Sed0006079 (gene) Chayote v1

Overview
NameSed0006079
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG12: 33382776 .. 33383108 (+)
RNA-Seq ExpressionSed0006079
SyntenySed0006079
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAAAGTCATTGAACGTACTCGAAATGAAGTTAACATTTGTATTCCTAATAGCGATTTTAACATCCTCAGCAACTGCTCGTATGGTGGTCGAGGCGGCATCGCCTAATCCAATGGAAACGAAGGATTTCTCATTGTTTCCGTGCATATCATTCGTTCCCGAGGCAACGAAATGCGTTATCGATGTGTTAAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTTAAGTTGCAAGATTGTTCTTCTGAATTTCTCAAAGACATTTCTTCGAGTGAAATGATTTTGATTAAAAGTGTATGTGCTTTTTCTTTAGGTTAA

mRNA sequence

ATGGCGGCAAAGTCATTGAACGTACTCGAAATGAAGTTAACATTTGTATTCCTAATAGCGATTTTAACATCCTCAGCAACTGCTCGTATGGTGGTCGAGGCGGCATCGCCTAATCCAATGGAAACGAAGGATTTCTCATTGTTTCCGTGCATATCATTCGTTCCCGAGGCAACGAAATGCGTTATCGATGTGTTAAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTTAAGTTGCAAGATTGTTCTTCTGAATTTCTCAAAGACATTTCTTCGAGTGAAATGATTTTGATTAAAAGTGTATGTGCTTTTTCTTTAGGTTAA

Coding sequence (CDS)

ATGGCGGCAAAGTCATTGAACGTACTCGAAATGAAGTTAACATTTGTATTCCTAATAGCGATTTTAACATCCTCAGCAACTGCTCGTATGGTGGTCGAGGCGGCATCGCCTAATCCAATGGAAACGAAGGATTTCTCATTGTTTCCGTGCATATCATTCGTTCCCGAGGCAACGAAATGCGTTATCGATGTGTTAAAGAATGCAGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTTTAAGTTGCAAGATTGTTCTTCTGAATTTCTCAAAGACATTTCTTCGAGTGAAATGATTTTGATTAAAAGTGTATGTGCTTTTTCTTTAGGTTAA

Protein sequence

MAAKSLNVLEMKLTFVFLIAILTSSATARMVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLKNAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCAFSLG
Homology
[Close]
BLAST of Sed0006079 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATAR-MVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L  +  IAIL SS TAR  +V AA+P    ++DFSLFPCISFVP+ATKCVIDVLK
Sbjct: 6   ITKLPLVLLVCIAILASSVTARPTIVAAATPT---SEDFSLFPCISFVPKATKCVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           NAVAPHPSCC+AI +L DCSS+FLKDI SS+MIL+KS+CA
Sbjct: 66  NAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-24
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATAR-MVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L  +  IAIL SS TAR  +V AA+P    +KDFSLFPCISFVP ATK VIDVLK
Sbjct: 6   ITKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           NAVAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 66  NAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-24
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATA-RMVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L     IAIL SS TA   +V AA+P    ++DFSLFPCISFVP+ATKCVIDVLK
Sbjct: 6   ITKLPLVLRVCIAILASSVTACPTIVAAATPT---SEDFSLFPCISFVPKATKCVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           N VAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 66  NVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. NCBI nr
Match: KAE8653017.1 (hypothetical protein Csa_004564 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 65/101 (64.36%), Postives = 76/101 (75.25%), Query Frame = 0 

Query: 10  EMKLTFVFL-IAILTSSATAR--MVVEAASPNPMETKD-FSLFPCISFVPEATKCVIDVL 69
           ++ L  + L IAIL SS  AR  MV  AA   P+ T++ FSLFPCIS VP+ATKCVIDVL
Sbjct: 7   KLPLVLILLCIAILASSVAARPPMVGAAAPSKPLGTEEYFSLFPCISLVPQATKCVIDVL 66

Query: 70  KNAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
            N VAPHPSCC+AI KL DCSS FLKDI + +MIL+KSVCA
Sbjct: 67  NNTVAPHPSCCEAISKLNDCSSNFLKDIPTGKMILVKSVCA 107

[Close]
BLAST of Sed0006079 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-22
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 10  EMKLTFVFLIAILTSSATARMV-VEAASPNPMETKDFSLFPCISFVPEATKCVIDVLKNA 69
           ++ L  +F I IL SS  AR V V AA+P      D SLFPC SFVP+AT+CVIDVLKNA
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAPE----GDISLFPCKSFVPKATECVIDVLKNA 66

Query: 70  VAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           VAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 67  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICA 100

[Close]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATAR-MVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L  +  IAIL SS TAR  +V AA+P    ++DFSLFPCISFVP+ATKCVIDVLK
Sbjct: 6   ITKLPLVLLVCIAILASSVTARPTIVAAATPT---SEDFSLFPCISFVPKATKCVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           NAVAPHPSCC+AI +L DCSS+FLKDI SS+MIL+KS+CA
Sbjct: 66  NAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATAR-MVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L  +  IAIL SS TAR  +V AA+P    +KDFSLFPCISFVP ATK VIDVLK
Sbjct: 6   ITKLPLILLVCIAILASSVTARPTIVAAATP---ISKDFSLFPCISFVPMATKRVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           NAVAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 66  NAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.2e-24
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 8   VLEMKLTFVFLIAILTSSATA-RMVVEAASPNPMETKDFSLFPCISFVPEATKCVIDVLK 67
           + ++ L     IAIL SS TA   +V AA+P    ++DFSLFPCISFVP+ATKCVIDVLK
Sbjct: 6   ITKLPLVLRVCIAILASSVTACPTIVAAATPT---SEDFSLFPCISFVPKATKCVIDVLK 65

Query: 68  NAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           N VAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 66  NVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICA 102

[Close]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 63/98 (64.29%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 10  EMKLTFVFLIAILTSSATARMV-VEAASPNPMETKDFSLFPCISFVPEATKCVIDVLKNA 69
           ++ L  +F I IL SS  AR V V AA+P      D SLFPC SFVP+AT+CVIDVLKNA
Sbjct: 7   KLPLALLFCIFILASSVMARPVTVAAAAPE----GDISLFPCKSFVPKATECVIDVLKNA 66

Query: 70  VAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVCA 107
           VAPHPSCC+AI +L DCSS+FLKDI S +MIL+KS+CA
Sbjct: 67  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICA 100

[Close]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match: A0A5A7U904 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00650 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 63/108 (58.33%), Postives = 74/108 (68.52%), Query Frame = 0 

Query: 1   MAAKSLNVLEMKLTFVFL--IAILTSSATA-RMVVEAASPNPMETKDFSLFPCISFVPEA 60
           MAAKSL    MKL  +FL   AI T  A A +  V    P+P  T+D S FPC SFVPEA
Sbjct: 1   MAAKSLKTSTMKLILIFLCCTAIFTLPAEAMKAAVAPTQPDPFLTEDISFFPCFSFVPEA 60

Query: 61  TKCVIDVLKNAVAPHPSCCKAIFKLQDCSSEFLKDISSSEMILIKSVC 106
           TKC+IDV K+ +APHP+CCKAI KL+ CSS F   I S++MILIKSVC
Sbjct: 61  TKCMIDVFKHPIAPHPTCCKAISKLKSCSSSFFNGIPSADMILIKSVC 108

The following BLAST results are available for this feature:
BLAST of Sed0006079 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10345.15.5e-2667.00hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa][more]
KAA0050063.18.8e-2466.00hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa][more]
KAA0050079.18.8e-2464.00hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa][more]
KAE8653017.11.7e-2264.36hypothetical protein Csa_004564 [Cucumis sativus][more]
KAA0050065.12.8e-2264.29hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa][more]
BLAST of Sed0006079 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFS62.7e-2667.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2D84.2e-2466.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9B04.2e-2464.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U8Y31.4e-2264.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9041.8e-2258.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Sed0006079 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0006079.1Sed0006079.1mRNA