKRL 240

Query: 241 KKATSDSSVNDQVVPYKRLSSER 250
           KKA+SDSS NDQVVPYKR S ER
Sbjct: 241 KKASSDSSANDQVVPYKRPSLER 258

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BLAST of Sed0006191 vs. NCBI nr
Match: XP_038887003.1 (cold-regulated protein 27 isoform X1 [Benincasa hispida])

HSP 1 Score: 305.1 bits (780), Expect = 5.7e-79
Identity = 170/251 (67.73%), Postives = 191/251 (76.10%), Query Frame = 0


Query: 4   HLHAPSSLSPPP-PPTAVDRPPPSATDFS-------SSSITVDAFARFPNSLRRLQLDAV 63
           H H  SS+SPPP P       PPSA+D +       SSSIT+D    F  S   LQLDA 
Sbjct: 3   HSHTQSSISPPPLPDRRQSLMPPSASDSTRSISQSVSSSITLDGSNPFLYSHHSLQLDAE 62

Query: 64  QTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDAL 123
           QTHWTDEKHR Y+DSLEA+FVQ LHQ+ R HALS +QK+  KP +P +SSSELM+++DA 
Sbjct: 63  QTHWTDEKHRLYLDSLEASFVQGLHQHRRRHALSMEQKMHWKPFMPNISSSELMILQDAS 122

Query: 124 PPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRN 183
             KANIGRNDP LD TADSPAILEDL INRFPSAGKQCT E PD+L ECGSCSDRR LRN
Sbjct: 123 WQKANIGRNDPSLDKTADSPAILEDLWINRFPSAGKQCTPEIPDVLEECGSCSDRRHLRN 182

Query: 184 TTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSV 243
           T+  CGSARSSQQIPP  R+S  IITEVSDQNFVD+HPRE SG +P+AKR KK +SDSS 
Sbjct: 183 TSNSCGSARSSQQIPPCCRDSNIIITEVSDQNFVDDHPRELSGGIPIAKRLKKVSSDSSG 242

Query: 244 NDQVVPYKRLS 247
           NDQVVPYKR S
Sbjct: 243 NDQVVPYKRSS 253

[Close]

BLAST of Sed0006191 vs. NCBI nr
Match: KAG7022450.1 (hypothetical protein SDJN02_16181, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 4.8e-78
Identity = 177/263 (67.30%), Postives = 193/263 (73.38%), Query Frame = 0


Query: 1   MGHHL----HAPSSLSPPPPPTAVDRPPPSATDFS----------SSSITVDAFARFPNS 60
           MG HL    H PSS+SPP     VDR PPS +  S          SSS TVD F  FP S
Sbjct: 1   MGDHLLHLPHTPSSMSPP----VVDRQPPSPSSASDLTCLNSQSYSSSFTVDRFKDFP-S 60

Query: 61  LRRLQLDAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSS 120
            R LQLDAVQTHWTDEKHRSY+ SLEA+FVQ+LHQ  R  ALSSKQK+R +P++P +SSS
Sbjct: 61  HRCLQLDAVQTHWTDEKHRSYLGSLEASFVQELHQYRRLQALSSKQKMRCRPSMPHISSS 120

Query: 121 ELMVVEDALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGS 180
           ELMV++DA   KANIGRNDPLL+  ADSPAIL+D+ INRFPSAGK CT ETPDLL E GS
Sbjct: 121 ELMVLQDASWQKANIGRNDPLLERIADSPAILDDVWINRFPSAGKPCTSETPDLLEESGS 180

Query: 181 CSDRRRLRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRF 240
            SD R LRNT     SARSSQQIPP  R S TIITEVSDQNFVDN P E SG MP AKR 
Sbjct: 181 FSDGRHLRNTKNSYQSARSSQQIPPCCRESYTIITEVSDQNFVDNRPGEVSGGMPTAKRL 240

Query: 241 KKATSDSSVNDQVVPYKRLSSER 250
           KKA+SDSS NDQVVPYKR S ER
Sbjct: 241 KKASSDSSANDQVVPYKRPSLER 258

[Close]

BLAST of Sed0006191 vs. NCBI nr
Match: XP_008454952.1 (PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-74
Identity = 166/249 (66.67%), Postives = 184/249 (73.90%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQT 65
           H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 66  HWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPP 125
           HWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+KP +   SSSELMV++DA   
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 126 KANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTT 185
           KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 186 TPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVND 245
             CGSAR+SQQ  P   NS TIITEVSDQNFVDN P E SG MP AKR KKA+S    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

Query: 246 QVVPYKRLS 247
           QVVP+KRLS
Sbjct: 245 QVVPFKRLS 253

[Close]

BLAST of Sed0006191 vs. NCBI nr
Match: KAA0031301.1 (Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa] >TYK06753.1 Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.7e-70
Identity = 159/241 (65.98%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQT 65
           H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 66  HWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPP 125
           HWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+KP +   SSSELMV++DA   
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 126 KANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTT 185
           KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 186 TPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVND 239
             CGSAR+SQQ  P   NS TIITEVSDQNFVDN P E SG MP AKR KKA+S    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

[Close]

BLAST of Sed0006191 vs. ExPASy Swiss-Prot
Match: Q8L8T7 (Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.0e-07
Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 55  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVV 114
           ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQLYNSL--GALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 115 EDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSD 174
            D    K N+ + +  ++     +S   L    I  +    K     T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 175 RRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRF 234
            ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ 
Sbjct: 164 GKK---GICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG---SSKKM 223

Query: 235 KKA-TSDSSVNDQVVPYKRL 246
           K    S+SS  DQVVP  +L
Sbjct: 224 KTVMMSESSSTDQVVPLNKL 235

[Close]

BLAST of Sed0006191 vs. ExPASy TrEMBL
Match: A0A1S3BZU8 (uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495241 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 7.0e-75
Identity = 166/249 (66.67%), Postives = 184/249 (73.90%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQT 65
           H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 66  HWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPP 125
           HWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+KP +   SSSELMV++DA   
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 126 KANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTT 185
           KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 186 TPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVND 245
             CGSAR+SQQ  P   NS TIITEVSDQNFVDN P E SG MP AKR KKA+S    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

Query: 246 QVVPYKRLS 247
           QVVP+KRLS
Sbjct: 245 QVVPFKRLS 253

[Close]

BLAST of Sed0006191 vs. ExPASy TrEMBL
Match: A0A5D3C4A3 (Cold regulated protein 27, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00540 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 8.0e-71
Identity = 159/241 (65.98%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQT 65
           H PS +S P        PP S+T  S        SSSITVD   RF +S   LQLDA QT
Sbjct: 5   HTPSFVSSPLADRQSPMPPASSTTDSTGFNSESHSSSITVDGSKRFLDSHHCLQLDAEQT 64

Query: 66  HWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPP 125
           HWTDEKHRSY+DSLEA+FVQ LHQ+ R HALSSKQK+R+KP +   SSSELMV++DA   
Sbjct: 65  HWTDEKHRSYLDSLEASFVQGLHQHRRMHALSSKQKMRRKPIMLDTSSSELMVLQDASWQ 124

Query: 126 KANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTT 185
           KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL ECGSCSDRR +R+ T
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECGSCSDRRHIRHMT 184

Query: 186 TPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVND 239
             CGSAR+SQQ  P   NS TIITEVSDQNFVDN P E SG MP AKR KKA+S    N 
Sbjct: 185 NSCGSARNSQQTRPCCFNSYTIITEVSDQNFVDNQPGELSGGMPTAKRLKKASSGFLDNA 244

[Close]

BLAST of Sed0006191 vs. ExPASy TrEMBL
Match: A0A0A0K7Z2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.0e-70
Identity = 160/249 (64.26%), Postives = 178/249 (71.49%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPPSATDFS--------SSSITVDAFARFPNSLRRLQLDAVQT 65
           H PS LSPP        P  SAT  S        SSSIT+D    F +S    QLDA QT
Sbjct: 5   HTPSFLSPPLADRQSPMPLASATTDSTGFNSESHSSSITLDGSKHFFDSHHCSQLDAEQT 64

Query: 66  HWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALPP 125
           HWTDEKHR Y+DSLEA+FVQ LHQ+   HALS KQK+R+KP  P +SSSELMV++DA   
Sbjct: 65  HWTDEKHRLYLDSLEASFVQDLHQHRPMHALSPKQKMRRKPIRPDISSSELMVLQDASWQ 124

Query: 126 KANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRRLRNTT 185
           KANIGRNDPLLD TADSPAILEDL IN FPSAGKQC++ETPDLL EC SCSDRR +R  T
Sbjct: 125 KANIGRNDPLLDKTADSPAILEDLWINHFPSAGKQCSLETPDLLEECESCSDRRHIRYMT 184

Query: 186 TPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDSSVND 245
             C SAR+SQ   P   NS TIITEVSDQNFVDN P E S  MP+AKR KKA+SD S + 
Sbjct: 185 NSCRSARNSQPTRPCCCNSYTIITEVSDQNFVDNQPGELSSGMPIAKRLKKASSDFSDSA 244

Query: 246 QVVPYKRLS 247
           QVVP+KRLS
Sbjct: 245 QVVPFKRLS 253

[Close]

BLAST of Sed0006191 vs. ExPASy TrEMBL
Match: A0A6J1GJA3 (uncharacterized protein LOC111454842 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454842 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.4e-69
Identity = 158/257 (61.48%), Postives = 183/257 (71.21%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQL 65
           H PSS+SPP      DR  P   SA+D +       SSS TVDA         S    QL
Sbjct: 5   HTPSSMSPP----VADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 64

Query: 66  DAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVE 125
           DAVQTHWT+EKHR ++DSLEA+FVQ LH+     ALSSKQK+R+KP +P +SSSE MV++
Sbjct: 65  DAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSESMVLQ 124

Query: 126 DALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRR 185
           DA   KAN+GR DPLLD TADSPAILED+ IN FPSAG QCT+ET D+L ECGSCSDR  
Sbjct: 125 DASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSH 184

Query: 186 LRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSD 245
           +RN T    SARSSQQIPP  R+S TI+TEVSDQNFVD HP E S   P+ KR KKA+SD
Sbjct: 185 IRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSD 244

Query: 246 SSVNDQVVPYKRLSSER 250
           SS N++V PYKRLSSER
Sbjct: 245 SSGNNRVAPYKRLSSER 257

[Close]

BLAST of Sed0006191 vs. ExPASy TrEMBL
Match: A0A6J1I9R8 (uncharacterized protein LOC111470946 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470946 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 9.2e-67
Identity = 156/257 (60.70%), Postives = 178/257 (69.26%), Query Frame = 0


Query: 6   HAPSSLSPPPPPTAVDRPPP---SATDFS-------SSSITVDAF---ARFPNSLRRLQL 65
           H PSS+SPP      DR      SA+D +       SSS TVDA         S    QL
Sbjct: 5   HTPSSMSPP----VADRESSMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQL 64

Query: 66  DAVQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVE 125
           DAVQTHWTDEKHR ++D+LEA+FVQ LH+     A SSKQK+R+KP +P +SSSE MV++
Sbjct: 65  DAVQTHWTDEKHRLFLDALEASFVQDLHRYRHLRAFSSKQKMRRKPIMPNISSSESMVLQ 124

Query: 126 DALPPKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSDRRR 185
           DA   KANIGR DPLL  TADSPAILED+ IN FPSAG Q T ET D+L ECGSCSDR  
Sbjct: 125 DASWQKANIGRTDPLLHKTADSPAILEDVWINHFPSAGNQRTPETTDVLEECGSCSDRSH 184

