Sed0006029 (gene) Chayote v1

Overview


Name	Sed0006029
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING/FYVE/PHD-type zinc finger family protein isoform 1
Location	LG08: 39101815 .. 39102129 (-)
RNA-Seq Expression	Sed0006029
Synteny	Sed0006029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGAGCTCCGATCTTCCCAGATCTTTCTTCATTTTCATCATCTTCTTCATCTTCACATCAATCTTCTTCGCCTCATGCAATTCCCTATCCGAGCATCGCAAATCCAACACGCCCATTTCAGATCGCAGTTTGTTGAGCTTACAGAGAAGGAGAACTCAACAGATCCCTAATTGCGGCGAGAAGGTTTCCCCCTCACAGTGTTCGCAGAGCCCCAAATGCCGCTGGTGCCGGAGCGATCTCGTCGACGATACCTGCTTCTCCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

mRNA sequence

ATGGAACTGAGCTCCGATCTTCCCAGATCTTTCTTCATTTTCATCATCTTCTTCATCTTCACATCAATCTTCTTCGCCTCATGCAATTCCCTATCCGAGCATCGCAAATCCAACACGCCCATTTCAGATCGCAGTTTGTTGAGCTTACAGAGAAGGAGAACTCAACAGATCCCTAATTGCGGCGAGAAGGTTTCCCCCTCACAGTGTTCGCAGAGCCCCAAATGCCGCTGGTGCCGGAGCGATCTCGTCGACGATACCTGCTTCTCCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

Coding sequence (CDS)

ATGGAACTGAGCTCCGATCTTCCCAGATCTTTCTTCATTTTCATCATCTTCTTCATCTTCACATCAATCTTCTTCGCCTCATGCAATTCCCTATCCGAGCATCGCAAATCCAACACGCCCATTTCAGATCGCAGTTTGTTGAGCTTACAGAGAAGGAGAACTCAACAGATCCCTAATTGCGGCGAGAAGGTTTCCCCCTCACAGTGTTCGCAGAGCCCCAAATGCCGCTGGTGCCGGAGCGATCTCGTCGACGATACCTGCTTCTCCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA

Protein sequence

MELSSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

Homology

[Close]

BLAST of Sed0006029 vs. NCBI nr
Match: KAG6573331.1 (hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 13  IFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQS 72
           IF++ F+F S    S N+LSE RK N P SDR LLSLQRRR ++IPNCGEKVS  QCS++
Sbjct: 13  IFLVSFLFFSFICVSSNALSETRKFNLPSSDRGLLSLQRRRDRRIPNCGEKVSALQCSET 72

Query: 73  PKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
           P CRWCRSD +DDTCFSRAEALRLPQQVFSCD
Sbjct: 73  PNCRWCRSDAIDDTCFSRAEALRLPQQVFSCD 104

[Close]

BLAST of Sed0006029 vs. NCBI nr
Match: KAA0044701.1 (hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK16886.1 hypothetical protein E5676_scaffold130G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 30  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFS 89
           +LS  RK N+P S R+L +LQRRR QQI NCGEKVS SQCSQ+ KCRWCRSD++DDTCF+
Sbjct: 3   NLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFT 62

Query: 90  RAEALRLPQQVFSCD 105
           RAEALRLPQQVFSCD
Sbjct: 63  RAEALRLPQQVFSCD 77

[Close]

BLAST of Sed0006029 vs. NCBI nr
Match: OMO65460.1 (hypothetical protein COLO4_31211 [Corchorus olitorius])

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 44  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSC 103
           RSLL+LQR    QIPNCGE +S SQC Q+PKCRWCRS+ +DD CF ++EA RLPQQVF C
Sbjct: 39  RSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQVFLC 98

Query: 104 D 105
           D
Sbjct: 99  D 99

[Close]

BLAST of Sed0006029 vs. NCBI nr
Match: KDP21149.1 (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-16
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 10  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQC 69
           SF IF+IF    ++  +S +  S  +  +   S RSLL+ QR   QQIPNC   V+ SQC
Sbjct: 9   SFSIFLIF--LATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQC 68

