Sed0006099 (gene) Chayote v1

Overview


Name	Sed0006099
Type	gene
Organism	Sechium edule (Chayote v1)
Description	late embryogenesis abundant protein 1-like
Location	LG09: 1639022 .. 1640942 (+)
RNA-Seq Expression	Sed0006099
Synteny	Sed0006099

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAACATGCAACAAAATTTCAATGCTGACCAAACCAAAGGCCTAACTCAGGTGAGCAAAACTCTCTAAATTATTTTTTTTCTTTTTACAACAAAAAATCATTATTATTTGTCAAATTTATATTGATGTATATTGTATGAATAGACTCAAACCCAAAGAGACCTTGATGGATGGTTTGTTTCATTATTTGGTTATAATTCAATAAAATGTAGACTTGAAAATAACCTAGTAAGATTATTCTTTCTCTTTTATTTTTTGAAAATCGAGAAATCGGAGCTTTGCTTCCCTATACCCGAGACACCACTGGGTCCTTCTGGAATACTTCGAGTATTCTAGTTTAAACACTTTTCAACGACCTCGAATTAGTGATCTCTAAAAAAAGTATGCCTTGAAGTTTTTAGCTTTAACCGCTAGGCTGCTCCTTGAATAACGATTTCGATTGTAATAATAATCTTTTAAAATTATTTTTTAAAATATAGTTTTGAATATTGATTTTTTGTGAGATTGGAATTATGAGACAGGCAAGAACAGAAGAATGGTTGGAGGTCACAAAAGAAACAAGTGATTCAGCTCAAACTCAACTTTGTGCTCCTTCATCTCATCTCCCACACAAACAACAACAACAACCAACTACATTTCTCCAACAGGTTCTCTTTTTTAATAAATAAATTAGATCTATCTCAAAAGTTAGAATAATAGGCTTATTATTAGCTAACAAAAGCAGCAACTTGGTTAAAAAGAAAAGAAAATAATATATATATATATATATATATGTATATATATATGTATATATATATATATGTATGTATATGTATATGTATGTATGTATATGTATATGTATGTATGTATATGTATGTATATATATATATGTAGGTATTTATAATATATGTATTTATACATTGATATTAATATGTATTTATAATATAGAGTTGTACTTCAACCGCGTTAGTAAATAGTTATAATTTAAAATTCTCCACCTCAATTGTTATATATATATATATATATATATATTTTGGAGATACTCACCTTCTAATAATTGTGCCATTAAAAGGGAAGAACTTTTCAACCTCCTTAAAAAAAAGAGCGTGAGTTAGAATCCATATTCTCTAATATATATATATAAACAAGATTTCAAATTTGCAAACATAAAATATAATAATACACCAAAAAGCTTAATTTTAATAACTTTTTAAAAATATTTCATATATTTCAAAATATGATTTCAACCAATTTCAGTTTGTTAAGCTATCTTTCCTTTTTTTTTTTTTTTATTCAGAAAAATCCCCTTTTTCTCCTACTTTTCCAATAAAAGTTGAGCTTTGTAATTAATGCGCATTTAACTTTTCCCATAATCTCAATGATTCTTTTAAGCTATTGTTAACATTTCAGAAGTTGTATATGGGGTCAAATTTTAAAATATTTATATTCATATTTATTAATATGTTTTAATATTGTATTATAAATATTTATTACTATAATATTAAATATAATATTATGTATTATTAATGCAGTGTTATTATTAATATTTATGATAATTATGGTTGTTAATTTAGTTTTAAAAGTGATTATATTTGTAACTATTTTTTAAATTTGACTAATCTTGTAAATTTTATTAATTAATTTTCAAAAGGGTCTTATAGAAAATTAATTTTCCTTTTTTTAAATGCAGCTATTCCGGACCCACTATAAAACTACTTATTTTGGGTAGAAAATTTATTTATTTTTTGGTAGAAAATTGAAAATAAATAAAAGAGTTAATCAAGTAGATTTCTTTTGCTTTCATTTATAATTTGAATTGTAATGTTTTATTTTGTTGCAGACTGGAGAAAAGGTGGCTCACATGGCTCAGGATGCAGTGGAAACAGTGAAGGAAACACTTGGAATGAGTGAATTTGGATATAAATTCATTTGGAATTAG

mRNA sequence

ATGTCTAACATGCAACAAAATTTCAATGCTGACCAAACCAAAGGCCTAACTCAGGCAAGAACAGAAGAATGGTTGGAGGTCACAAAAGAAACAAGTGATTCAGCTCAAACTCAACTTTGTGCTCCTTCATCTCATCTCCCACACAAACAACAACAACAACCAACTACATTTCTCCAACAGACTGGAGAAAAGGTGGCTCACATGGCTCAGGATGCAGTGGAAACAGTGAAGGAAACACTTGGAATGAGTGAATTTGGATATAAATTCATTTGGAATTAG

Coding sequence (CDS)

ATGTCTAACATGCAACAAAATTTCAATGCTGACCAAACCAAAGGCCTAACTCAGGCAAGAACAGAAGAATGGTTGGAGGTCACAAAAGAAACAAGTGATTCAGCTCAAACTCAACTTTGTGCTCCTTCATCTCATCTCCCACACAAACAACAACAACAACCAACTACATTTCTCCAACAGACTGGAGAAAAGGTGGCTCACATGGCTCAGGATGCAGTGGAAACAGTGAAGGAAACACTTGGAATGAGTGAATTTGGATATAAATTCATTTGGAATTAG

Protein sequence

MSNMQQNFNADQTKGLTQARTEEWLEVTKETSDSAQTQLCAPSSHLPHKQQQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSEFGYKFIWN

Homology

[Close]

BLAST of Sed0006099 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
          MSNMQQ+ NA QTKG TQARTEEW+E TK          +S+SAQ QLCA S+ H  H++
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
           Q+PT+FLQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGD 94

[Close]

BLAST of Sed0006099 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
           MSNMQQ+ NA QTKG TQARTEEW+E TK          +S+SAQ QLCA S+ H  H++
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
            Q+PT+FLQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGD 142

[Close]

BLAST of Sed0006099 vs. NCBI nr
Match: XP_023000573.1 (late embryogenesis abundant protein 1-like [Cucurbita maxima])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTKET---------SDSAQTQLCAPSSHLPHKQQ 60
          MS+MQQ+FNADQT+ L+QARTEEW+E T+ T         +DSAQ QL A      H  +
Sbjct: 1  MSSMQQSFNADQTQSLSQARTEEWMEATQSTGNEPRDILPTDSAQAQLSA------HHDK 60

Query: 61 QQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
          Q+PTTFLQQTGEK+ HMAQDAV+TVKETLGM +
Sbjct: 61 QEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGD 87

[Close]

BLAST of Sed0006099 vs. NCBI nr
Match: XP_022964507.1 (late embryogenesis abundant protein 1-like [Cucurbita moschata] >KAG7026133.1 hypothetical protein SDJN02_12632, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTKET---------SDSAQTQLCAPSSHLPHKQQ 60
          MS+MQQ+FN DQTK LTQARTEEW+E T+ T         +DSAQ QL A      H  +
Sbjct: 1  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSA------HHDK 60

Query: 61 QQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
          Q+P TFLQQTGEK+ HMAQDAV+TVKETLGM +
Sbjct: 61 QEPATFLQQTGEKMVHMAQDAVDTVKETLGMGD 87

[Close]

BLAST of Sed0006099 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
          MSNMQQ+ NA QTKG TQ RTEEW+E TK          +S+SAQ QLCA S+ H  H+ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
           Q+P + LQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGD 94

[Close]

BLAST of Sed0006099 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
          MSNMQQ+ NA QTKG TQARTEEW+E TK          +S+SAQ QLCA S+ H  H++
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
           Q+PT+FLQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGD 94

[Close]

BLAST of Sed0006099 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.0e-20
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
           MSNMQQ+ NA QTKG TQARTEEW+E TK          +S+SAQ QLCA S+ H  H++
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
            Q+PT+FLQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGD 142

[Close]

BLAST of Sed0006099 vs. ExPASy TrEMBL
Match: A0A6J1KN05 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494812 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTKET---------SDSAQTQLCAPSSHLPHKQQ 60
          MS+MQQ+FNADQT+ L+QARTEEW+E T+ T         +DSAQ QL A      H  +
Sbjct: 1  MSSMQQSFNADQTQSLSQARTEEWMEATQSTGNEPRDILPTDSAQAQLSA------HHDK 60

Query: 61 QQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
          Q+PTTFLQQTGEK+ HMAQDAV+TVKETLGM +
Sbjct: 61 QEPTTFLQQTGEKMVHMAQDAVDTVKETLGMGD 87

[Close]

BLAST of Sed0006099 vs. ExPASy TrEMBL
Match: A0A6J1HHZ6 (late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464511 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTKET---------SDSAQTQLCAPSSHLPHKQQ 60
          MS+MQQ+FN DQTK LTQARTEEW+E T+ T         +DSAQ QL A      H  +
Sbjct: 1  MSSMQQSFNDDQTKSLTQARTEEWMEATQSTGNEPRDILPTDSAQAQLSA------HHDK 60

Query: 61 QQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
          Q+P TFLQQTGEK+ HMAQDAV+TVKETLGM +
Sbjct: 61 QEPATFLQQTGEKMVHMAQDAVDTVKETLGMGD 87

[Close]

BLAST of Sed0006099 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.5e-18
Identity = 56/94 (59.57%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MSNMQQNFNADQTKGLTQARTEEWLEVTK---------ETSDSAQTQLCAPSS-HLPHKQ 60
          MSNMQQ+ NA QTKG TQ RTEEW+E TK          +S+SAQ QLCA S+ H  H+ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 QQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
           Q+P + LQQTGEK+ HMAQ AV+TVKETLGM +
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGD 94

[Close]

BLAST of Sed0006099 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 36/105 (34.29%), Postives = 49/105 (46.67%), Query Frame = 0


Query: 5   QQNFNADQTKGLTQARTEEWLEVTKETSDSAQTQLC---------------------APS 64
           QQ FNA Q +G  Q + E+W E  K+T+ SA  +                       A  
Sbjct: 3   QQQFNAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADG 62

Query: 65  SHLPHK----QQQQPTTFLQQTGEKVAHMAQDAVETVKETLGMSE 85
           SH  +K     Q+Q      QTGE V +MAQ A++ VK +LGM+E
Sbjct: 63  SHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNE 107

The following BLAST results are available for this feature:

BLAST of Sed0006099 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031971.1	1.9e-19	62.77	late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008460707.2	1.9e-19	62.77	PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]	[more]
XP_023000573.1	2.1e-18	61.29	late embryogenesis abundant protein 1-like [Cucurbita maxima]	[more]
XP_022964507.1	4.6e-18	61.29	late embryogenesis abundant protein 1-like [Cucurbita moschata] >KAG7026133.1 hy...	[more]
XP_011649123.1	1.7e-17	59.57	late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic...	[more]

BLAST of Sed0006099 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006099 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQZ2	9.0e-20	62.77	Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CCL5	9.0e-20	62.77	late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KN05	1.0e-18	61.29	late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HHZ6	2.2e-18	61.29	late embryogenesis abundant protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A0A0LI39	8.5e-18	59.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1	[more]

BLAST of Sed0006099 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13560.1	2.5e-06	34.29	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR34191:SF20	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..84
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006099.1	Sed0006099.1	mRNA