Query: 186 LRNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSD 245
           +RN T  C SARSSQQIPP  R+S TI+ EVSDQNFVD HP E SG  P+ KR KKA+SD
Sbjct: 185 IRNKTNSCQSARSSQQIPPCCRDSHTIVAEVSDQNFVDTHPGELSGGTPITKRLKKASSD 244

Query: 246 SSVNDQVVPYKRLSSER 250
           S  ND+V PYKRLSSER
Sbjct: 245 SLGNDRVAPYKRLSSER 257

[Close]

BLAST of Sed0006191 vs. TAIR 10
Match: AT5G42900.3 (cold regulated gene 27 )

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-09
Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = 0


Query: 55  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVV 114
           ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQLYNSL--GALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 115 EDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSD 174
            D    K N+ + +  ++     +S   L    I  +    K     T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 175 RRRLRNTTTPCGSARSSQQIPPRSR--NSITIITEVSDQNFVDNHPREGSGCMPMAKRFK 234
            ++        GSA S +Q+   SR  + I++  EVSDQNFV+   +  +G    +K+ K
Sbjct: 164 GKK---GICSSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKGENG---SSKKMK 223

Query: 235 KA-TSDSSVNDQVVPYKRL 246
               S+SS  DQVVP  +L
Sbjct: 224 TVMMSESSSTDQVVPLNKL 234

[Close]

BLAST of Sed0006191 vs. TAIR 10
Match: AT5G42900.1 (cold regulated gene 27 )

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-08
Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 55  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVV 114
           ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQLYNSL--GALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 115 EDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSD 174
            D    K N+ + +  ++     +S   L    I  +    K     T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 175 RRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRF 234
            ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ 
Sbjct: 164 GKK---GICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG---SSKKM 223

Query: 235 KKA-TSDSSVNDQVVPYKRL 246
           K    S+SS  DQVVP  +L
Sbjct: 224 KTVMMSESSSTDQVVPLNKL 235

[Close]

BLAST of Sed0006191 vs. TAIR 10
Match: AT5G42900.2 (cold regulated gene 27 )

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-08
Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 55  VQTHWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNI---PKMSSSELMVV 114
           ++T WT+EKH  Y+ S+EA+FV QL+ ++   AL   + + +        K S  +  V+
Sbjct: 44  METEWTNEKHSLYLKSMEASFVDQLYNSL--GALGKNENVSESTRFGSGRKPSQEQFKVL 103

Query: 115 EDALPPKANIGRNDPLLDST--ADSPAILEDLRINRFPSAGKQCTMETPDLLGECGSCSD 174
            D    K N+ + +  ++     +S   L    I  +    K     T +   +  S S+
Sbjct: 104 HDGFWQKINVKQPEHRINGRHGGNSHEFLRSPWIKHYKPLVKTQIPVTDEPENQVVSSSN 163

Query: 175 RRRLRNTTTPCGSARSSQQIPPRSRNSITII---TEVSDQNFVDNHPREGSGCMPMAKRF 234
            ++        GSA S +Q+   SR+   I     EVSDQNFV+   +  +G    +K+ 
Sbjct: 164 GKK---GICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFVNEGIKGENG---SSKKM 223

Query: 235 KKA-TSDSSVNDQVVPYKRL 246
           K    S+SS  DQVVP  +L
Sbjct: 224 KTVMMSESSSTDQVVPLNKL 235

[Close]

BLAST of Sed0006191 vs. TAIR 10
Match: AT4G33980.1 (BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 48/191 (25.13%), Postives = 80/191 (41.88%), Query Frame = 0


Query: 57  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALP 116
           T WT+EKH SY+D LE++FV+QL+ ++         + R   +    S+ +  V+++   
Sbjct: 56  TAWTNEKHNSYLDYLESSFVRQLY-SLLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCW 115

Query: 117 PKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETP---DLLGECGSCSDRRRL 176
            K N G+    L+++++       LR N+  ++    TM T    D+L     C D    
Sbjct: 116 QKVNFGKKQSCLETSSEFRFHRNSLR-NKPENSNGNYTMGTTVQGDVL-----CHDE--- 175

