Sed0006164 (gene) Chayote v1

Overview


Name	Sed0006164
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 2844319 .. 2844525 (-)
RNA-Seq Expression	Sed0006164
Synteny	Sed0006164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTCTCTTGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGACGGCAGCAAGCGCCGGGAACCTGCCCGTTCTGTCGAGGCAAAGTGTACGCCATCGACATCGAACGGCGATGGAAGCTCTGTTGCCTTCCTCTCTGCCTCACGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

mRNA sequence

ATGTGGCTCTCTTGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGACGGCAGCAAGCGCCGGGAACCTGCCCGTTCTGTCGAGGCAAAGTGTACGCCATCGACATCGAACGGCGATGGAAGCTCTGTTGCCTTCCTCTCTGCCTCACGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Coding sequence (CDS)

ATGTGGCTCTCTTGCGTATGGGAAGAGAAAGAGCAAGAGCTCGGACGGCAGCAAGCGCCGGGAACCTGCCCGTTCTGTCGAGGCAAAGTGTACGCCATCGACATCGAACGGCGATGGAAGCTCTGTTGCCTTCCTCTCTGCCTCACGATCAAGAGGAAGTATCTCTGTACTCTCTGTTCTCGCCGCCTCGAATTGTGCCACTGGTAG

Protein sequence

MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCSRRLELCHW

Homology

[Close]

BLAST of Sed0006164 vs. NCBI nr
Match: XP_022933136.1 (uncharacterized protein LOC111439917 [Cucurbita moschata] >XP_023005786.1 uncharacterized protein LOC111498677 [Cucurbita maxima] >XP_023531340.1 uncharacterized protein LOC111793612 [Cucurbita pepo subsp. pepo] >KAG7021692.1 hypothetical protein SDJN02_15418, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFCRGKVYAID+ER+WKLCCLPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. NCBI nr
Match: XP_038879931.1 (uncharacterized protein LOC120071640 [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 7.1e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKE+ELGRQQAPGTCPFC+GKVYAID+ERRWKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKERELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. NCBI nr
Match: XP_004146338.1 (uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED: uncharacterized protein LOC103494230 [Cucumis melo] >KAA0058206.1 uncharacterized protein E6C27_scaffold274G005270 [Cucumis melo var. makuwa] >KGN65493.1 hypothetical protein Csa_019621 [Cucumis sativus] >TYK28570.1 uncharacterized protein E5676_scaffold629G002170 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 7.1e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFC+GKVYAID+ER+WKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. NCBI nr
Match: XP_022135123.1 (uncharacterized protein LOC111007177 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 7.1e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKE+ELGRQQAPGTCPFC+GKVYAID+ERRWKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. NCBI nr
Match: XP_022921752.1 (uncharacterized protein LOC111429909 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVW+EKE+ELGRQQAPGTCPFCRGKV+AID+ERRWKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWDEKEKELGRQQAPGTCPFCRGKVHAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. ExPASy TrEMBL
Match: A0A6J1KVZ2 (uncharacterized protein LOC111498677 OS=Cucurbita maxima OX=3661 GN=LOC111498677 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFCRGKVYAID+ER+WKLCCLPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. ExPASy TrEMBL
Match: A0A6J1EYA6 (uncharacterized protein LOC111439917 OS=Cucurbita moschata OX=3662 GN=LOC111439917 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFCRGKVYAID+ER+WKLCCLPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCRGKVYAIDVERQWKLCCLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. ExPASy TrEMBL
Match: A0A5D3DZA2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002170 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.4e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFC+GKVYAID+ER+WKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. ExPASy TrEMBL
Match: A0A0A0LUS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.4e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKEQELGRQQAPGTCPFC+GKVYAID+ER+WKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEQELGRQQAPGTCPFCQGKVYAIDVERQWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. ExPASy TrEMBL
Match: A0A6J1C3X8 (uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007177 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.4e-32
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          MWL+CVWEEKE+ELGRQQAPGTCPFC+GKVYAID+ERRWKLC LPLCL IKRKYLCTLCS
Sbjct: 1  MWLACVWEEKEKELGRQQAPGTCPFCQGKVYAIDVERRWKLCFLPLCLKIKRKYLCTLCS 60

Query: 61 RRLELCHW 69
          RRLELCHW
Sbjct: 61 RRLELCHW 68

[Close]

BLAST of Sed0006164 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-20
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          M L C+ +E+E ELGRQQAPG+CP+C GKV  +D+ER+W  C +PLC  IKRKY C+ C 
Sbjct: 1  MCLVCLCDEEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCD 60

Query: 61 RRLELCH 68
          RRL L H
Sbjct: 61 RRLVLYH 67

[Close]

BLAST of Sed0006164 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-18
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          M L  V+ E++ ELGRQQAPG CP+C GKV A+DIE +W  C LPLC  +KRKY C+ C 
Sbjct: 1  MCLEVVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCE 60

Query: 61 RRLEL 66
          R L L
Sbjct: 61 RHLVL 65

[Close]

BLAST of Sed0006164 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-11
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1  MWLSCVWEEKEQELGRQQAPGTCPFCRGKVYAIDIERRWKLCCLPLCLTIKRKYLCTLCS 60
          M L  V ++ E+ +GR  APG CP+C G V  +D+  +W+ C +PL    KR++LC+ C 
Sbjct: 1  MCLVFVCDQDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCG 60

Query: 61 RRL 64
          +RL
Sbjct: 61 KRL 63

The following BLAST results are available for this feature:

BLAST of Sed0006164 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933136.1	1.3e-33	94.12	uncharacterized protein LOC111439917 [Cucurbita moschata] >XP_023005786.1 unchar...	[more]
XP_038879931.1	7.1e-32	91.18	uncharacterized protein LOC120071640 [Benincasa hispida]	[more]
XP_004146338.1	7.1e-32	91.18	uncharacterized protein LOC101203895 [Cucumis sativus] >XP_008453548.1 PREDICTED...	[more]
XP_022135123.1	7.1e-32	91.18	uncharacterized protein LOC111007177 [Momordica charantia]	[more]
XP_022921752.1	2.1e-31	89.71	uncharacterized protein LOC111429909 [Cucurbita moschata]	[more]

BLAST of Sed0006164 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVZ2	6.2e-34	94.12	uncharacterized protein LOC111498677 OS=Cucurbita maxima OX=3661 GN=LOC111498677...	[more]
A0A6J1EYA6	6.2e-34	94.12	uncharacterized protein LOC111439917 OS=Cucurbita moschata OX=3662 GN=LOC1114399...	[more]
A0A5D3DZA2	3.4e-32	91.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LUS9	3.4e-32	91.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426700 PE=4 SV=1	[more]
A0A6J1C3X8	3.4e-32	91.18	uncharacterized protein LOC111007177 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Sed0006164 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57123.1	3.0e-20	59.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	3.6e-18	58.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10695.1	1.9e-11	41.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 7..65
None	No IPR available	PANTHER	PTHR33320:SF13	SUBFAMILY NOT NAMED	coord: 7..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006164.1	Sed0006164.1	mRNA