Query: 70  SQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
           SQ+PKCRWC+S+ +DD CFS+ EA RLPQQVF CD
Sbjct: 69  SQNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of Sed0006029 vs. NCBI nr
Match: XP_038723734.1 (uncharacterized protein LOC120015395 [Tripterygium wilfordii])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 47/99 (47.47%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 10  SFFIFIIFFIFTSIFFA-SCNSLSEHRKSNTPISDRSLLSLQRR---RTQQIPNCGEKVS 69
           S  + ++  IF+ ++ A S + ++     ++  S RS+L+ QRR    ++QIP+CG+ VS
Sbjct: 8   SIILLLLLLIFSFLYQASSSHGIAAGEDISSTTSYRSILAEQRRGRTGSRQIPDCGQMVS 67

Query: 70  PSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
            S CSQ+P+CRWCRSD +DD CFS+ EA RLPQQVF+CD
Sbjct: 68  RSHCSQNPQCRWCRSDELDDMCFSKTEARRLPQQVFTCD 106

[Close]

BLAST of Sed0006029 vs. ExPASy TrEMBL
Match: A0A0A0LX55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 71/101 (70.30%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 4   SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEK 63
           SS L     IF+I F+F   FF SCN+LS  RK N+P S R+L SLQRRR QQI NCGEK
Sbjct: 5   SSHLSSPLSIFLISFLF--FFFISCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCGEK 64

Query: 64  VSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
           VS  QCSQ+PKCRWCRSD++DDTCF+RAEALRLPQQVFSCD
Sbjct: 65  VSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of Sed0006029 vs. ExPASy TrEMBL
Match: A0A5A7TT10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00180 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 30  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFS 89
           +LS  RK N+P S R+L +LQRRR QQI NCGEKVS SQCSQ+ KCRWCRSD++DDTCF+
Sbjct: 3   NLSPDRKFNSPSSYRTLSNLQRRRDQQISNCGEKVSASQCSQTLKCRWCRSDVIDDTCFT 62

Query: 90  RAEALRLPQQVFSCD 105
           RAEALRLPQQVFSCD
Sbjct: 63  RAEALRLPQQVFSCD 77

[Close]

BLAST of Sed0006029 vs. ExPASy TrEMBL
Match: A0A1R3H5C1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 44  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSC 103
           RSLL+LQR    QIPNCGE +S SQC Q+PKCRWCRS+ +DD CF ++EA RLPQQVF C
Sbjct: 39  RSLLALQRNNKNQIPNCGEMMSRSQCLQNPKCRWCRSEALDDMCFIKSEAWRLPQQVFLC 98

Query: 104 D 105
           D
Sbjct: 99  D 99

[Close]

BLAST of Sed0006029 vs. ExPASy TrEMBL
Match: A0A067JNS3 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-16
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 10  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQC 69
           SF IF+IF    ++  +S +  S  +  +   S RSLL+ QR   QQIPNC   V+ SQC
Sbjct: 9   SFSIFLIF--LATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQC 68

Query: 70  SQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
           SQ+PKCRWC+S+ +DD CFS+ EA RLPQQVF CD
Sbjct: 69  SQNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of Sed0006029 vs. ExPASy TrEMBL
Match: A0A061GFG8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029626 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 4   SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISD--RSLLSLQRRRTQQIPNCG 63
           SS L   F I  +  +  S   +S +S  ++     P     R+LL LQR    QIP+CG
Sbjct: 5   SSKLSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQIPSCG 64

Query: 64  EKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD 105
           E +S SQC Q+PKCRWC S+ +D+ CFS+AEA RLPQQVF CD
Sbjct: 65  EMMSRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

The following BLAST results are available for this feature:

BLAST of Sed0006029 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573331.1	1.1e-28	71.74	hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044701.1	1.1e-23	76.00	hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa] >TYK1688...	[more]
OMO65460.1	4.9e-16	68.85	hypothetical protein COLO4_31211 [Corchorus olitorius]	[more]
KDP21149.1	6.4e-16	52.63	hypothetical protein JCGZ_21620 [Jatropha curcas]	[more]
XP_038723734.1	2.0e-14	47.47	uncharacterized protein LOC120015395 [Tripterygium wilfordii]	[more]

BLAST of Sed0006029 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0006029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX55	1.1e-29	70.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G467180 PE=4 SV=1	[more]
A0A5A7TT10	5.2e-24	76.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1R3H5C1	2.4e-16	68.85	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31211 PE=4 SV=1	[more]
A0A067JNS3	3.1e-16	52.63	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21620 PE=4 SV=1	[more]
A0A061GFG8	2.2e-14	47.57	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029626 PE=4 SV=1	[more]

BLAST of Sed0006029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36896	OS01G0729500 PROTEIN	coord: 15..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006029.1	Sed0006029.1	mRNA