Query: 177 RNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDS 236
                                   T  +E S QNF +    E  G +   +  +    DS
Sbjct: 176 ------------------------TKHSEASGQNFREEEEEEEKGEVSKKREREANNDDS 212

Query: 237 SV-NDQVVPYK 244
           S+  DQVVP +
Sbjct: 236 SLKEDQVVPVR 212

[Close]

BLAST of Sed0006191 vs. TAIR 10
Match: AT4G33980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3). )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 48/191 (25.13%), Postives = 80/191 (41.88%), Query Frame = 0


Query: 57  THWTDEKHRSYVDSLEATFVQQLHQNIRFHALSSKQKIRQKPNIPKMSSSELMVVEDALP 116
           T WT+EKH SY+D LE++FV+QL+ ++         + R   +    S+ +  V+++   
Sbjct: 56  TAWTNEKHNSYLDYLESSFVRQLY-SLLGGGTQRLSRTRDVQSNSHKSADQFTVLQNGCW 115

Query: 117 PKANIGRNDPLLDSTADSPAILEDLRINRFPSAGKQCTMETP---DLLGECGSCSDRRRL 176
            K N G+    L+++++       LR N+  ++    TM T    D+L     C D    
Sbjct: 116 QKVNFGKKQSCLETSSEFRFHRNSLR-NKPENSNGNYTMGTTVQGDVL-----CHDE--- 175

Query: 177 RNTTTPCGSARSSQQIPPRSRNSITIITEVSDQNFVDNHPREGSGCMPMAKRFKKATSDS 236
                                   T  +E S QNF +    E  G +   +  +    DS
Sbjct: 176 ------------------------TKHSEASGQNFREEEEEEEKGEVSKKREREANNDDS 212

Query: 237 SV-NDQVVPYK 244
           S+  DQVVP +
Sbjct: 236 SLKEDQVVPVR 212

The following BLAST results are available for this feature:

BLAST of Sed0006191 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529516.1	1.1e-79	67.68	uncharacterized protein LOC111792349 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038887003.1	5.7e-79	67.73	cold-regulated protein 27 isoform X1 [Benincasa hispida]	[more]
KAG7022450.1	4.8e-78	67.30	hypothetical protein SDJN02_16181, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008454952.1	1.4e-74	66.67	PREDICTED: uncharacterized protein LOC103495241 isoform X1 [Cucumis melo]	[more]
KAA0031301.1	1.7e-70	65.98	Cold regulated protein 27, putative isoform 2 [Cucumis melo var. makuwa] >TYK067...	[more]

BLAST of Sed0006191 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8T7	6.0e-07	28.50	Cold-regulated protein 27 OS=Arabidopsis thaliana OX=3702 GN=COR27 PE=1 SV=1	[more]

BLAST of Sed0006191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZU8	7.0e-75	66.67	uncharacterized protein LOC103495241 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C4A3	8.0e-71	65.98	Cold regulated protein 27, putative isoform 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0K7Z2	3.0e-70	64.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G073620 PE=4 SV=1	[more]
A0A6J1GJA3	4.4e-69	61.48	uncharacterized protein LOC111454842 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I9R8	9.2e-67	60.70	uncharacterized protein LOC111470946 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0006191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42900.3	6.6e-09	28.64	cold regulated gene 27	[more]
AT5G42900.1	4.3e-08	28.50	cold regulated gene 27	[more]
AT5G42900.2	4.3e-08	28.50	cold regulated gene 27	[more]
AT4G33980.1	1.3e-04	25.13	BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G429...	[more]
AT4G33980.2	1.3e-04	25.13	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOC...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..249
None	No IPR available	PANTHER	PTHR33676:SF17	REGULATED GENE 27, PUTATIVE ISOFORM 2-RELATED	coord: 14..246
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 14..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006191.1	Sed0006191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold