Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGGTTCTCGTTCGAATCTTCGACTTCTCCATTTTCGTCTGCTACTGGTTTCCCTGTTTTATTTTCCTCCTCCTCAAACACTAGCTCCTCTTCCTCTGCATTTTCCAATCAAATCTCCAATCCTGCCCTTTCCGGTCCCTTCTGCTTTGGGTCTTCCTCTTCGTCTGCACCCTTGTTTGCGACTACCCCATTCTCTGGGAGCTCGTCTGCGCCCTTGTTTGAGGCTGCTCCATCTCTCGGGACCTCGGGTTTGCCCTTGTTTGGAGGGGTATCTTCTACAACTACATCTAGTGCACCATTGTTTGGTACTTCTGCTTCCACTGGAAGTCCTGGGTCAACTTTTCTTGTTGCTTCTGCATTTGCTTCAGGCTTTAGTTCTCCCCTTTTTGGCACAGGTTTAACTTTGTTCGGGTCTCATCCCTTAGGTACATCTTTTTCGGGCGTGTTGCCTTCAATCTCCACTTCAAACTTGTTTGTGTCATCTTCATTGTCGGCATCCACTACATTCCAAAAATCTCCTTTTTCGAGTTCTTCCCTGGATTTGAGTTGGTCTTCACCATTTGCGACATCTACTTCTTCTGGGTTTGCATATTCGGCGTCTTCCCAGTCCAAAACTACCAGTCTTACTACTACATCTTCATCTATTACATCAGCTTCAACTAGTTGGTCAAGCTTCTCATTTGGTACACCTGGTTTGTCAGCCTCCCATTCTTCTTTTTGGTTTAGGATTAGCAATGCAGCTTCGATGGGAGAGTCTACTGCTCTGAGCACTACATGTACAAAGTCTACTTCTCTATCGTTTTTTACTTCTGCTGCACCTTTATTCTCTATGGTTACATCCACCAGTGCTTCTACTCCAGCTGGTAACAACAGAACTCAAACATCCTTCTCGTCACCAGCTATTAGTTTGAGTTCTTCAGCTGACACTACCTTACGGATAGCAGCATCTTCTGCTTCATCAGTTGCTTCCTCAAGCGTTTCGAGTTCCTTAACAAGTTTCGGAATTACAAACACGACTTCATCTTCAAGTGAAATTTCTTCCTTATCCTTTCCAACCAAAACATTGTCTTCTGCTTCATCATTGCAAGATACTGCCTCTTTTGGTAAGTTCTCCCCTTCATTTATTTTGTGA
mRNA sequence
ATGTCGGGGTTCTCGTTCGAATCTTCGACTTCTCCATTTTCGTCTGCTACTGGTTTCCCTGTTTTATTTTCCTCCTCCTCAAACACTAGCTCCTCTTCCTCTGCATTTTCCAATCAAATCTCCAATCCTGCCCTTTCCGGTCCCTTCTGCTTTGGGTCTTCCTCTTCGTCTGCACCCTTGTTTGCGACTACCCCATTCTCTGGGAGCTCGTCTGCGCCCTTGTTTGAGGCTGCTCCATCTCTCGGGACCTCGGGTTTGCCCTTGTTTGGAGGGGTATCTTCTACAACTACATCTAGTGCACCATTGTTTGGTACTTCTGCTTCCACTGGAAGTCCTGGGTCAACTTTTCTTGTTGCTTCTGCATTTGCTTCAGGCTTTAGTTCTCCCCTTTTTGGCACAGGTTTAACTTTGTTCGGGTCTCATCCCTTAGGTACATCTTTTTCGGGCGTGTTGCCTTCAATCTCCACTTCAAACTTGTTTGTGTCATCTTCATTGTCGGCATCCACTACATTCCAAAAATCTCCTTTTTCGAGTTCTTCCCTGGATTTGAGTTGGTCTTCACCATTTGCGACATCTACTTCTTCTGGGTTTGCATATTCGGCGTCTTCCCAGTCCAAAACTACCAGTCTTACTACTACATCTTCATCTATTACATCAGCTTCAACTAGTTGGTCAAGCTTCTCATTTGGTACACCTGGTTTGTCAGCCTCCCATTCTTCTTTTTGGTTTAGGATTAGCAATGCAGCTTCGATGGGAGAGTCTACTGCTCTGAGCACTACATGTACAAAGTCTACTTCTCTATCGTTTTTTACTTCTGCTGCACCTTTATTCTCTATGGTTACATCCACCAGTGCTTCTACTCCAGCTGGTAACAACAGAACTCAAACATCCTTCTCGTCACCAGCTATTAGTTTGAGTTCTTCAGCTGACACTACCTTACGGATAGCAGCATCTTCTGCTTCATCAGTTGCTTCCTCAAGCGTTTCGAGTTCCTTAACAAGTTTCGGAATTACAAACACGACTTCATCTTCAAGTGAAATTTCTTCCTTATCCTTTCCAACCAAAACATTGTCTTCTGCTTCATCATTGCAAGATACTGCCTCTTTTGGTAAGTTCTCCCCTTCATTTATTTTGTGA
Coding sequence (CDS)
ATGTCGGGGTTCTCGTTCGAATCTTCGACTTCTCCATTTTCGTCTGCTACTGGTTTCCCTGTTTTATTTTCCTCCTCCTCAAACACTAGCTCCTCTTCCTCTGCATTTTCCAATCAAATCTCCAATCCTGCCCTTTCCGGTCCCTTCTGCTTTGGGTCTTCCTCTTCGTCTGCACCCTTGTTTGCGACTACCCCATTCTCTGGGAGCTCGTCTGCGCCCTTGTTTGAGGCTGCTCCATCTCTCGGGACCTCGGGTTTGCCCTTGTTTGGAGGGGTATCTTCTACAACTACATCTAGTGCACCATTGTTTGGTACTTCTGCTTCCACTGGAAGTCCTGGGTCAACTTTTCTTGTTGCTTCTGCATTTGCTTCAGGCTTTAGTTCTCCCCTTTTTGGCACAGGTTTAACTTTGTTCGGGTCTCATCCCTTAGGTACATCTTTTTCGGGCGTGTTGCCTTCAATCTCCACTTCAAACTTGTTTGTGTCATCTTCATTGTCGGCATCCACTACATTCCAAAAATCTCCTTTTTCGAGTTCTTCCCTGGATTTGAGTTGGTCTTCACCATTTGCGACATCTACTTCTTCTGGGTTTGCATATTCGGCGTCTTCCCAGTCCAAAACTACCAGTCTTACTACTACATCTTCATCTATTACATCAGCTTCAACTAGTTGGTCAAGCTTCTCATTTGGTACACCTGGTTTGTCAGCCTCCCATTCTTCTTTTTGGTTTAGGATTAGCAATGCAGCTTCGATGGGAGAGTCTACTGCTCTGAGCACTACATGTACAAAGTCTACTTCTCTATCGTTTTTTACTTCTGCTGCACCTTTATTCTCTATGGTTACATCCACCAGTGCTTCTACTCCAGCTGGTAACAACAGAACTCAAACATCCTTCTCGTCACCAGCTATTAGTTTGAGTTCTTCAGCTGACACTACCTTACGGATAGCAGCATCTTCTGCTTCATCAGTTGCTTCCTCAAGCGTTTCGAGTTCCTTAACAAGTTTCGGAATTACAAACACGACTTCATCTTCAAGTGAAATTTCTTCCTTATCCTTTCCAACCAAAACATTGTCTTCTGCTTCATCATTGCAAGATACTGCCTCTTTTGGTAAGTTCTCCCCTTCATTTATTTTGTGA
Protein sequence
MSGFSFESSTSPFSSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSAPLFATTPFSGSSSAPLFEAAPSLGTSGLPLFGGVSSTTTSSAPLFGTSASTGSPGSTFLVASAFASGFSSPLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTTFQKSPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLTTTSSSITSASTSWSSFSFGTPGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSFPTKTLSSASSLQDTASFGKFSPSFIL
Homology
BLAST of Sed0006153 vs. NCBI nr
Match:
XP_038874708.1 (nuclear pore complex protein NUP62 [Benincasa hispida])
HSP 1 Score: 254.6 bits (649), Expect = 1.3e-63
Identity = 242/438 (55.25%), Postives = 268/438 (61.19%), Query Frame = 0
Query: 2 SGFSFESSTSPF---SSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSS--- 61
+GFSF STS F SS+T + SSSSN +SSSS FSNQ NPA S FGSSS
Sbjct: 24 TGFSF-GSTSAFSFGSSSTPLSLSSSSSSNPTSSSSPFSNQTPNPASSSSSGFGSSSFPS 83
Query: 62 ---------------------SSAPLFATT----------------------------PF 121
SSAPLF + P
Sbjct: 84 SASSPFSFSLPLFGSAPSSGTSSAPLFGSASSSGSSPAPSFGPASSSGSSLVPSFGALPS 143
Query: 122 SGSSSAPLFEAAPSLGTSGLPLFGGVSSTTTSSAPLFG-TSASTGSPGSTFLVASAFASG 181
SGSSSAPLF A PS G S LFGGVSS TTSSAPLFG TSAST SPGS AS ASG
Sbjct: 144 SGSSSAPLFGATPSAGASAPSLFGGVSSATTSSAPLFGTTSASTASPGSALFGASVAASG 203
Query: 182 FSSPLFGT-------GLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQKSPFS 241
SS LFGT G LFGS P G S S+STSNLF SSS S ST+ FQ S S
Sbjct: 204 SSSSLFGTSTTSGSSGSALFGSSPFGAS-----SSLSTSNLFASSSSSTSTSPFQNSFSS 263
Query: 242 SSSLDLSWSSPFA---TSTSSGFAYSASSQSKTTSLTT--TSSSITSASTSWSSFSFGTP 301
SSS +L+ SS FA +S+SSGF++S S SKTTS+TT +SSS+T+ASTS SSFSFGTP
Sbjct: 264 SSSQNLNSSSLFAASSSSSSSGFSFSTVSLSKTTSITTASSSSSLTTASTSSSSFSFGTP 323
Query: 302 GLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNN 361
SAS SSF F ISNAAS G S+A STT TK TSLS +S APLFS VT+TS STPA N+
Sbjct: 324 ASSASQSSFGFSISNAASTGGSSAPSTTATKPTSLSLSSSVAPLFSTVTTTSGSTPAANS 383
Query: 362 RTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSF 371
TQ SFS PA S SSSA TTL IAASS S +SS SS T FG+T+ SSSS I SLS
Sbjct: 384 TTQPSFSVPAFSSSSSAATTLSIAASSVPSASSSGAVSSFTGFGVTSMASSSSAIGSLSL 443
BLAST of Sed0006153 vs. NCBI nr
Match:
XP_023006514.1 (nuclear pore complex protein NUP62 [Cucurbita maxima])
HSP 1 Score: 247.7 bits (631), Expect = 1.6e-61
Identity = 222/379 (58.58%), Postives = 260/379 (68.60%), Query Frame = 0
Query: 2 SGFSFES--STSPFSSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSS----S 61
SG SF ++P S ++ P ++ ++ SS + F + S+ + P FG+S S
Sbjct: 155 SGTSFAPLFGSAPSSGSSPVPSFGAAPASGSSVAPLFGSAPSSGSSPLP-SFGASPSAGS 214
Query: 62 SSAPLFATTPFSGSSSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGS 121
S P F SGSSS+P F AAPS+GTS LFGGVSS TTSSAPLFGTSA T SPGS
Sbjct: 215 SPLPSFGAASSSGSSSSPFFGAAPSVGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGS 274
Query: 122 TFLVASAFASGFSSPLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQK 181
+ ASA ASG SS +LFGS+ +S SG L S+STSNLF SSS SASTT FQ
Sbjct: 275 SIFGASAAASGSSS-------SLFGSNSFASSSSGTLSSVSTSNLFGSSSSSASTTPFQN 334
Query: 182 SPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGT 241
S SSSS +LS SSPFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGT
Sbjct: 335 SFSSSSSQNLSSSSPFAAS-SSGFSFSTTSLSKTTSITVASSSSSLTSASTSSSSFSFGT 394
Query: 242 PGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGN 301
P SAS SSF F ISNAAS+ S+A TT K TSLSF TS APLFS VT+TSASTPA
Sbjct: 395 PASSASQSSFGFNISNAASLEGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAAT 454
Query: 302 NRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLS 361
+ Q SFS PA SLSSSA TTL IAASSA S SS +SS T FGIT+T +SSS I SLS
Sbjct: 455 STAQPSFSMPAFSLSSSAATTLSIAASSAPSATSSGAASSFTGFGITSTAASSSAIVSLS 514
Query: 362 FPTKTLSSASSLQDTASFG 371
PTK+L++ASS Q ASFG
Sbjct: 515 LPTKSLTAASSSQAPASFG 524
BLAST of Sed0006153 vs. NCBI nr
Match:
XP_022959229.1 (nuclear pore complex protein NUP62 isoform X2 [Cucurbita moschata])
HSP 1 Score: 244.2 bits (622), Expect = 1.8e-60
Identity = 215/365 (58.90%), Postives = 245/365 (67.12%), Query Frame = 0
Query: 14 SSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSA----PLFATTPFSGS 73
+S T F LF S+ ++ SS S FGS+ SS P F P +GS
Sbjct: 154 ASGTSFAPLFGSAPSSGSSPVPSFGAAPGSGSSVAPLFGSAPSSGSSPLPSFGAAPSAGS 213
Query: 74 SSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGSTFLVASAFASGFSS 133
SS+P F AAPS GTS LFGGVSS TTSSAPLFGTSA T SPGS+ AS ASG SS
Sbjct: 214 SSSPFFGAAPSAGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGSSIFGASTAASGSSS 273
Query: 134 PLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQKSPFSSSSLDLSWSS 193
+LFGS+P +S S+STSNLF SSS SASTT FQ S SSSS +LS SS
Sbjct: 274 -------SLFGSNPFASS-----SSVSTSNLFGSSSSSASTTPFQNSFSSSSSQNLSSSS 333
Query: 194 PFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGTPGLSASHSSFWFRI 253
PFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGTP SAS SSF F I
Sbjct: 334 PFAAS-SSGFSFSTTSLSKTTSITAASSSSSLTSASTSSSSFSFGTPASSASQSSFGFSI 393
Query: 254 SNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISL 313
SNAAS G S+A TT K TSLSF TS APLFS VT+TSASTPA + Q SFS PA SL
Sbjct: 394 SNAASTGGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAATSTAQPSFSMPAFSL 453
Query: 314 SSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSFPTKTLSSASSLQD 371
SSSA TTL IAASS S SS +SS T FG+T+T +SSS I SLS PTK+L++ASS Q
Sbjct: 454 SSSAATTLSIAASSVPSTTSSGAASSFTGFGVTSTAASSSAIVSLSLPTKSLTAASSSQA 505
BLAST of Sed0006153 vs. NCBI nr
Match:
XP_022959228.1 (nuclear pore complex protein NUP62 isoform X1 [Cucurbita moschata])
HSP 1 Score: 244.2 bits (622), Expect = 1.8e-60
Identity = 215/365 (58.90%), Postives = 245/365 (67.12%), Query Frame = 0
Query: 14 SSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSA----PLFATTPFSGS 73
+S T F LF S+ ++ SS S FGS+ SS P F P +GS
Sbjct: 154 ASGTSFAPLFGSAPSSGSSPVPSFGAAPGSGSSVAPLFGSAPSSGSSPLPSFGAAPSAGS 213
Query: 74 SSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGSTFLVASAFASGFSS 133
SS+P F AAPS GTS LFGGVSS TTSSAPLFGTSA T SPGS+ AS ASG SS
Sbjct: 214 SSSPFFGAAPSAGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGSSIFGASTAASGSSS 273
Query: 134 PLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQKSPFSSSSLDLSWSS 193
+LFGS+P +S S+STSNLF SSS SASTT FQ S SSSS +LS SS
Sbjct: 274 -------SLFGSNPFASS-----SSVSTSNLFGSSSSSASTTPFQNSFSSSSSQNLSSSS 333
Query: 194 PFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGTPGLSASHSSFWFRI 253
PFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGTP SAS SSF F I
Sbjct: 334 PFAAS-SSGFSFSTTSLSKTTSITAASSSSSLTSASTSSSSFSFGTPASSASQSSFGFSI 393
Query: 254 SNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISL 313
SNAAS G S+A TT K TSLSF TS APLFS VT+TSASTPA + Q SFS PA SL
Sbjct: 394 SNAASTGGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAATSTAQPSFSMPAFSL 453
Query: 314 SSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSFPTKTLSSASSLQD 371
SSSA TTL IAASS S SS +SS T FG+T+T +SSS I SLS PTK+L++ASS Q
Sbjct: 454 SSSAATTLSIAASSVPSTTSSGAASSFTGFGVTSTAASSSAIVSLSLPTKSLTAASSSQA 505
BLAST of Sed0006153 vs. NCBI nr
Match:
XP_008459731.1 (PREDICTED: nuclear pore complex protein NUP62 [Cucumis melo])
HSP 1 Score: 243.8 bits (621), Expect = 2.4e-60
Identity = 216/387 (55.81%), Postives = 250/387 (64.60%), Query Frame = 0
Query: 14 SSATGFPVL-FSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSAPLFATTPFSGS--- 73
SS+TGF F +SS++++SS+ S+ S FG+ SS AP F P SGS
Sbjct: 120 SSSTGFNSFGFGASSSSANSSAPLFGAASSSGTSSASLFGAGSSPAPSFGAAPSSGSSVA 179
Query: 74 ------------SSAPLFEAAPSLGTSGLP-LFGGVSSTTTSSAPLFGTSASTGSPGSTF 133
SSAPLF AAPS G S P LFGG SS TTSSAPLFGT+AS S GS
Sbjct: 180 PSFGALSSSAGTSSAPLFGAAPSAGASSAPSLFGGASSATTSSAPLFGTAASAASSGSAL 239
Query: 134 LVASAFASGFSSPLFG--------TGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSAS 193
ASA ASG + LFG TG LFGS P G S SG S+STSNLF SS +S
Sbjct: 240 FGASAPASGSGASLFGTSAPSSGSTGSGLFGSSPFGASSSGTSSSVSTSNLFASS--LSS 299
Query: 194 TTFQKSPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLT-----TTSSSITSASTS 253
+ FQ S SSSS +L+ SSPFA S SGF++ S+ SKTTS+T ++SSS+T ASTS
Sbjct: 300 SPFQSSLSSSSSQNLTSSSPFAAS-PSGFSFPTSTLSKTTSITNVPSSSSSSSLTLASTS 359
Query: 254 WSSFSFGTPGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTST 313
SSFSFGTP S+S SSF F I+NAAS G S+A STT TK TSLS S APLFS VT+T
Sbjct: 360 SSSFSFGTPASSSSQSSFGFSINNAASTGGSSAPSTTATKPTSLSLSNSVAPLFSTVTTT 419
Query: 314 SASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSS 371
SASTPA ++ TQ SFS PA S SSSA TTL IAASSA S ASS SS T FG+T++ SS
Sbjct: 420 SASTPAASSTTQPSFSVPAFSSSSSAATTLSIAASSAPSAASSGTVSSFTGFGVTSSASS 479
BLAST of Sed0006153 vs. ExPASy Swiss-Prot
Match:
Q8L7F7 (Nuclear pore complex protein NUP62 OS=Arabidopsis thaliana OX=3702 GN=NUP62 PE=1 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 2.0e-06
Identity = 142/401 (35.41%), Postives = 196/401 (48.88%), Query Frame = 0
Query: 8 SSTSPFSSATGFPVLFSSSSNTSSSSSAFSNQISNPAL--SGPFCFGSSSSSAPLFATTP 67
SS +P SS GF V S+SS + SSS F S+ A S PF +S S PLF ++P
Sbjct: 132 SSAAPGSSPFGF-VTSSASSTATPSSSLFGAPASSAATPSSSPFGAAPASGSTPLFGSSP 191
Query: 68 FSGSSSAPLFEAAPSLGTSGLPLFGGVSSTTTSSAPLFGTSASTGSPGSTFLVASAFASG 127
LF A S S LFG SS TS++PLFG +S +F VAS+ A G
Sbjct: 192 -------SLFSAPSSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASS-APG 251
Query: 128 FSSPLFG-TGLTLFGSHPLGTSFSGVLPSI-----------------STSNLFVSSSLSA 187
SS +FG TG + S + +S SG PSI ST +LF SSS S
Sbjct: 252 SSSSIFGATGSS--PSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSLFASSS-SG 311
Query: 188 STTFQKSPF------SSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLTTTSSSITSAS 247
+TT SPF SSS+ + S +S S S+GF++ S+ S TTS TT S+ +AS
Sbjct: 312 ATTSSPSPFGVSTFNSSSTSNTSNASASPFSASTGFSFLKSTASSTTSSTTPSAPPQTAS 371
Query: 248 TSWSSFSFGTPGLSASHSSFWFRISNAASMGEST-----ALSTTCTKSTSLSFFTSAA-- 307
+S SSFSFGT +++S F ++A+ ST +++TT T S+S TSA
Sbjct: 372 SS-SSFSFGT----SANSGFNLSTGSSAAPASSTSGAVFSIATTTTTSSSTPAATSAPAS 431
Query: 308 ---------PLFSMVTSTSASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVAS 367
P F + +S + +TPA + T FS+ L+SS T + + +V
Sbjct: 432 SAPASTMAFPSFGVTSSATNTTPASSAAT---FSTTGFGLASSTPATGSTNSFTGFAVPK 491
BLAST of Sed0006153 vs. ExPASy Swiss-Prot
Match:
Q75JC9 (Uncharacterized protein DDB_G0271670 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0271670 PE=3 SV=1)
HSP 1 Score: 50.1 bits (118), Expect = 6.6e-05
Identity = 111/331 (33.53%), Postives = 193/331 (58.31%), Query Frame = 0
Query: 21 VLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSAPLFATTPFSGSSSAPLFEAAPS 80
+L +SSS++SSSSS+ S+ S+ + S SSSSS+ +++ S SSS+ ++ S
Sbjct: 62 ILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 121
Query: 81 LGTSGLPLFGGVSSTTTSSAPLFGTSASTGSPGSTFLVASAFASGFSSPLFGTGLTLFGS 140
+S SS+++SS+ +S+S+ S S+ +S+ +S SS
Sbjct: 122 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------ 181
Query: 141 HPLGTSFSGVLPSISTSNLFVSSSLSASTTFQKSPFSSSSLDLSWSSPFATSTSSGFAYS 200
+S S S S+S+ SSS S+S++ S SSSS S SS ++S+SS + S
Sbjct: 182 ----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 241
Query: 201 ASSQSKTTSLTTTSSSITSASTSWSSFSFGTPGLSASHSSFWFRISNAASMGESTALSTT 260
+SS S ++S +++SSS +S+S+S SS S + S+S SS S+++S S++ S++
Sbjct: 242 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSSSSSSSSSSSSSS 301
Query: 261 CTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSA 320
+ S+S S +S++ S +S+S+S+ + ++ + +S SS + S SSS+ ++ ++SS+
Sbjct: 302 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 361
Query: 321 SSVASSSVSSSLTSFGITNTTSSSSEISSLS 352
SS +SSS SSS +S ++++SSSS SS S
Sbjct: 362 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 371
BLAST of Sed0006153 vs. ExPASy TrEMBL
Match:
A0A6J1L2D4 (nuclear pore complex protein NUP62 OS=Cucurbita maxima OX=3661 GN=LOC111499220 PE=3 SV=1)
HSP 1 Score: 247.7 bits (631), Expect = 7.9e-62
Identity = 222/379 (58.58%), Postives = 260/379 (68.60%), Query Frame = 0
Query: 2 SGFSFES--STSPFSSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSS----S 61
SG SF ++P S ++ P ++ ++ SS + F + S+ + P FG+S S
Sbjct: 155 SGTSFAPLFGSAPSSGSSPVPSFGAAPASGSSVAPLFGSAPSSGSSPLP-SFGASPSAGS 214
Query: 62 SSAPLFATTPFSGSSSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGS 121
S P F SGSSS+P F AAPS+GTS LFGGVSS TTSSAPLFGTSA T SPGS
Sbjct: 215 SPLPSFGAASSSGSSSSPFFGAAPSVGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGS 274
Query: 122 TFLVASAFASGFSSPLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQK 181
+ ASA ASG SS +LFGS+ +S SG L S+STSNLF SSS SASTT FQ
Sbjct: 275 SIFGASAAASGSSS-------SLFGSNSFASSSSGTLSSVSTSNLFGSSSSSASTTPFQN 334
Query: 182 SPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGT 241
S SSSS +LS SSPFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGT
Sbjct: 335 SFSSSSSQNLSSSSPFAAS-SSGFSFSTTSLSKTTSITVASSSSSLTSASTSSSSFSFGT 394
Query: 242 PGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGN 301
P SAS SSF F ISNAAS+ S+A TT K TSLSF TS APLFS VT+TSASTPA
Sbjct: 395 PASSASQSSFGFNISNAASLEGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAAT 454
Query: 302 NRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLS 361
+ Q SFS PA SLSSSA TTL IAASSA S SS +SS T FGIT+T +SSS I SLS
Sbjct: 455 STAQPSFSMPAFSLSSSAATTLSIAASSAPSATSSGAASSFTGFGITSTAASSSAIVSLS 514
Query: 362 FPTKTLSSASSLQDTASFG 371
PTK+L++ASS Q ASFG
Sbjct: 515 LPTKSLTAASSSQAPASFG 524
BLAST of Sed0006153 vs. ExPASy TrEMBL
Match:
A0A6J1H7F5 (nuclear pore complex protein NUP62 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460276 PE=3 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 215/365 (58.90%), Postives = 245/365 (67.12%), Query Frame = 0
Query: 14 SSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSA----PLFATTPFSGS 73
+S T F LF S+ ++ SS S FGS+ SS P F P +GS
Sbjct: 154 ASGTSFAPLFGSAPSSGSSPVPSFGAAPGSGSSVAPLFGSAPSSGSSPLPSFGAAPSAGS 213
Query: 74 SSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGSTFLVASAFASGFSS 133
SS+P F AAPS GTS LFGGVSS TTSSAPLFGTSA T SPGS+ AS ASG SS
Sbjct: 214 SSSPFFGAAPSAGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGSSIFGASTAASGSSS 273
Query: 134 PLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQKSPFSSSSLDLSWSS 193
+LFGS+P +S S+STSNLF SSS SASTT FQ S SSSS +LS SS
Sbjct: 274 -------SLFGSNPFASS-----SSVSTSNLFGSSSSSASTTPFQNSFSSSSSQNLSSSS 333
Query: 194 PFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGTPGLSASHSSFWFRI 253
PFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGTP SAS SSF F I
Sbjct: 334 PFAAS-SSGFSFSTTSLSKTTSITAASSSSSLTSASTSSSSFSFGTPASSASQSSFGFSI 393
Query: 254 SNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISL 313
SNAAS G S+A TT K TSLSF TS APLFS VT+TSASTPA + Q SFS PA SL
Sbjct: 394 SNAASTGGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAATSTAQPSFSMPAFSL 453
Query: 314 SSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSFPTKTLSSASSLQD 371
SSSA TTL IAASS S SS +SS T FG+T+T +SSS I SLS PTK+L++ASS Q
Sbjct: 454 SSSAATTLSIAASSVPSTTSSGAASSFTGFGVTSTAASSSAIVSLSLPTKSLTAASSSQA 505
BLAST of Sed0006153 vs. ExPASy TrEMBL
Match:
A0A6J1H5C8 (nuclear pore complex protein NUP62 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460276 PE=3 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 8.7e-61
Identity = 215/365 (58.90%), Postives = 245/365 (67.12%), Query Frame = 0
Query: 14 SSATGFPVLFSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSA----PLFATTPFSGS 73
+S T F LF S+ ++ SS S FGS+ SS P F P +GS
Sbjct: 154 ASGTSFAPLFGSAPSSGSSPVPSFGAAPGSGSSVAPLFGSAPSSGSSPLPSFGAAPSAGS 213
Query: 74 SSAPLFEAAPSLGTSGLPLFGGVSS-TTTSSAPLFGTSASTGSPGSTFLVASAFASGFSS 133
SS+P F AAPS GTS LFGGVSS TTSSAPLFGTSA T SPGS+ AS ASG SS
Sbjct: 214 SSSPFFGAAPSAGTSAPSLFGGVSSAATTSSAPLFGTSAPTASPGSSIFGASTAASGSSS 273
Query: 134 PLFGTGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSASTT-FQKSPFSSSSLDLSWSS 193
+LFGS+P +S S+STSNLF SSS SASTT FQ S SSSS +LS SS
Sbjct: 274 -------SLFGSNPFASS-----SSVSTSNLFGSSSSSASTTPFQNSFSSSSSQNLSSSS 333
Query: 194 PFATSTSSGFAYSASSQSKTTSLT--TTSSSITSASTSWSSFSFGTPGLSASHSSFWFRI 253
PFA S SSGF++S +S SKTTS+T ++SSS+TSASTS SSFSFGTP SAS SSF F I
Sbjct: 334 PFAAS-SSGFSFSTTSLSKTTSITAASSSSSLTSASTSSSSFSFGTPASSASQSSFGFSI 393
Query: 254 SNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISL 313
SNAAS G S+A TT K TSLSF TS APLFS VT+TSASTPA + Q SFS PA SL
Sbjct: 394 SNAASTGGSSAPGTTAAKPTSLSFSTSVAPLFSTVTTTSASTPAATSTAQPSFSMPAFSL 453
Query: 314 SSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSSSSEISSLSFPTKTLSSASSLQD 371
SSSA TTL IAASS S SS +SS T FG+T+T +SSS I SLS PTK+L++ASS Q
Sbjct: 454 SSSAATTLSIAASSVPSTTSSGAASSFTGFGVTSTAASSSAIVSLSLPTKSLTAASSSQA 505
BLAST of Sed0006153 vs. ExPASy TrEMBL
Match:
A0A1S3CAD4 (nuclear pore complex protein NUP62 OS=Cucumis melo OX=3656 GN=LOC103498773 PE=3 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 1.1e-60
Identity = 216/387 (55.81%), Postives = 250/387 (64.60%), Query Frame = 0
Query: 14 SSATGFPVL-FSSSSNTSSSSSAFSNQISNPALSGPFCFGSSSSSAPLFATTPFSGS--- 73
SS+TGF F +SS++++SS+ S+ S FG+ SS AP F P SGS
Sbjct: 120 SSSTGFNSFGFGASSSSANSSAPLFGAASSSGTSSASLFGAGSSPAPSFGAAPSSGSSVA 179
Query: 74 ------------SSAPLFEAAPSLGTSGLP-LFGGVSSTTTSSAPLFGTSASTGSPGSTF 133
SSAPLF AAPS G S P LFGG SS TTSSAPLFGT+AS S GS
Sbjct: 180 PSFGALSSSAGTSSAPLFGAAPSAGASSAPSLFGGASSATTSSAPLFGTAASAASSGSAL 239
Query: 134 LVASAFASGFSSPLFG--------TGLTLFGSHPLGTSFSGVLPSISTSNLFVSSSLSAS 193
ASA ASG + LFG TG LFGS P G S SG S+STSNLF SS +S
Sbjct: 240 FGASAPASGSGASLFGTSAPSSGSTGSGLFGSSPFGASSSGTSSSVSTSNLFASS--LSS 299
Query: 194 TTFQKSPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLT-----TTSSSITSASTS 253
+ FQ S SSSS +L+ SSPFA S SGF++ S+ SKTTS+T ++SSS+T ASTS
Sbjct: 300 SPFQSSLSSSSSQNLTSSSPFAAS-PSGFSFPTSTLSKTTSITNVPSSSSSSSLTLASTS 359
Query: 254 WSSFSFGTPGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFTSAAPLFSMVTST 313
SSFSFGTP S+S SSF F I+NAAS G S+A STT TK TSLS S APLFS VT+T
Sbjct: 360 SSSFSFGTPASSSSQSSFGFSINNAASTGGSSAPSTTATKPTSLSLSNSVAPLFSTVTTT 419
Query: 314 SASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSSLTSFGITNTTSS 371
SASTPA ++ TQ SFS PA S SSSA TTL IAASSA S ASS SS T FG+T++ SS
Sbjct: 420 SASTPAASSTTQPSFSVPAFSSSSSAATTLSIAASSAPSAASSGTVSSFTGFGVTSSASS 479
BLAST of Sed0006153 vs. ExPASy TrEMBL
Match:
A0A6J1DSI7 (nuclear pore complex protein NUP62 OS=Momordica charantia OX=3673 GN=LOC111023501 PE=3 SV=1)
HSP 1 Score: 224.2 bits (570), Expect = 9.4e-55
Identity = 198/339 (58.41%), Postives = 223/339 (65.78%), Query Frame = 0
Query: 44 ALSGPFCFGSSSSSAPLFATTPFSGSSSAPLFEAAPSLGTSGLPLFGGVSSTTTSSAPLF 103
AL+ GS +AP ++ +GSSS LF AAPS G S LFGGVSS T+SS PLF
Sbjct: 4 ALAAGSSSGSVFGAAPSGSSASSAGSSSFSLFGAAPSAGASAPSLFGGVSSATSSSTPLF 63
Query: 104 GTSASTGSPGSTFLVASAFASGFSSPLFGT-------GLTLFGSHPLGT-SFSGVLPSIS 163
G+SA T +PGS AS ASG LFGT G LFG+ PL T SF S
Sbjct: 64 GSSAPTATPGSALPGASVAASG---SLFGTASSSGSAGSALFGA-PLSTNSFGSNTFGTS 123
Query: 164 TSNLFVSSSLSAST-TFQKSPFSSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLTTTS 223
+S LF SS SAST +FQ S SSSS LS SSPFA S+SSGF++ +S SKTT+ T S
Sbjct: 124 SSGLFASSISSASTSSFQNSFSSSSSQSLSSSSPFAASSSSGFSFPTTSLSKTTNSVTAS 183
Query: 224 SS---ITSASTSWSSFSFGTPGLSASHSSFWFRISNAASMGESTALSTTCTKSTSLSFFT 283
SS +TSASTS SSFSFGTP SAS SSF F SNAAS S A TT TK TSLSF T
Sbjct: 184 SSSSPLTSASTSSSSFSFGTPASSASQSSFGFSFSNAASTAASAAPGTTATKPTSLSFST 243
Query: 284 SAAPLFSMVTSTSASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVASSSVSSS 343
S APLFS VT+TSASTP ++ TQ SFS PA SLSSSA TT+ AASS S ASS +SS
Sbjct: 244 SVAPLFSTVTTTSASTPVASSTTQPSFSVPAFSLSSSAATTISTAASSTPSAASSGAASS 303
Query: 344 LTSFGITNTTSSSSEISSLSFPTKTLSSASSLQDTASFG 371
T FG+TNT SSSS I SLS PTKTL++ASS Q ASFG
Sbjct: 304 FTGFGVTNTASSSSPIVSLSLPTKTLTAASSSQPPASFG 338
BLAST of Sed0006153 vs. TAIR 10
Match:
AT2G45000.1 (structural constituent of nuclear pore )
HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 142/401 (35.41%), Postives = 196/401 (48.88%), Query Frame = 0
Query: 8 SSTSPFSSATGFPVLFSSSSNTSSSSSAFSNQISNPAL--SGPFCFGSSSSSAPLFATTP 67
SS +P SS GF V S+SS + SSS F S+ A S PF +S S PLF ++P
Sbjct: 132 SSAAPGSSPFGF-VTSSASSTATPSSSLFGAPASSAATPSSSPFGAAPASGSTPLFGSSP 191
Query: 68 FSGSSSAPLFEAAPSLGTSGLPLFGGVSSTTTSSAPLFGTSASTGSPGSTFLVASAFASG 127
LF A S S LFG SS TS++PLFG +S +F VAS+ A G
Sbjct: 192 -------SLFSAPSSASASNSSLFGASSSAATSTSPLFGAPSSATGATPSFSVASS-APG 251
Query: 128 FSSPLFG-TGLTLFGSHPLGTSFSGVLPSI-----------------STSNLFVSSSLSA 187
SS +FG TG + S + +S SG PSI ST +LF SSS S
Sbjct: 252 SSSSIFGATGSS--PSFSVASSASGSSPSIFGATGSSPFFGSSSSAGSTPSLFASSS-SG 311
Query: 188 STTFQKSPF------SSSSLDLSWSSPFATSTSSGFAYSASSQSKTTSLTTTSSSITSAS 247
+TT SPF SSS+ + S +S S S+GF++ S+ S TTS TT S+ +AS
Sbjct: 312 ATTSSPSPFGVSTFNSSSTSNTSNASASPFSASTGFSFLKSTASSTTSSTTPSAPPQTAS 371
Query: 248 TSWSSFSFGTPGLSASHSSFWFRISNAASMGEST-----ALSTTCTKSTSLSFFTSAA-- 307
+S SSFSFGT +++S F ++A+ ST +++TT T S+S TSA
Sbjct: 372 SS-SSFSFGT----SANSGFNLSTGSSAAPASSTSGAVFSIATTTTTSSSTPAATSAPAS 431
Query: 308 ---------PLFSMVTSTSASTPAGNNRTQTSFSSPAISLSSSADTTLRIAASSASSVAS 367
P F + +S + +TPA + T FS+ L+SS T + + +V
Sbjct: 432 SAPASTMAFPSFGVTSSATNTTPASSAAT---FSTTGFGLASSTPATGSTNSFTGFAVPK 491
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038874708.1 | 1.3e-63 | 55.25 | nuclear pore complex protein NUP62 [Benincasa hispida] | [more] |
XP_023006514.1 | 1.6e-61 | 58.58 | nuclear pore complex protein NUP62 [Cucurbita maxima] | [more] |
XP_022959229.1 | 1.8e-60 | 58.90 | nuclear pore complex protein NUP62 isoform X2 [Cucurbita moschata] | [more] |
XP_022959228.1 | 1.8e-60 | 58.90 | nuclear pore complex protein NUP62 isoform X1 [Cucurbita moschata] | [more] |
XP_008459731.1 | 2.4e-60 | 55.81 | PREDICTED: nuclear pore complex protein NUP62 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
Q8L7F7 | 2.0e-06 | 35.41 | Nuclear pore complex protein NUP62 OS=Arabidopsis thaliana OX=3702 GN=NUP62 PE=1... | [more] |
Q75JC9 | 6.6e-05 | 33.53 | Uncharacterized protein DDB_G0271670 OS=Dictyostelium discoideum OX=44689 GN=DDB... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1L2D4 | 7.9e-62 | 58.58 | nuclear pore complex protein NUP62 OS=Cucurbita maxima OX=3661 GN=LOC111499220 P... | [more] |
A0A6J1H7F5 | 8.7e-61 | 58.90 | nuclear pore complex protein NUP62 isoform X2 OS=Cucurbita moschata OX=3662 GN=L... | [more] |
A0A6J1H5C8 | 8.7e-61 | 58.90 | nuclear pore complex protein NUP62 isoform X1 OS=Cucurbita moschata OX=3662 GN=L... | [more] |
A0A1S3CAD4 | 1.1e-60 | 55.81 | nuclear pore complex protein NUP62 OS=Cucumis melo OX=3656 GN=LOC103498773 PE=3 ... | [more] |
A0A6J1DSI7 | 9.4e-55 | 58.41 | nuclear pore complex protein NUP62 OS=Momordica charantia OX=3673 GN=LOC11102350... | [more] |
Match Name | E-value | Identity | Description | |
AT2G45000.1 | 1.4e-07 | 35.41 | structural constituent of nuclear pore | [more] |