Sed0006089 (gene) Chayote v1

Overview


Name	Sed0006089
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG03: 13335027 .. 13335990 (-)
RNA-Seq Expression	Sed0006089
Synteny	Sed0006089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCATTCATTCCAATCAACTCAATTGTCATCTTCTTCACAAAAGCTTCAGAAAAACCAGAAGATTCAACAATGGAAGGAATCAAAGGCGCCGGCGGAAGAAAAGGCGGCGACAGATCCAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAGCGCACCGGCTCCGGCGCTCCGATCTACCTCGCCGCCGTGCTGGAATACCTCGCCGCTGAGGTGATTCATCAATCGATTCACAATTCATCTTCATCCGCAATCCTAGAATCAAGCGTTAAGATCTAATCAGATCTGGTTTCGATTTCTGAATCTTGTGTTGTGTTTCGTTGTTTGATGTAGGTTTTGGAATTGGCCGGAAATGCGGCGCGGGACAACAAGAAGAACAGGATAAACCCTAGGCATCTACTTCTGGCCGTGAGGAACGACGAGGAGCTTGGGAAGCTGCTTCAAGGAGTCACCATTGCGAGCGGCGGAGTTCTTCCGAACATCAATCCGGTTCTTCTGCCGAAGAAGACTGCGGCGAGTTCTGCTCCGACTGAAGAGAAGTCTAAGAAATCGCCGAAGAAGGCTTGAAATGAGTACAGGTTTCTGCGACTGAATTCTATACTTATTATGTAAAGAAACTTAGGAATCTCTGCTTGAATCCTTCATAGTTAGAGGAATCGCTGGCTTTGCGTTTAATGTAGTATCCGTTTCATATAATTTAATGGAAAATTAACGTTTCTTTTGTTCTTACTCATTTCTTCCGTTTGTGATCAATCAGTTTTACCTCATCGCCTAAAAATCTTGGATAAAGTATCGCAAATTCTTGTGACATTTGTATGCATGATTTTAATTCGTTTATTGTGATCCAAATATTTTAGAATTTTGTACTTTTTTTGGAACCGTACAATTTATCAAAAACTTGCGTAGATTATCT

mRNA sequence

CTCCCATTCATTCCAATCAACTCAATTGTCATCTTCTTCACAAAAGCTTCAGAAAAACCAGAAGATTCAACAATGGAAGGAATCAAAGGCGCCGGCGGAAGAAAAGGCGGCGACAGATCCAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAGCGCACCGGCTCCGGCGCTCCGATCTACCTCGCCGCCGTGCTGGAATACCTCGCCGCTGAGGTTTTGGAATTGGCCGGAAATGCGGCGCGGGACAACAAGAAGAACAGGATAAACCCTAGGCATCTACTTCTGGCCGTGAGGAACGACGAGGAGCTTGGGAAGCTGCTTCAAGGAGTCACCATTGCGAGCGGCGGAGTTCTTCCGAACATCAATCCGGTTCTTCTGCCGAAGAAGACTGCGGCGAGTTCTGCTCCGACTGAAGAGAAGTCTAAGAAATCGCCGAAGAAGGCTTGAAATGAGTACAGGTTTCTGCGACTGAATTCTATACTTATTATGTAAAGAAACTTAGGAATCTCTGCTTGAATCCTTCATAGTTAGAGGAATCGCTGGCTTTGCGTTTAATGTAGTATCCGTTTCATATAATTTAATGGAAAATTAACGTTTCTTTTGTTCTTACTCATTTCTTCCGTTTGTGATCAATCAGTTTTACCTCATCGCCTAAAAATCTTGGATAAAGTATCGCAAATTCTTGTGACATTTGTATGCATGATTTTAATTCGTTTATTGTGATCCAAATATTTTAGAATTTTGTACTTTTTTTGGAACCGTACAATTTATCAAAAACTTGCGTAGATTATCT

Coding sequence (CDS)

ATGGAAGGAATCAAAGGCGCCGGCGGAAGAAAAGGCGGCGACAGATCCAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGCCGCTACCTCAAGAAAGGCCGCTACGCCAAGCGCACCGGCTCCGGCGCTCCGATCTACCTCGCCGCCGTGCTGGAATACCTCGCCGCTGAGGTTTTGGAATTGGCCGGAAATGCGGCGCGGGACAACAAGAAGAACAGGATAAACCCTAGGCATCTACTTCTGGCCGTGAGGAACGACGAGGAGCTTGGGAAGCTGCTTCAAGGAGTCACCATTGCGAGCGGCGGAGTTCTTCCGAACATCAATCCGGTTCTTCTGCCGAAGAAGACTGCGGCGAGTTCTGCTCCGACTGAAGAGAAGTCTAAGAAATCGCCGAAGAAGGCTTGA

Protein sequence

MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTAASSAPTEEKSKKSPKKA

Homology

[Close]

BLAST of Sed0006089 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+K+SKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 8.0e-62
Identity = 129/141 (91.49%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYA+RT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 241.1 bits (614), Expect = 5.7e-60
Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAP-TEEKSKKSPKK 141
           KKT+++S P T EK+ KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of Sed0006089 vs. NCBI nr
Match: XP_022999035.1 (histone H2A.1-like [Cucurbita maxima])

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGG+RSK+SKSVKAGLQFPV RIGRYLKKGRYA+RTGSGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKK 141
           KK++++S    EK++KSPKK
Sbjct: 121 KKSSSNSTSPAEKAQKSPKK 140

[Close]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 119/139 (85.61%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 5   KGAGGRKGGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAA 64
           +GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R GSGAP+YLAAVLEYLAA
Sbjct: 12  RGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAA 71

Query: 65  EVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKKNRINPRHL LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK+
Sbjct: 72  EVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131

Query: 125 AASSAPTEEKS-KKSPKKA 142
            ASS+  E+ S  KSPKKA
Sbjct: 132 TASSSQAEKASATKSPKKA 150

[Close]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-53
Identity = 117/139 (84.17%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 5   KGAGGRKGGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAA 64
           KGAGGRKGG R K V+KS+KAGLQFPVGRIGRYLKKGRYA+R GSGAPIYLAAVLEYLAA
Sbjct: 8   KGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAA 67

Query: 65  EVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKK+RI PRH+LLAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK+
Sbjct: 68  EVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127

Query: 125 A-ASSAPTEEKSKKSPKKA 142
           A A     + K+ KSPKKA
Sbjct: 128 AVAEEKSPKAKAGKSPKKA 146

[Close]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot
Match: P25470 (Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-52
Identity = 112/142 (78.87%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 5   KGAGGRKGGD--RSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLA 64
           KGAGGRKGG   +  V++SV+AGLQFPVGR+GR+LKKGRYA+R G+GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI+PRHLLLAVRNDEELGKLL GVTIA GGVLPNINPVLLPK+
Sbjct: 69  AEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128

Query: 125 ---TAASSAPTEEKSKKSPKKA 142
               AAS+  +  K+KKSPKKA
Sbjct: 129 KENAAASTPKSPSKAKKSPKKA 150

[Close]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.0e-52
Identity = 112/140 (80.00%), Postives = 124/140 (88.57%), Query Frame = 0


Query: 5   KGAGGRKGGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAA 64
           KGAGGRKGG R K V++S +AGLQFPVGRIGRYLKKGRYA+R G+GAP+YLAAVLEYLAA
Sbjct: 9   KGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLL GVTIA GGVLPNINP+LLPKK 
Sbjct: 69  EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128

Query: 125 --AASSAPTEEKSKKSPKKA 142
             AA++  +  K+ KSPKKA
Sbjct: 129 EKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot
Match: P40281 (Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.5e-52
Identity = 113/141 (80.14%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 5   KGAGGRKGGDRSK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLA 64
           KGAGGRKGG   K  V++SV+AGLQFPVGRIGR+LKKGRYA+R G+GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKAVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI+PRHLLLAVRND ELGKLL GVTIA GGVLPNINPVLLPK+
Sbjct: 69  AEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKR 128

Query: 125 T--AASSAPTEEKSKKSPKKA 142
           T  AAS+  +  K+KK+PKKA
Sbjct: 129 TESAASAPKSPSKAKKTPKKA 149

[Close]

BLAST of Sed0006089 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 129/141 (91.49%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYA+RT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKKA 142
           KKTA++S PT EK++KSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Sed0006089 vs. ExPASy TrEMBL
Match: A0A6J1DB39 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGGDR+KVSKSVKAGLQFPVGRIGRYLKKGRYAKRT +GAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTAASSAP-TEEKSKKSPKK 141
           KKT+++S P T EK+ KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of Sed0006089 vs. ExPASy TrEMBL
Match: A0A6J1KE66 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.9e-59
Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MEGIKGAGGRKGGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEY 60
           MEG KGAGGRKGG+RSK+SKSVKAGLQFPV RIGRYLKKGRYA+RTGSGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSVKAGLQFPVARIGRYLKKGRYAQRTGSGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTAASSAPTEEKSKKSPKK 141
           KK++++S    EK++KSPKK
Sbjct: 121 KKSSSNSTSPAEKAQKSPKK 140

[Close]

BLAST of Sed0006089 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 119/139 (85.61%), Postives = 126/139 (90.65%), Query Frame = 0


Query: 5   KGAGGRKGGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAA 64
           +GAGGRKGGDR K VSKSVKAGLQFPVGRI RYLKKGRYA R GSGAP+YLAAVLEYLAA
Sbjct: 12  RGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAA 71

Query: 65  EVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKKNRINPRHL LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK+
Sbjct: 72  EVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131

Query: 125 AASSAPTEEKS-KKSPKKA 142
            ASS+  E+ S  KSPKKA
Sbjct: 132 TASSSQAEKASATKSPKKA 150

[Close]

BLAST of Sed0006089 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-50
Identity = 108/140 (77.14%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 5   KGAGGRK--GGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYL 64
           KGA GR+  GG + K VS+SVK+GLQFPVGRIGRYLKKGRY+KR G+GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 124
           AAEVLELAGNAARDNKKNRI PRH+LLAVRNDEELG LL+GVTIA GGVLPNINP+LLPK
Sbjct: 69  AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPK 128

Query: 125 KTAASSAPTEEKSKKSPKKA 142
           K+  +++ T  K+ KSP KA
Sbjct: 129 KSEKAASTT--KTPKSPSKA 146

[Close]

BLAST of Sed0006089 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-48
Identity = 107/140 (76.43%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 5   KGAGGRK--GGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYL 64
           K  GGRK  G  ++K VSKS+KAGLQFPVGRI R+LKKGRYA+R G GAP+Y+AAVLEYL
Sbjct: 9   KAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYL 68

Query: 65  AAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPK 124
           AAEVLELAGNAARDNKK+RI PRHLLLA+RNDEELGKLL GVTIA GGVLPNIN VLLPK
Sbjct: 69  AAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPK 128

Query: 125 KTAASSAPTEEKSKKSPKKA 142
           K+A  + P EEK+ KSP K+
Sbjct: 129 KSA--TKPAEEKATKSPVKS 146

[Close]

BLAST of Sed0006089 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-46
Identity = 108/164 (65.85%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 5   KGAGGRK--GGDRSK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYL 64
           KGA GR+  GG + K VS+SVK+GLQFPVGRIGRYLKKGRY+KR G+GAP+YLAAVLEYL
Sbjct: 9   KGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYL 68

Query: 65  AAE------------------------VLELAGNAARDNKKNRINPRHLLLAVRNDEELG 124
           AAE                        VLELAGNAARDNKKNRI PRH+LLAVRNDEELG
Sbjct: 69  AAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG 128

Query: 125 KLLQGVTIASGGVLPNINPVLLPKKTAASSAPTEEKSKKSPKKA 142
            LL+GVTIA GGVLPNINP+LLPKK+  +++ T  K+ KSP KA
Sbjct: 129 TLLKGVTIAHGGVLPNINPILLPKKSEKAASTT--KTPKSPSKA 170

[Close]

BLAST of Sed0006089 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 12  GGDRSKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTGSGAPIYLAAVLEYLAAEVLELAGN 71
           G  +   S+S KAGLQFPVGRI R+LK G+YA+R G+GAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTAASSAPTE 131
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK A SS PTE
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK-AGSSKPTE 130

Query: 132 E 133
           E
Sbjct: 131 E 130

The following BLAST results are available for this feature:

BLAST of Sed0006089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890710.1	1.6e-62	92.20	probable histone H2A.5 [Benincasa hispida]	[more]
XP_008454292.1	2.7e-62	92.20	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_004144786.1	8.0e-62	91.49	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_022150784.1	5.7e-60	90.78	probable histone H2A.5 [Momordica charantia]	[more]
XP_022999035.1	1.8e-58	87.86	histone H2A.1-like [Cucurbita maxima]	[more]

BLAST of Sed0006089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F49	1.5e-55	85.61	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
P25469	1.1e-53	84.17	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P25470	1.6e-52	78.87	Histone H2A.1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q2HU68	2.0e-52	80.00	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
P40281	3.5e-52	80.14	Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Sed0006089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYC1	1.3e-62	92.20	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	1.3e-62	92.20	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
A0A0A0LLV9	3.9e-62	91.49	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A6J1DB39	2.8e-60	90.78	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1	[more]
A0A6J1KE66	8.9e-59	87.86	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111493546 PE=3 SV=1	[more]

BLAST of Sed0006089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	1.1e-56	85.61	histone H2A 7	[more]
AT5G02560.1	3.3e-50	77.14	histone H2A 12	[more]
AT5G59870.1	1.8e-48	76.43	histone H2A 6	[more]
AT5G02560.2	3.8e-46	65.85	histone H2A 12	[more]
AT4G27230.1	1.2e-42	74.38	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 16..38 score: 62.32 coord: 60..73 score: 89.46 coord: 102..120 score: 76.19 coord: 74..88 score: 74.67 coord: 45..60 score: 76.07
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 4.4E-75 score: 265.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 7..122 e-value: 5.49058E-65 score: 191.78
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 4.9E-19 score: 67.8
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..91 e-value: 5.6E-12 score: 46.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 3..133 e-value: 2.4E-60 score: 204.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141
None	No IPR available	PANTHER	PTHR23430:SF238	HISTONE H2A	coord: 4..131
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..131
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006089.1	Sed0006089.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity