Sed0006115 (gene) Chayote v1

Overview


Name	Sed0006115
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RETICULATA-RELATED 3, chloroplastic
Location	LG14: 5571396 .. 5573139 (+)
RNA-Seq Expression	Sed0006115
Synteny	Sed0006115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATATGTATATGTATATGTATGTATTCCTCTGTTCGAGAGTGGCGTTTTTAACCCGTTTCGGCCACCTACGCCACCCTCGATTCGATCTCCATTTTTGTCTGCGCAAATTCGCCACCTCTCTGTTTCTTCGTTGTTCTTCTCATTTCTTCTCTCTCTCTCAAGGTAATTCCAATTTCCCATTATTTGTTTTCAAGTATTCTATGTTGATCATGTGATCTCTGTTCTGTTTTGATCCATTTTTGCGCTCCAGATCTGGTCAATACTTGTTTAGTAGGGTTCTTTTTGTTTCTGATATATTTCTTGATTCTGTGTTTTTTGATTGATTTCTTTTCAGATTTGAGCAACTGGGTAGGTTTCTTTTAAGGGTTTTTGTTTTTGATCTGTTGAGTTATGGCGGCCATGGCTCAGCTGCATTATTGCTCCATTCGCCCTAGAAATTACTGCAATGTTGCTCCCAGTAATCGTGGTTGTAACAACGCTAGTGATTTCAGTTTTCTATCTAATTCGTCGGCTGTTGAATCGAGGGCTCGATCCATTTCTCTTTTTAATGTAACGAGGCCTAGTTTTTTGGTGAAATCTGAACTGATTGCTGGTGGTGGTGGAGGGGGAAATGGCGTTGGCCATGGCGGTGGCGGTGATGGTGGTGGTTCGAGCGATGACCGGGCTCGTGGGGATGATGGGTCATCGAGTTTTGGAGTGTTGGGGTTGTTTCTTCAAGGGTGGAGATTGAGAGTTGCTGCTGATCCACAGTTTCCTTTTAAGGTGTTGATGGAGGAACTTGTTGGTGTAAGTGCTTGTGTTCTTGGAGATATGGCATCTCGTCCGAATTTCGGTCTCAACGAGCTCGATTTCGTGTTCTCTACCCTTGTGGTTGGATCTATATTGAATTTTACTCTTATGTATCTCTTGGCTCCCACTGCATCTGCGGGTGCAGCTGCCAAACAGCTTCCTGCAATCTTTGCAAGCTGCCCCACGAGTCACATGTTCGAATCGGGTGCTTTTTCGATCTTAGATCGATTGGGAACCTTTGTTTACAAAGGAAGTGTATTCGCTGCGGTTGGACTGGCAGCTGGGCTCGTTGGGACAGCACTCTCGAATGGTTTGATGAAGCTGAGGAAGAAGATGGATCCCGAATTCGAAACACCGAATAAGCCACCTCCCACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTGAGCAGTAACTTGAGATACCAAACTTTGAATGGAGCCGAATTCGTGTTGGCCAAGGGGCTTCCCCCTTTGGCATTCAAGAGCTCAGTGGTGGTGTTGAGATGTTTGAACAACATTCTTGGGGGAATGTCGTTCGTCATCCTTGCGCGAATGACGGGAGCGCAGAGCGTCGAGGAATCGAAGCCTGCCGCAGTGGAGTTGGATTCTGCTGATGAGAAAGAGAAGCTCCTGAAAGAGGATTAAATTTAAGACTTGAAGTAATGACTTTCTGCATGAACTTGGTTTTGGTATGAATAGCTTATCATTTTGGCTTTGTTTCTCCATTGTTAGTATAAGCTTCATGATCCTGTGTATAAGGACCATTTTACTTTGCTTTGTAACAATAAGAAGCTCAAAATGTTGTGAAAGATTTCTGAACTTCTAAGGGATTATAATAGTTTTCATGGAATCTATTTAAAGCAGGAGGTGATGAGTTTAATCTATAGTAACCATCTATCAATTTCTTTGATATTAAAATGTTATATAGTCACCTGATATGTCA

mRNA sequence

TGTATATGTATATGTATATGTATGTATTCCTCTGTTCGAGAGTGGCGTTTTTAACCCGTTTCGGCCACCTACGCCACCCTCGATTCGATCTCCATTTTTGTCTGCGCAAATTCGCCACCTCTCTGTTTCTTCGTTGTTCTTCTCATTTCTTCTCTCTCTCTCAAGATTTGAGCAACTGGGTAGGTTTCTTTTAAGGGTTTTTGTTTTTGATCTGTTGAGTTATGGCGGCCATGGCTCAGCTGCATTATTGCTCCATTCGCCCTAGAAATTACTGCAATGTTGCTCCCAGTAATCGTGGTTGTAACAACGCTAGTGATTTCAGTTTTCTATCTAATTCGTCGGCTGTTGAATCGAGGGCTCGATCCATTTCTCTTTTTAATGTAACGAGGCCTAGTTTTTTGGTGAAATCTGAACTGATTGCTGGTGGTGGTGGAGGGGGAAATGGCGTTGGCCATGGCGGTGGCGGTGATGGTGGTGGTTCGAGCGATGACCGGGCTCGTGGGGATGATGGGTCATCGAGTTTTGGAGTGTTGGGGTTGTTTCTTCAAGGGTGGAGATTGAGAGTTGCTGCTGATCCACAGTTTCCTTTTAAGGTGTTGATGGAGGAACTTGTTGGTGTAAGTGCTTGTGTTCTTGGAGATATGGCATCTCGTCCGAATTTCGGTCTCAACGAGCTCGATTTCGTGTTCTCTACCCTTGTGGTTGGATCTATATTGAATTTTACTCTTATGTATCTCTTGGCTCCCACTGCATCTGCGGGTGCAGCTGCCAAACAGCTTCCTGCAATCTTTGCAAGCTGCCCCACGAGTCACATGTTCGAATCGGGTGCTTTTTCGATCTTAGATCGATTGGGAACCTTTGTTTACAAAGGAAGTGTATTCGCTGCGGTTGGACTGGCAGCTGGGCTCGTTGGGACAGCACTCTCGAATGGTTTGATGAAGCTGAGGAAGAAGATGGATCCCGAATTCGAAACACCGAATAAGCCACCTCCCACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTGAGCAGTAACTTGAGATACCAAACTTTGAATGGAGCCGAATTCGTGTTGGCCAAGGGGCTTCCCCCTTTGGCATTCAAGAGCTCAGTGGTGGTGTTGAGATGTTTGAACAACATTCTTGGGGGAATGTCGTTCGTCATCCTTGCGCGAATGACGGGAGCGCAGAGCGTCGAGGAATCGAAGCCTGCCGCAGTGGAGTTGGATTCTGCTGATGAGAAAGAGAAGCTCCTGAAAGAGGATTAAATTTAAGACTTGAAGTAATGACTTTCTGCATGAACTTGGTTTTGGTATGAATAGCTTATCATTTTGGCTTTGTTTCTCCATTGTTAGTATAAGCTTCATGATCCTGTGTATAAGGACCATTTTACTTTGCTTTGTAACAATAAGAAGCTCAAAATGTTGTGAAAGATTTCTGAACTTCTAAGGGATTATAATAGTTTTCATGGAATCTATTTAAAGCAGGAGGTGATGAGTTTAATCTATAGTAACCATCTATCAATTTCTTTGATATTAAAATGTTATATAGTCACCTGATATGTCA

Coding sequence (CDS)

ATGGCGGCCATGGCTCAGCTGCATTATTGCTCCATTCGCCCTAGAAATTACTGCAATGTTGCTCCCAGTAATCGTGGTTGTAACAACGCTAGTGATTTCAGTTTTCTATCTAATTCGTCGGCTGTTGAATCGAGGGCTCGATCCATTTCTCTTTTTAATGTAACGAGGCCTAGTTTTTTGGTGAAATCTGAACTGATTGCTGGTGGTGGTGGAGGGGGAAATGGCGTTGGCCATGGCGGTGGCGGTGATGGTGGTGGTTCGAGCGATGACCGGGCTCGTGGGGATGATGGGTCATCGAGTTTTGGAGTGTTGGGGTTGTTTCTTCAAGGGTGGAGATTGAGAGTTGCTGCTGATCCACAGTTTCCTTTTAAGGTGTTGATGGAGGAACTTGTTGGTGTAAGTGCTTGTGTTCTTGGAGATATGGCATCTCGTCCGAATTTCGGTCTCAACGAGCTCGATTTCGTGTTCTCTACCCTTGTGGTTGGATCTATATTGAATTTTACTCTTATGTATCTCTTGGCTCCCACTGCATCTGCGGGTGCAGCTGCCAAACAGCTTCCTGCAATCTTTGCAAGCTGCCCCACGAGTCACATGTTCGAATCGGGTGCTTTTTCGATCTTAGATCGATTGGGAACCTTTGTTTACAAAGGAAGTGTATTCGCTGCGGTTGGACTGGCAGCTGGGCTCGTTGGGACAGCACTCTCGAATGGTTTGATGAAGCTGAGGAAGAAGATGGATCCCGAATTCGAAACACCGAATAAGCCACCTCCCACATTGTTGAATGCCATGACTTGGGCTATTCACATGGGGGTGAGCAGTAACTTGAGATACCAAACTTTGAATGGAGCCGAATTCGTGTTGGCCAAGGGGCTTCCCCCTTTGGCATTCAAGAGCTCAGTGGTGGTGTTGAGATGTTTGAACAACATTCTTGGGGGAATGTCGTTCGTCATCCTTGCGCGAATGACGGGAGCGCAGAGCGTCGAGGAATCGAAGCCTGCCGCAGTGGAGTTGGATTCTGCTGATGAGAAAGAGAAGCTCCTGAAAGAGGATTAA

Protein sequence

MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFNVTRPSFLVKSELIAGGGGGGNGVGHGGGGDGGGSSDDRARGDDGSSSFGVLGLFLQGWRLRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPPLAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED

Homology

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BLAST of Sed0006115 vs. NCBI nr
Match: XP_022156248.1 (protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia])

HSP 1 Score: 549.3 bits (1414), Expect = 2.4e-152
Identity = 299/357 (83.75%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLF--NVTRPS 60
           MAAMAQLH CS+RPRNY NV P N   NN   FSFLS+SS ++SR RS+SLF  ++TRPS
Sbjct: 1   MAAMAQLH-CSLRPRNYYNV-PCNHAYNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPS 60

Query: 61  FLVKSEL-IAGGGGGGNGVGHGGGGDGGGS----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FL KSEL +AGGG GG+GVG GGGG GGG     SDDRA GDD SSSFGVLGLFL+GWR 
Sbjct: 61  FLAKSELSLAGGGDGGDGVGRGGGGGGGGDSGGWSDDRAHGDDDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTA+AG AAKQLPAIF+SCPTSHMFE GAF++LDRLGTFVYKG+VFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNA+TWAIHMGVSSNLRYQTLNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNN+LGG+SFVILAR TG+QS+E+ K AAVELDSADEKEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGD 355

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BLAST of Sed0006115 vs. NCBI nr
Match: XP_022966374.1 (protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 544.3 bits (1401), Expect = 7.8e-151
Identity = 299/357 (83.75%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFN--VTRPS 60
           MA+MAQLH CS+RPRNY NV PS+   NN   FSFLSNSSAVESR+RS+SLFN  +TR  
Sbjct: 1   MASMAQLH-CSVRPRNYYNV-PSSHAYNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS-----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FLVKSEL   GG GGNGVG GGGG GGG      SDDRA GDD SSSFGV GLFLQGWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADGDD-SSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTASAG AAKQLPAIF SCPTSHMFE GAF++L+RLGT VYKG+VFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNAMTWAIHMGVSSNLRYQ+LNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNNILGGMSFVILARMTG+QSVE++KPAA++LD+ D KEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGD 354

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BLAST of Sed0006115 vs. NCBI nr
Match: XP_038883563.1 (protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 541.6 bits (1394), Expect = 5.1e-150
Identity = 296/357 (82.91%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFN--VTRPS 60
           MAAMAQLH CS+RPR++ NV P+N   N+   FSFLSNSS VESR+RS+S FN  +TRPS
Sbjct: 1   MAAMAQLH-CSVRPRHHYNV-PNNPAYNSTPAFSFLSNSSVVESRSRSLSFFNADLTRPS 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS----SDDRARGDDG-SSSFGVLGLFLQGWRL 120
           FL KSEL   GG GGNGVGHGG G GGG     SDDR  GDD  SSSFGVLGLFL+GWR 
Sbjct: 61  FLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDNDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTA+AGAAAKQLPAIFASCPTSHMFE GAF++LDRLGTFVYKG+VFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGAAAKQLPAIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDP FETPNK PPTLLNAMTWAIHMGVSSNLRYQTLNG EF+LAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEFLLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNN+LGGMSFV+LAR+TG+QSVE  KPA +ELDS DEKEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKPAVMELDSGDEKEKLLEGD 355

[Close]

BLAST of Sed0006115 vs. NCBI nr
Match: XP_023517477.1 (protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023517478.1 protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 541.2 bits (1393), Expect = 6.6e-150
Identity = 298/357 (83.47%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFN--VTRPS 60
           MA+MAQLH CS+RPR+Y NV P +   N+   FSFLSNSSAVESR+RS+SLFN  +TR  
Sbjct: 1   MASMAQLH-CSVRPRDYYNV-PRSHAYNDPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS-----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FLVKSEL   GG GGNGVG GGGG GGG      SDDRA GDD SSSFGV GLFLQGWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDSGGWSDDRADGDD-SSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTASAG AAKQLPAIF SCPTSHMFE GAF++L+RLGT VYKG+VFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNAMTWAIHMGVSSNLRYQ+LNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNNILGGMSFVILARMTG+QSVEE+KPAA++LD+AD KEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEEAKPAALDLDAADTKEKLLEGD 354

[Close]

BLAST of Sed0006115 vs. NCBI nr
Match: KAG7027520.1 (Protein RETICULATA-RELATED 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.8 bits (1392), Expect = 8.6e-150
Identity = 298/357 (83.47%), Postives = 317/357 (88.80%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFN--VTRPS 60
           MA+MAQLH CS+RPR Y NV P +   N+   FSFLSNSSAVESR+RS+SLFN  +TR  
Sbjct: 1   MASMAQLH-CSVRPRGYYNV-PRSHAYNDPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS-----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FLVKSEL   GG GGNGVG GGGG GGG      SDDRA GDD SSSFGV GLFLQGWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDSGGWSDDRADGDD-SSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTASAG AAKQLPAIF SCPTSHMFE GAF++L+RLGT VYKG+VFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNAMTWAIHMGVSSNLRYQ+LNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNNILGGMSFVILARMTG+QSVEE+KPAA++LD+AD KEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEEAKPAALDLDAADTKEKLLEGD 354

[Close]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.5e-104
Identity = 195/267 (73.03%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 67  AGGGGGG----NGVGHGGGGDGGGSSDDRARGDDGSSSFGVLGLFLQGWRLRVAADPQFP 126
           AGGGGGG    NG G G GG GGG         + SS +G +GLF+QGWR RVAADPQFP
Sbjct: 60  AGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGWRSRVAADPQFP 119

Query: 127 FKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAA 186
           FKVLMEE+VG+SACVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY+LAPTA+   +
Sbjct: 120 FKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGS 179

Query: 187 AKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLR 246
           ++ LP IF +CP+SHMFE G+F++++R GT VYKG VFA+VGLAAGLVGTA+SNGL+ LR
Sbjct: 180 SQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLR 239

Query: 247 KKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPPLAFKSSVVV 306
           KKMDP FETPNKPPPT+LN++TWA HMGVS+N RYQTLNG EF+LAK LPPL FK+SV+V
Sbjct: 240 KKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIV 299

Query: 307 LRCLNNILGGMSFVILARMTGAQSVEE 330
           LRC NN+ GGMSFV+LARMTG+QSVEE
Sbjct: 300 LRCANNVAGGMSFVLLARMTGSQSVEE 326

[Close]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 3.7e-103
Identity = 204/294 (69.39%), Postives = 236/294 (80.27%), Query Frame = 0


Query: 53  NVTRPSFLVKSELIAGGGGGGNGVGHGGG-GDGGGSSDDRARGDDGSSSFGVLGLFLQGW 112
           N + P+ +V     AGGGGGG+   HGGG G GGG        ++ SS +G LGLF+QGW
Sbjct: 49  NFSSPNIMVP---CAGGGGGGSIGNHGGGSGSGGGGGGYGGSEEEESSPWGPLGLFIQGW 108

Query: 113 RLRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 172
           R RVAAD QFPFKVLME LVGVSA VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 109 RSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 168

Query: 173 LLAPTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVG 232
           LLAP+A +  ++  LP IF SCP+SHMFE G F++++R GT VYKG VFA VGLAAGLVG
Sbjct: 169 LLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLVG 228

Query: 233 TALSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGL 292
           TA+SNGL+ LRKK+DP FETPNKPPPTLLN++TWA HMGVS+N+RYQTLNGAEF+L K L
Sbjct: 229 TAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKSL 288

Query: 293 PPLAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEK 346
           PPL FK+SV+ LR +NN+LGGMSFV LARMTG+QSVEE K   +E+    EKEK
Sbjct: 289 PPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEK--KIEMSEISEKEK 337

[Close]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.9e-23
Identity = 103/318 (32.39%), Postives = 151/318 (47.48%), Query Frame = 0


Query: 69  GGGGGNGVGHGGGGDGGGS-----------------SDDRARGD---------------- 128
           G GGG G G+GG GDG G                   +  ARG                 
Sbjct: 120 GNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIR 179

Query: 129 --------DGSSSFGVLGLFLQGW---RLRVAADPQFPFKVLMEELVGVSACVLGDMASR 188
                   D  SS G+LG  ++ W   R R+ ADP F FK+  E ++      + ++  R
Sbjct: 180 KVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKR 239

Query: 189 PNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTASAGAAAKQLPAIFASCPTSH 248
                 E +   + L+VG+++N  L+ +LA       P+AS G   + + A + + P+S 
Sbjct: 240 GKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFA-YNALPSS- 299

Query: 249 MFESG----AFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKKMDPEFETPN 308
           +FE+      FS   RL T+ YKG ++ AVG   G+VG  ++N +M  ++ ++   E  N
Sbjct: 300 VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEE--N 359

Query: 309 KP-PPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVL-----AKGLPPLAFKSSVVVLRCLN 326
            P PP + +A  W + + VSSN RYQ +NG E V+     AK  PP A   +V V R  N
Sbjct: 360 IPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV-RLAN 419

[Close]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.7e-21
Identity = 105/325 (32.31%), Postives = 151/325 (46.46%), Query Frame = 0


Query: 68  GGGGGGNGVGHGGGGDG-GGSSDDRA-----------------------RGD-------D 127
           GGG GGNG G GGGGDG G   +D A                       RG        +
Sbjct: 112 GGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLE 171

Query: 128 GSSSFGVLGLF------LQG--W------------RLRVAADPQFPFKVLMEELVGVSAC 187
            + S G+  LF      LQG  W            R R+ ADP F FKV  E  +     
Sbjct: 172 AAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCA 231

Query: 188 VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAAA-------KQLPAI 247
              ++  R     +E +   + L+VG +++  L+ LLAP A  G  +       K L   
Sbjct: 232 TFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRA 291

Query: 248 FASCPTSHMFESG----AFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKKM 307
            AS P+S +FE+      FS+  R+ TF YKG ++ +VG   GL+G  ++N +M  ++ +
Sbjct: 292 CASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSV 351

Query: 308 DPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVL-----AKGLPPLAFKSSV 326
             + E     PP   +A  W + +G+SSN RYQ +NG E V+     AK +P +A   +V
Sbjct: 352 -KKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTV 411

[Close]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-18
Identity = 111/387 (28.68%), Postives = 163/387 (42.12%), Query Frame = 0


Query: 3   AMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVES--RARSISLFNVTRPSFL 62
           A+A   +C   P     ++ SN    + + F  LS+SS+      A+SIS FN   P   
Sbjct: 2   AIASCFFCVPTPNT--AISESNLTWPHIASFPRLSSSSSFNGVISAKSIS-FNRRVPITP 61

Query: 63  VKSELIAGGGGGGNGVG--HGGGGDGGGSSDDRARGDD---------------------- 122
           V S     GG   NG G   GGGG  GG +D    GD+                      
Sbjct: 62  VLSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELES 121

Query: 123 -----------GSSSFGVLGLFLQ--------------GWRLRVAADPQFPFKVLMEELV 182
                      G     V+  FL+              G+R R+ AD  F  K+ ME  V
Sbjct: 122 LPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGV 181

Query: 183 GVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAS----AGAAAKQLP 242
           G+      +   R     NEL+ VF+ + +  I +F L+YL APT S        A  + 
Sbjct: 182 GIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGIS 241

Query: 243 AIFASCPTSHM---FESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKK 302
             F +CP +         ++++L RLG     G+   AVG  + LVGTA++N  +K RK 
Sbjct: 242 KFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKA 301

Query: 303 MDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP------LAFKS 326
           +D   E   +  P +  ++ + ++M VSSNLRYQ + G   +  + L P      LA  +
Sbjct: 302 VDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLALSA 361

[Close]

BLAST of Sed0006115 vs. ExPASy TrEMBL
Match: A0A6J1DQ40 (protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023180 PE=3 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 1.2e-152
Identity = 299/357 (83.75%), Postives = 322/357 (90.20%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLF--NVTRPS 60
           MAAMAQLH CS+RPRNY NV P N   NN   FSFLS+SS ++SR RS+SLF  ++TRPS
Sbjct: 1   MAAMAQLH-CSLRPRNYYNV-PCNHAYNNTPAFSFLSDSSVIQSRTRSLSLFHTDLTRPS 60

Query: 61  FLVKSEL-IAGGGGGGNGVGHGGGGDGGGS----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FL KSEL +AGGG GG+GVG GGGG GGG     SDDRA GDD SSSFGVLGLFL+GWR 
Sbjct: 61  FLAKSELSLAGGGDGGDGVGRGGGGGGGGDSGGWSDDRAHGDDDSSSFGVLGLFLKGWRS 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTA+AG AAKQLPAIF+SCPTSHMFE GAF++LDRLGTFVYKG+VFAAVGLAAGLVGTA
Sbjct: 181 APTAAAGVAAKQLPAIFSSCPTSHMFEPGAFTVLDRLGTFVYKGTVFAAVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNA+TWAIHMGVSSNLRYQTLNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNALTWAIHMGVSSNLRYQTLNGVEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNN+LGG+SFVILAR TG+QS+E+ K AAVELDSADEKEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNVLGGVSFVILARATGSQSIEQPKAAAVELDSADEKEKLLEGD 355

[Close]

BLAST of Sed0006115 vs. ExPASy TrEMBL
Match: A0A6J1HTL4 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466041 PE=3 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 3.8e-151
Identity = 299/357 (83.75%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLFN--VTRPS 60
           MA+MAQLH CS+RPRNY NV PS+   NN   FSFLSNSSAVESR+RS+SLFN  +TR  
Sbjct: 1   MASMAQLH-CSVRPRNYYNV-PSSHAYNNPPAFSFLSNSSAVESRSRSLSLFNADLTRSR 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS-----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FLVKSEL   GG GGNGVG GGGG GGG      SDDRA GDD SSSFGV GLFLQGWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDNGGWSDDRADGDD-SSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTASAG AAKQLPAIF SCPTSHMFE GAF++L+RLGT VYKG+VFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNAMTWAIHMGVSSNLRYQ+LNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNNILGGMSFVILARMTG+QSVE++KPAA++LD+ D KEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEDAKPAALDLDATDTKEKLLEGD 354

[Close]

BLAST of Sed0006115 vs. ExPASy TrEMBL
Match: A0A6J1EBN9 (protein RETICULATA-RELATED 3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432542 PE=3 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.6e-149
Identity = 297/357 (83.19%), Postives = 317/357 (88.80%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRARSISLF--NVTRPS 60
           MA+MAQLH CS+RPR Y NV P +   N+   FSFLSNSSAVESR+RS+SLF  ++TR  
Sbjct: 1   MASMAQLH-CSVRPRGYYNV-PRSHAYNDPPAFSFLSNSSAVESRSRSLSLFIADLTRSR 60

Query: 61  FLVKSELIAGGGGGGNGVGHGGGGDGGGS-----SDDRARGDDGSSSFGVLGLFLQGWRL 120
           FLVKSEL   GG GGNGVG GGGG GGG      SDDRA GDD SSSFGV GLFLQGWR 
Sbjct: 61  FLVKSELSLAGGDGGNGVGRGGGGGGGGGDSGGWSDDRADGDD-SSSFGVFGLFLQGWRT 120

Query: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180
           RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL
Sbjct: 121 RVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLL 180

Query: 181 APTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTA 240
           APTASAG AAKQLPAIF SCPTSHMFE GAF++L+RLGT VYKG+VFA VGLAAGLVGTA
Sbjct: 181 APTASAGVAAKQLPAIFGSCPTSHMFEPGAFTVLERLGTLVYKGTVFATVGLAAGLVGTA 240

Query: 241 LSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP 300
           LSNGL+KLRKKMDPEFETPNK PPTLLNAMTWAIHMGVSSNLRYQ+LNG EFVLAKGLPP
Sbjct: 241 LSNGLIKLRKKMDPEFETPNKAPPTLLNAMTWAIHMGVSSNLRYQSLNGLEFVLAKGLPP 300

Query: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           LAFKSSVVVLRCLNNILGGMSFVILARMTG+QSVEE+KPAA++LD+AD KEKLL+ D
Sbjct: 301 LAFKSSVVVLRCLNNILGGMSFVILARMTGSQSVEEAKPAALDLDAADTKEKLLEGD 354

[Close]

BLAST of Sed0006115 vs. ExPASy TrEMBL
Match: A0A0A0L080 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1)

HSP 1 Score: 533.9 bits (1374), Expect = 5.1e-148
Identity = 295/359 (82.17%), Postives = 317/359 (88.30%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRAR--SISLFN--VTR 60
           MAAMAQLH CS+RPR Y +V P+N G NN   FSFLSNSSAVESR+R  S+SLFN  +TR
Sbjct: 1   MAAMAQLH-CSVRPRQYYSV-PNNHGFNNTPAFSFLSNSSAVESRSRSLSLSLFNADLTR 60

Query: 61  PSFLVKSELIAGGGGGGNGVGHGGGGDGGGS----SDDRARG-DDGSSSFGVLGLFLQGW 120
           PSFL KSEL   GG GGNGVGHGG G GGG     SDDR  G DD SSSFGVLGLFL+GW
Sbjct: 61  PSFLAKSELSLAGGDGGNGVGHGGRGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RLRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVG 240
           LLAPTA+AG AA++LP+IFASCPTSHMFE GAF++LDR+GTFVYKG+VFAAVGLAAGLVG
Sbjct: 181 LLAPTAAAGVAAQRLPSIFASCPTSHMFEPGAFTLLDRVGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TALSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGL 300
           TALSNGL+ LRKKMDP FETPNK PPTLLNAMTWAIHMGVSSNLRYQTLNG E+VLAKGL
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           PPLAFKSSVVVLRCLNN+LGGMSFV+LARMTG+QSVE  K A VELDS DEKEKLL+ D
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARMTGSQSVEGPKTAGVELDSGDEKEKLLEGD 357

[Close]

BLAST of Sed0006115 vs. ExPASy TrEMBL
Match: A0A1S3CIX7 (protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501484 PE=3 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 1.1e-147
Identity = 295/359 (82.17%), Postives = 315/359 (87.74%), Query Frame = 0


Query: 1   MAAMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVESRAR--SISLFN--VTR 60
           MAAMAQLH CS+RPR Y NV P+N G NN   FSFLSNSS VESR+R  S+SLFN  +TR
Sbjct: 1   MAAMAQLH-CSVRPRQYYNV-PNNHGFNNTPAFSFLSNSSVVESRSRSLSLSLFNADLTR 60

Query: 61  PSFLVKSELIAGGGGGGNGVGHGGGGDGGGS----SDDRARG-DDGSSSFGVLGLFLQGW 120
            S+L KSEL   GG GGNGVGHGG G GGG     SDDR  G DD SSSFGVLGLFL+GW
Sbjct: 61  RSYLAKSELSLAGGDGGNGVGHGGKGGGGGGDGGWSDDRTHGDDDDSSSFGVLGLFLKGW 120

Query: 121 RLRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180
           R RVAADPQFPFKVLMEELVGVS+CVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 121 RSRVAADPQFPFKVLMEELVGVSSCVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 180

Query: 181 LLAPTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVG 240
           LLAPTA+AGA AKQLP+IFASCPTSHMFE GAF++LDRLGTFVYKG+VFAAVGLAAGLVG
Sbjct: 181 LLAPTAAAGAVAKQLPSIFASCPTSHMFEPGAFTLLDRLGTFVYKGTVFAAVGLAAGLVG 240

Query: 241 TALSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGL 300
           TALSNGL+ LRKKMDP FETPNK PPTLLNAMTWAIHMGVSSNLRYQTLNG E+VLAKGL
Sbjct: 241 TALSNGLIMLRKKMDPGFETPNKAPPTLLNAMTWAIHMGVSSNLRYQTLNGVEYVLAKGL 300

Query: 301 PPLAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEKLLKED 351
           PPLAFKSSVVVLRCLNN+LGGMSFV+LAR+TG+QSVE  K A VELDS DEKEKLL+ D
Sbjct: 301 PPLAFKSSVVVLRCLNNVLGGMSFVVLARLTGSQSVEGPKTAGVELDSGDEKEKLLEGD 357

[Close]

BLAST of Sed0006115 vs. TAIR 10
Match: AT3G08640.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 380.9 bits (977), Expect = 1.1e-105
Identity = 195/267 (73.03%), Postives = 226/267 (84.64%), Query Frame = 0


Query: 67  AGGGGGG----NGVGHGGGGDGGGSSDDRARGDDGSSSFGVLGLFLQGWRLRVAADPQFP 126
           AGGGGGG    NG G G GG GGG         + SS +G +GLF+QGWR RVAADPQFP
Sbjct: 60  AGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSPWGPIGLFIQGWRSRVAADPQFP 119

Query: 127 FKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAA 186
           FKVLMEE+VG+SACVLGDMASRPNFGLNELDFVFSTLVVGSILNF LMY+LAPTA+   +
Sbjct: 120 FKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGS 179

Query: 187 AKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLR 246
           ++ LP IF +CP+SHMFE G+F++++R GT VYKG VFA+VGLAAGLVGTA+SNGL+ LR
Sbjct: 180 SQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLR 239

Query: 247 KKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPPLAFKSSVVV 306
           KKMDP FETPNKPPPT+LN++TWA HMGVS+N RYQTLNG EF+LAK LPPL FK+SV+V
Sbjct: 240 KKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKVLPPLVFKTSVIV 299

Query: 307 LRCLNNILGGMSFVILARMTGAQSVEE 330
           LRC NN+ GGMSFV+LARMTG+QSVEE
Sbjct: 300 LRCANNVAGGMSFVLLARMTGSQSVEE 326

[Close]

BLAST of Sed0006115 vs. TAIR 10
Match: AT3G08630.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 376.3 bits (965), Expect = 2.6e-104
Identity = 204/294 (69.39%), Postives = 236/294 (80.27%), Query Frame = 0


Query: 53  NVTRPSFLVKSELIAGGGGGGNGVGHGGG-GDGGGSSDDRARGDDGSSSFGVLGLFLQGW 112
           N + P+ +V     AGGGGGG+   HGGG G GGG        ++ SS +G LGLF+QGW
Sbjct: 49  NFSSPNIMVP---CAGGGGGGSIGNHGGGSGSGGGGGGYGGSEEEESSPWGPLGLFIQGW 108

Query: 113 RLRVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 172
           R RVAAD QFPFKVLME LVGVSA VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY
Sbjct: 109 RSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMY 168

Query: 173 LLAPTASAGAAAKQLPAIFASCPTSHMFESGAFSILDRLGTFVYKGSVFAAVGLAAGLVG 232
           LLAP+A +  ++  LP IF SCP+SHMFE G F++++R GT VYKG VFA VGLAAGLVG
Sbjct: 169 LLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLVG 228

Query: 233 TALSNGLMKLRKKMDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGL 292
           TA+SNGL+ LRKK+DP FETPNKPPPTLLN++TWA HMGVS+N+RYQTLNGAEF+L K L
Sbjct: 229 TAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKSL 288

Query: 293 PPLAFKSSVVVLRCLNNILGGMSFVILARMTGAQSVEESKPAAVELDSADEKEK 346
           PPL FK+SV+ LR +NN+LGGMSFV LARMTG+QSVEE K   +E+    EKEK
Sbjct: 289 PPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEK--KIEMSEISEKEK 337

[Close]

BLAST of Sed0006115 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-24
Identity = 103/318 (32.39%), Postives = 151/318 (47.48%), Query Frame = 0


Query: 69  GGGGGNGVGHGGGGDGGGS-----------------SDDRARGD---------------- 128
           G GGG G G+GG GDG G                   +  ARG                 
Sbjct: 120 GNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIR 179

Query: 129 --------DGSSSFGVLGLFLQGW---RLRVAADPQFPFKVLMEELVGVSACVLGDMASR 188
                   D  SS G+LG  ++ W   R R+ ADP F FK+  E ++      + ++  R
Sbjct: 180 KVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKR 239

Query: 189 PNFGLNELDFVFSTLVVGSILNFTLMYLLA-------PTASAGAAAKQLPAIFASCPTSH 248
                 E +   + L+VG+++N  L+ +LA       P+AS G   + + A + + P+S 
Sbjct: 240 GKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFA-YNALPSS- 299

Query: 249 MFESG----AFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKKMDPEFETPN 308
           +FE+      FS   RL T+ YKG ++ AVG   G+VG  ++N +M  ++ ++   E  N
Sbjct: 300 VFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEE--N 359

Query: 309 KP-PPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVL-----AKGLPPLAFKSSVVVLRCLN 326
            P PP + +A  W + + VSSN RYQ +NG E V+     AK  PP A   +V V R  N
Sbjct: 360 IPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGV-RLAN 419

[Close]

BLAST of Sed0006115 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-22
Identity = 105/325 (32.31%), Postives = 151/325 (46.46%), Query Frame = 0


Query: 68  GGGGGGNGVGHGGGGDG-GGSSDDRA-----------------------RGD-------D 127
           GGG GGNG G GGGGDG G   +D A                       RG        +
Sbjct: 112 GGGNGGNGDGGGGGGDGEGDDGEDEADKAEEKEFGPILKFEEVMKETERRGITLPEDMLE 171

Query: 128 GSSSFGVLGLF------LQG--W------------RLRVAADPQFPFKVLMEELVGVSAC 187
            + S G+  LF      LQG  W            R R+ ADP F FKV  E  +     
Sbjct: 172 AAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCA 231

Query: 188 VLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTASAGAAA-------KQLPAI 247
              ++  R     +E +   + L+VG +++  L+ LLAP A  G  +       K L   
Sbjct: 232 TFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRA 291

Query: 248 FASCPTSHMFESG----AFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKKM 307
            AS P+S +FE+      FS+  R+ TF YKG ++ +VG   GL+G  ++N +M  ++ +
Sbjct: 292 CASLPSS-VFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTAKRSV 351

Query: 308 DPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVL-----AKGLPPLAFKSSV 326
             + E     PP   +A  W + +G+SSN RYQ +NG E V+     AK +P +A   +V
Sbjct: 352 -KKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVVEGSTAAKRIPVVAMAFTV 411

[Close]

BLAST of Sed0006115 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-19
Identity = 111/387 (28.68%), Postives = 163/387 (42.12%), Query Frame = 0


Query: 3   AMAQLHYCSIRPRNYCNVAPSNRGCNNASDFSFLSNSSAVES--RARSISLFNVTRPSFL 62
           A+A   +C   P     ++ SN    + + F  LS+SS+      A+SIS FN   P   
Sbjct: 2   AIASCFFCVPTPNT--AISESNLTWPHIASFPRLSSSSSFNGVISAKSIS-FNRRVPITP 61

Query: 63  VKSELIAGGGGGGNGVG--HGGGGDGGGSSDDRARGDD---------------------- 122
           V S     GG   NG G   GGGG  GG +D    GD+                      
Sbjct: 62  VLSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNRNEAMLLLKESGIELES 121

Query: 123 -----------GSSSFGVLGLFLQ--------------GWRLRVAADPQFPFKVLMEELV 182
                      G     V+  FL+              G+R R+ AD  F  K+ ME  V
Sbjct: 122 LPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRERLLADDLFMAKLAMECGV 181

Query: 183 GVSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTAS----AGAAAKQLP 242
           G+      +   R     NEL+ VF+ + +  I +F L+YL APT S        A  + 
Sbjct: 182 GIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPPLALTAGGIS 241

Query: 243 AIFASCPTSHM---FESGAFSILDRLGTFVYKGSVFAAVGLAAGLVGTALSNGLMKLRKK 302
             F +CP +         ++++L RLG     G+   AVG  + LVGTA++N  +K RK 
Sbjct: 242 KFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKA 301

Query: 303 MDPEFETPNKPPPTLLNAMTWAIHMGVSSNLRYQTLNGAEFVLAKGLPP------LAFKS 326
           +D   E   +  P +  ++ + ++M VSSNLRYQ + G   +  + L P      LA  +
Sbjct: 302 VDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV--IEQRLLEPMLHQHKLALSA 361

The following BLAST results are available for this feature:

BLAST of Sed0006115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156248.1	2.4e-152	83.75	protein RETICULATA-RELATED 3, chloroplastic [Momordica charantia]	[more]
XP_022966374.1	7.8e-151	83.75	protein RETICULATA-RELATED 3, chloroplastic [Cucurbita maxima]	[more]
XP_038883563.1	5.1e-150	82.91	protein RETICULATA-RELATED 3, chloroplastic [Benincasa hispida]	[more]
XP_023517477.1	6.6e-150	83.47	protein RETICULATA-RELATED 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >X...	[more]
KAG7027520.1	8.6e-150	83.47	Protein RETICULATA-RELATED 3, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Sed0006115 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9Z2	1.5e-104	73.03	Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z3	3.7e-103	69.39	Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
B9DFK5	4.9e-23	32.39	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]
Q9FGP9	2.7e-21	32.31	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q94CJ5	2.8e-18	28.68	Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]

BLAST of Sed0006115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQ40	1.2e-152	83.75	protein RETICULATA-RELATED 3, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1HTL4	3.8e-151	83.75	protein RETICULATA-RELATED 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EBN9	1.6e-149	83.19	protein RETICULATA-RELATED 3, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0L080	5.1e-148	82.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337260 PE=3 SV=1	[more]
A0A1S3CIX7	1.1e-147	82.17	protein RETICULATA-RELATED 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501...	[more]

BLAST of Sed0006115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08640.1	1.1e-105	73.03	Protein of unknown function (DUF3411)	[more]
AT3G08630.1	2.6e-104	69.39	Protein of unknown function (DUF3411)	[more]
AT2G37860.3	3.5e-24	32.39	Protein of unknown function (DUF3411)	[more]
AT5G22790.1	1.9e-22	32.31	reticulata-related 1	[more]
AT5G12470.1	2.0e-19	28.68	Protein of unknown function (DUF3411)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 114..282 e-value: 1.9E-66 score: 223.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 329..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR31620:SF17	PROTEIN RETICULATA-RELATED 3, CHLOROPLASTIC-LIKE	coord: 1..339
None	No IPR available	PANTHER	PTHR31620	PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED	coord: 1..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006115.1	Sed0006115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane