Sed0006067 (gene) Chayote v1

Overview


Name	Sed0006067
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L27
Location	LG11: 35886266 .. 35887223 (-)
RNA-Seq Expression	Sed0006067
Synteny	Sed0006067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTACAGCCATGAGTTTTAACCTTGTTGGTGCTTTCAAAGGCCTCTCTCTGGCCCGTAGCTCTTCTTCCACTTTCTTCAATGGCGATTTCGGCACCATTCAAGCCCCTCCCAAGCTCTCTGTCTCATTTCCCAACAGATTTCCTCTAACCATTCAAAATGCTCACAAGAAAGGGGCTGGAAGCACCAAGAATGGCCGGGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAACTCGCCAAGCCCGGTTCCATTATCGTTCGTCAGCGCGGAACCAAGGTAGTTTCGAAATCCACTTCAATTTTCAAAATTACATTGACTTGAAGTTGGTACTCTGAATTAGGTTAGGTCTTAAATACGAACATACATTGAATTTTTGTAATTGGGGTTTATGGTTTCTGTTCATGTACCAATTGTTTCAGTTCCATGCTGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCGTTGATTGATGGGCTTGTTAAATTCGAAAAGTCTGGACCTGACAAGAAGAAGGTTTCGATTCTAATCTCATCCTTTAAATATGTAGTTATTTAGTTGCATTGCAGTCCCCTTGTTGGTAGAGGCTTGGGTACCTCCTAGTTGAGGTCCAAGGTTCGAAACCTACCCATGAACTTAATTGTAAAATCCCTCGGTACTCTGTTATGTGGGACGAAGTTCCGATTCCCGGTTATAAAAAATGGAAAAAGAAAGTGACATTGCAAGAGACAAACTGAGATATATTTATTTCATTTCAGGTGAGTGTCTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTACAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATGATTGCTCAACCCCAATTACTATTAGCTTCCACTGATGATACAGAAACCAATCCAGTTTGCTGA

mRNA sequence

ATGGCTGTTACAGCCATGAGTTTTAACCTTGTTGGTGCTTTCAAAGGCCTCTCTCTGGCCCGTAGCTCTTCTTCCACTTTCTTCAATGGCGATTTCGGCACCATTCAAGCCCCTCCCAAGCTCTCTGTCTCATTTCCCAACAGATTTCCTCTAACCATTCAAAATGCTCACAAGAAAGGGGCTGGAAGCACCAAGAATGGCCGGGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAACTCGCCAAGCCCGGTTCCATTATCGTTCGTCAGCGCGGAACCAAGTTCCATGCTGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCGTTGATTGATGGGCTTGTTAAATTCGAAAAGTCTGGACCTGACAAGAAGAAGGTGAGTGTCTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTACAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATGATTGCTCAACCCCAATTACTATTAGCTTCCACTGATGATACAGAAACCAATCCAGTTTGCTGA

Coding sequence (CDS)

ATGGCTGTTACAGCCATGAGTTTTAACCTTGTTGGTGCTTTCAAAGGCCTCTCTCTGGCCCGTAGCTCTTCTTCCACTTTCTTCAATGGCGATTTCGGCACCATTCAAGCCCCTCCCAAGCTCTCTGTCTCATTTCCCAACAGATTTCCTCTAACCATTCAAAATGCTCACAAGAAAGGGGCTGGAAGCACCAAGAATGGCCGGGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTCGGCGATCAACTCGCCAAGCCCGGTTCCATTATCGTTCGTCAGCGCGGAACCAAGTTCCATGCTGGGAAGAATGTGGGGCTTGGCAAGGACCATACCATTTTCTCGTTGATTGATGGGCTTGTTAAATTCGAAAAGTCTGGACCTGACAAGAAGAAGGTGAGTGTCTATCCAAGAGAAGTGCAGCCTGAGAATCCAAACAGCTACAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAAGAAGGCATGATTGCTCAACCCCAATTACTATTAGCTTCCACTGATGATACAGAAACCAATCCAGTTTGCTGA

Protein sequence

MAVTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTETNPVC

Homology

[Close]

BLAST of Sed0006067 vs. NCBI nr
Match: KAG7015950.1 (50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.0 bits (876), Expect = 3.2e-90
Identity = 172/188 (91.49%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 3   VTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAG 62
           V AMS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFPNRFPLTI+NAHKKGAG
Sbjct: 17  VAAMSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAG 76

Query: 63  STKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVK 122
           STKNGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVK
Sbjct: 77  STKNGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVK 136

Query: 123 FEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTD 182
           FEK GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD
Sbjct: 137 FEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTD 196

Query: 183 DTETNPVC 191
            TETNPVC
Sbjct: 197 ATETNPVC 204

[Close]

BLAST of Sed0006067 vs. NCBI nr
Match: XP_023550670.1 (50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550671.1 50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6578368.1 50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 2.1e-89
Identity = 170/185 (91.89%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 6   MSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTK 65
           MS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFPNRFPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 SGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTE 185
            GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD TE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 186 TNPVC 191
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Sed0006067 vs. NCBI nr
Match: XP_022993762.1 (50S ribosomal protein L27, chloroplastic [Cucurbita maxima] >XP_022993763.1 50S ribosomal protein L27, chloroplastic [Cucurbita maxima])

HSP 1 Score: 338.2 bits (866), Expect = 4.6e-89
Identity = 169/185 (91.35%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 6   MSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTK 65
           MS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFPNRFPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 SGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTE 185
            GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG I+QPQL+LASTD TE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSISQPQLVLASTDATE 180

Query: 186 TNPVC 191
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Sed0006067 vs. NCBI nr
Match: XP_022133707.1 (50S ribosomal protein L27, chloroplastic [Momordica charantia])

HSP 1 Score: 337.4 bits (864), Expect = 7.9e-89
Identity = 170/190 (89.47%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MAVTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKG 60
           M V AMS NLVGAF+GLSL  SSSS+FF GDF ++Q PPK S+SFPNRFPLTI+NAHKKG
Sbjct: 1   MPVAAMSLNLVGAFRGLSLVSSSSSSFFRGDFASVQPPPKFSLSFPNRFPLTIENAHKKG 60

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL
Sbjct: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120

Query: 121 VKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLAS 180
           VKFEK GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LAS
Sbjct: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSIAQPQLVLAS 180

Query: 181 TDDTETNPVC 191
           +D TETNPVC
Sbjct: 181 SDATETNPVC 190

[Close]

BLAST of Sed0006067 vs. NCBI nr
Match: XP_022939083.1 (50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939084.1 50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939085.1 50S ribosomal protein L27, chloroplastic [Cucurbita moschata])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 169/185 (91.35%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 6   MSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTK 65
           MS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFP RFPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLAPSSSSSFFKGDFGSIQLPPKLSVSFPTRFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 SGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTE 185
            GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD TE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 186 TNPVC 191
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot
Match: P82190 (50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 PE=1 SV=2)

HSP 1 Score: 273.1 bits (697), Expect = 2.4e-72
Identity = 143/195 (73.33%), Postives = 171/195 (87.69%), Query Frame = 0


Query: 1   MAV-TAMSFNLVGAFKGLSLARSSSSTFFNGDFG--TIQAPPKLSVSFPNRFPLTIQNAH 60
           MAV T+MSFNL+ +F+G+SL+ SSSS+FF G+FG  +++ P K  +S  + FPLTI++AH
Sbjct: 1   MAVTTSMSFNLMASFRGMSLSSSSSSSFFKGEFGPSSLRLPNKSPLSV-SPFPLTIESAH 60

Query: 61  KKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLI 120
           KKGAGSTKNGRDSKGQRLGVKI+GDQ+AKPG+II+RQRGTKFH GKNVG+GKDHTIF+LI
Sbjct: 61  KKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTIFALI 120

Query: 121 DGLVKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLL 180
           DGLVKFEK GPDKKKVSVYPRE+QPENPNSYRARKRE FRLQRE+KKAR+EG   QPQL+
Sbjct: 121 DGLVKFEKYGPDKKKVSVYPREIQPENPNSYRARKRENFRLQREKKKARREGYSFQPQLI 180

Query: 181 LAS--TDDTETNPVC 191
           LAS  TD+ + + VC
Sbjct: 181 LASAATDNADESAVC 194

[Close]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot
Match: P30155 (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.0e-70
Identity = 139/170 (81.76%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 5   AMSFNLVGAFKGLSLARSSSSTFFNGDFG-TIQAPPKLSVSFPNRFPLTIQNAHKKGAGS 64
           A+SF+LVGAFKGLSLA  SSS+F  GDFG      PK SVSFP + PLTI++AHKKGAGS
Sbjct: 2   AVSFSLVGAFKGLSLA--SSSSFLKGDFGAAFPVAPKFSVSFPLKSPLTIESAHKKGAGS 61

Query: 65  TKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKF 124
           TKNGRDS GQRLGVKIFGDQ+AKPGSIIVRQRGTKFH GKNVGLGKDHTIFSLIDGLVKF
Sbjct: 62  TKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 121

Query: 125 EKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQ 174
           EK GPD+KK+SVYPREVQPENPNSYR RKRE FRLQRER+KAR+EG+I Q
Sbjct: 122 EKFGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169

[Close]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot
Match: Q9FLN4 (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.5e-66
Identity = 136/197 (69.04%), Postives = 157/197 (79.70%), Query Frame = 0


Query: 4   TAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNR-----FPLTIQNAHK 63
           T+MS NL+GAFKGLSL  SS+S+F  GD  +       +V+ P        PLTI++AHK
Sbjct: 5   TSMSLNLIGAFKGLSL--SSTSSFLRGDL-SFSPKTSFTVTLPLENLQAPIPLTIESAHK 64

Query: 64  KGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 123
           KGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLID
Sbjct: 65  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLID 124

Query: 124 GLVKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---MIAQPQ 183
           GLVKFEK GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P+
Sbjct: 125 GLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPE 184

Query: 184 LLL--ASTDDTETNPVC 191
           L+L  AS DD E NP C
Sbjct: 185 LVLASASVDDAEANPEC 198

[Close]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot
Match: O65037 (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-61
Identity = 128/196 (65.31%), Postives = 153/196 (78.06%), Query Frame = 0


Query: 3   VTAMSFNLVGAFKGLSLA----RSSSSTFFNGDFGTIQAPPKLSVSFPNRFP---LTIQN 62
           + +M+F LVGAFKG+SL+     SSS++F   D  ++     + +  P   P   LTIQ 
Sbjct: 1   MASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQM 60

Query: 63  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 122
           AHKKGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+II+RQRGT+ + G NVG+GKDHT+FS
Sbjct: 61  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFS 120

Query: 123 LIDGLVKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQ 182
           LIDGLVKFEK GPDKKKVSVYP E QPENPNSYRARKREYFR+QRERKKAR EG I + Q
Sbjct: 121 LIDGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEG-IVEVQ 180

Query: 183 LLLASTDDT-ETNPVC 191
           L+LA+ D++ E N  C
Sbjct: 181 LVLAAADESPEVNADC 195

[Close]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot
Match: A6Q4D3 (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpmA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           AHKKG GST+N RDS G+RLGVK FG +  + G+II+RQRGTK H G NVGLGKDHTIF+
Sbjct: 2   AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61

Query: 116 LIDGLVKFEKSGPDKKKVSVYPRE 140
           LIDG+VKFE+ G D++KVSVYP E
Sbjct: 62  LIDGVVKFERYGKDRQKVSVYPVE 85

[Close]

BLAST of Sed0006067 vs. ExPASy TrEMBL
Match: A0A6J1K388 (50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489672 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 169/185 (91.35%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 6   MSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTK 65
           MS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFPNRFPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLASSSSSSFFKGDFGSIQLPPKLSVSFPNRFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 SGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTE 185
            GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG I+QPQL+LASTD TE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSISQPQLVLASTDATE 180

Query: 186 TNPVC 191
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Sed0006067 vs. ExPASy TrEMBL
Match: A0A6J1BXH1 (50S ribosomal protein L27, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006224 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.8e-89
Identity = 170/190 (89.47%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MAVTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKG 60
           M V AMS NLVGAF+GLSL  SSSS+FF GDF ++Q PPK S+SFPNRFPLTI+NAHKKG
Sbjct: 1   MPVAAMSLNLVGAFRGLSLVSSSSSSFFRGDFASVQPPPKFSLSFPNRFPLTIENAHKKG 60

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL
Sbjct: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120

Query: 121 VKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLAS 180
           VKFEK GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LAS
Sbjct: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGSIAQPQLVLAS 180

Query: 181 TDDTETNPVC 191
           +D TETNPVC
Sbjct: 181 SDATETNPVC 190

[Close]

BLAST of Sed0006067 vs. ExPASy TrEMBL
Match: A0A6J1FG23 (50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445091 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.5e-89
Identity = 169/185 (91.35%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 6   MSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKGAGSTK 65
           MS NL+GAF+GLSLA SSSS+FF GDFG+IQ PPKLSVSFP RFPLTI+NAHKKGAGSTK
Sbjct: 1   MSLNLIGAFRGLSLAPSSSSSFFKGDFGSIQLPPKLSVSFPTRFPLTIENAHKKGAGSTK 60

Query: 66  NGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 125
           NGRDSKGQRLGVKI+GDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK
Sbjct: 61  NGRDSKGQRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEK 120

Query: 126 SGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLASTDDTE 185
            GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG IAQPQL+LASTD TE
Sbjct: 121 YGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGTIAQPQLVLASTDATE 180

Query: 186 TNPVC 191
           TNPVC
Sbjct: 181 TNPVC 185

[Close]

BLAST of Sed0006067 vs. ExPASy TrEMBL
Match: A0A6J1JNS6 (50S ribosomal protein L27, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486989 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.5e-88
Identity = 168/190 (88.42%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MAVTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKG 60
           M VTAMS NLVGAF+GLSL  SSSS+FF GDFG+IQ PP LSVSFPNRFPLTI++AHKKG
Sbjct: 1   MPVTAMSLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKG 60

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL
Sbjct: 61  AGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120

Query: 121 VKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLAS 180
           VKFEK GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QL+LAS
Sbjct: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILAS 180

Query: 181 TDDTETNPVC 191
           TD   TNP+C
Sbjct: 181 TDAPVTNPIC 190

[Close]

BLAST of Sed0006067 vs. ExPASy TrEMBL
Match: A0A6J1E4G2 (50S ribosomal protein L27, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430701 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.7e-87
Identity = 167/189 (88.36%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MAVTAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNRFPLTIQNAHKKG 60
           M VTAM+ NLVGAF+GLSL  SSSS+FF GDFG+IQ PP LSVSFPNRFPLTI++AHKKG
Sbjct: 1   MPVTAMTLNLVGAFRGLSLVSSSSSSFFKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKG 60

Query: 61  AGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120
           AGSTKNGRDSKGQRLGVKIFGDQ+AKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL
Sbjct: 61  AGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGL 120

Query: 121 VKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGMIAQPQLLLAS 180
           VKFEK GPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG++AQ QL+LAS
Sbjct: 121 VKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLVLAS 180

Query: 181 TDDTETNPV 190
           TD  ETNP+
Sbjct: 181 TDAPETNPI 189

[Close]

BLAST of Sed0006067 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-67
Identity = 136/197 (69.04%), Postives = 157/197 (79.70%), Query Frame = 0


Query: 4   TAMSFNLVGAFKGLSLARSSSSTFFNGDFGTIQAPPKLSVSFPNR-----FPLTIQNAHK 63
           T+MS NL+GAFKGLSL  SS+S+F  GD  +       +V+ P        PLTI++AHK
Sbjct: 5   TSMSLNLIGAFKGLSL--SSTSSFLRGDL-SFSPKTSFTVTLPLENLQAPIPLTIESAHK 64

Query: 64  KGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLID 123
           KGAGSTKNGRDS GQRLGVKI+GDQ+AKPG+IIVRQRGTKFHAGKNVG+GKDHTIFSLID
Sbjct: 65  KGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLID 124

Query: 124 GLVKFEKSGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEG---MIAQPQ 183
           GLVKFEK GPD+KK+SVYPRE+ PENPNSYRARKRE FRLQRE+KKAR+E     +  P+
Sbjct: 125 GLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPE 184

Query: 184 LLL--ASTDDTETNPVC 191
           L+L  AS DD E NP C
Sbjct: 185 LVLASASVDDAEANPEC 198

[Close]

BLAST of Sed0006067 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEKS 127
           L +G V+FEKS
Sbjct: 107 LKEGRVRFEKS 117

[Close]

BLAST of Sed0006067 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEKS 127
           L +G V+FEKS
Sbjct: 107 LKEGRVRFEKS 117

[Close]

BLAST of Sed0006067 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEKS 127
           L +G V+FEKS
Sbjct: 107 LKEGRVRFEKS 117

[Close]

BLAST of Sed0006067 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 56  AHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFS 115
           A KK AGSTKNGRDS  + LGVK FG +   PG+IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 47  ATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 106

Query: 116 LIDGLVKFEKS 127
           L +G V+FEKS
Sbjct: 107 LKEGRVRFEKS 117

The following BLAST results are available for this feature:

BLAST of Sed0006067 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015950.1	3.2e-90	91.49	50S ribosomal protein L27, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
XP_023550670.1	2.1e-89	91.89	50S ribosomal protein L27, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023550...	[more]
XP_022993762.1	4.6e-89	91.35	50S ribosomal protein L27, chloroplastic [Cucurbita maxima] >XP_022993763.1 50S ...	[more]
XP_022133707.1	7.9e-89	89.47	50S ribosomal protein L27, chloroplastic [Momordica charantia]	[more]
XP_022939083.1	1.3e-88	91.35	50S ribosomal protein L27, chloroplastic [Cucurbita moschata] >XP_022939084.1 50...	[more]

BLAST of Sed0006067 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82190	2.4e-72	73.33	50S ribosomal protein L27, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL27 P...	[more]
P30155	5.0e-70	81.76	50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL27 P...	[more]
Q9FLN4	7.5e-66	69.04	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
O65037	5.5e-61	65.31	50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
A6Q4D3	4.7e-28	70.24	50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) OX=387092 GN=rpm...	[more]

BLAST of Sed0006067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K388	2.2e-89	91.35	50S ribosomal protein L27, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BXH1	3.8e-89	89.47	50S ribosomal protein L27, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FG23	6.5e-89	91.35	50S ribosomal protein L27, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JNS6	5.5e-88	88.42	50S ribosomal protein L27, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1E4G2	2.7e-87	88.36	50S ribosomal protein L27, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Sed0006067 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40950.1	5.3e-67	69.04	ribosomal protein large subunit 27	[more]
AT2G16930.2	4.9e-20	66.20	Ribosomal protein L27 family protein	[more]
AT2G16930.1	4.9e-20	66.20	Ribosomal protein L27 family protein	[more]
AT2G16930.3	4.9e-20	66.20	Ribosomal protein L27 family protein	[more]
AT5G15220.1	4.9e-20	66.20	Ribosomal protein L27 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..168
None	No IPR available	GENE3D	2.40.50.100		coord: 60..168 e-value: 2.1E-29 score: 103.8
None	No IPR available	PANTHER	PTHR15893:SF0	39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL	coord: 37..183
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 56..137
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 108..132 score: 49.08 coord: 58..82 score: 66.77 coord: 83..107 score: 62.46
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 55..135 e-value: 1.1E-36 score: 122.8
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 56..135 e-value: 3.6E-36 score: 123.0
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 37..183
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 55..138 score: 27.182213
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 88..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006067.1	Sed0006067.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0003735	structural constituent of ribosome