Sed0006002 (gene) Chayote v1

BLAST of Sed0006002 vs. NCBI nr
Match: XP_022145356.1 (DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145357.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145358.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145359.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia] >XP_022145360.1 DNA-directed RNA polymerase II subunit 1 [Momordica charantia])

HSP 1 Score: 3525.7 bits (9141), Expect = 0.0e+00
Identity = 1798/1854 (96.98%), Postives = 1829/1854 (98.65%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQA+RIKNPKN+L+KILDACKNKTKCEGGDEIDVQG+ESEQPVKKG GGCGAQQPKI I
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISD+DCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESETGFITPGDTFVRIEKGEL+SGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS+AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+TDESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+YEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            TGPSP++SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKD+R NR
Sbjct: 1801 TGPSPEFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSNR 1854

BLAST of Sed0006002 vs. NCBI nr
Match: XP_038904743.1 (DNA-directed RNA polymerase II subunit RPB1 [Benincasa hispida])

HSP 1 Score: 3523.8 bits (9136), Expect = 0.0e+00
Identity = 1794/1847 (97.13%), Postives = 1824/1847 (98.75%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILV ++DPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVSEDDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQA+RIKNPKN+LRKILDACKNKTKCEGGDEIDVQG+ES+QP KKG GGCGAQQPKI I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQESDQPAKKGRGGCGAQQPKITI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            +GMKM AEYK QRKKND+QEQ+PEPVERKQTLTAERVLG+LKRI+D+DCKLLGLNPK+AR
Sbjct: 181  EGMKMTAEYKPQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+TDESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS 1740
            PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS 1740

Query: 1741 PSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDY 1800
            PSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDY
Sbjct: 1741 PSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDY 1800

Query: 1801 SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTS+KDDRSRKD+R NR
Sbjct: 1801 SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNNR 1847

BLAST of Sed0006002 vs. NCBI nr
Match: XP_004146161.3 (DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >XP_011650276.2 DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >KAE8649994.1 hypothetical protein Csa_011172 [Cucumis sativus])

HSP 1 Score: 3508.0 bits (9095), Expect = 0.0e+00
Identity = 1792/1853 (96.71%), Postives = 1820/1853 (98.22%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQA+RIKNPKN+LRKILDACKNKTKCEGGDEIDVQG++S+QPVKK  GGCGAQQPKI I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            +GMKM AEYKAQRKKND+ EQ+PEPVERKQTLTAERVLG+LKRI+D+DCKLLGLNPK+AR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMN LMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESETG ITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+TDESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+ HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAY PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGN 1847
            TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTS+KDDRSRKD+R N
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN 1853

BLAST of Sed0006002 vs. NCBI nr
Match: TYK11392.1 (DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3503.4 bits (9083), Expect = 0.0e+00
Identity = 1797/1889 (95.13%), Postives = 1825/1889 (96.61%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVR VQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRK+KCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQAMRIKNPKNKLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPKFKQA+RIKNPKN+LRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYIDGMKMMAEYKAQRKKNDEQEQMPEP 240
            KCEGGDEIDVQG++S+QPVKK  GGCGAQQPKI I+GMKM AEYKAQRKKND+QEQ+PEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGVLKRISDDDCKLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLG+LKRI+DDDCKLLGLNPK+ARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540
            ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600
            QSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLMRTSAWHVESETGFITPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINL RTSAWH ESETG +TPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISIAKNDVKTLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETIS AKN+VK LIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKNEFDRAFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF+R FRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  QLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDALSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGED LSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGC+AAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKSDANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK +ANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTDESAEDDVFLKKIAS 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGE+TDESAEDDVFLKKI S
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAK 1380
            NMLTEMALRGIPDINKVFIK GKV KFD+ EGFKPEMEWMLDTEGVNLLAV+CHEDVDA+
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPA-------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPSSPGYSPTSPA       YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
            PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740

Query: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800
            PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY
Sbjct: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800

Query: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1848
            SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP
Sbjct: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1860

BLAST of Sed0006002 vs. NCBI nr
Match: XP_022971615.1 (DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima] >XP_022971616.1 DNA-directed RNA polymerase II subunit 1 [Cucurbita maxima])

HSP 1 Score: 3502.2 bits (9080), Expect = 0.0e+00
Identity = 1788/1854 (96.44%), Postives = 1822/1854 (98.27%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQAMRI+NPKN+L+KILDACKNKTKCEGGDEIDVQG++S+QPVK+G GGCGAQQPKI I
Sbjct: 121  FKQAMRIRNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISDDDCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESE+GFITPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            TG SPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYT QT++KDDRSRKD+R NR
Sbjct: 1801 TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

BLAST of Sed0006002 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 3201.4 bits (8299), Expect = 0.0e+00
Identity = 1619/1852 (87.42%), Postives = 1735/1852 (93.68%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMRCVCFNCSKIL D+E+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEI-DVQGEESEQPVKKGPGGCGAQQPKIY 180
            FKQAM+IKNPKN+L+KILDACKNKTKC+GGD+I DVQ   +++PVKK  GGCGAQQPK+ 
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFA 240
            I+GMKM+AEYK QRKKNDE +Q+PEP ERKQTL A+RVL VLKRISD DC+LLG NPKFA
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 660
            NL+R SAWH ++ETGFITPGDT VRIE+GELL+GTLCKK LGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSI 960
            KLDSLKMKK+EFDR F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE D  
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+DALSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
              +A+K+KE AKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFK 1320
            MNDE PKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK  +  +FD+  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD KRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 1740
            SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNPQSAKY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1740

Query: 1741 SPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPD 1800
            SPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY++G SPD
Sbjct: 1741 SPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD 1800

Query: 1801 YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDR-----SRKDNRGN 1847
                   YSPSAGYSPT PGYSPSST QYTP   +K D+     + KD++GN
Sbjct: 1801 -------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDKGN 1838

BLAST of Sed0006002 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 2145.9 bits (5559), Expect = 0.0e+00
Identity = 1125/1757 (64.03%), Postives = 1373/1757 (78.14%), Query Frame = 0

Query: 5    FPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKL 64
            FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK  GL DP +GTID+  
Sbjct: 5    FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQA 124
            +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+RCVC++CSK+L D  +  F+QA
Sbjct: 65   RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124

Query: 125  MRIKNPKNKLRKILDACKNKTKCE-GGDE-----IDVQGEESEQPVKKGPGGCGAQQPKI 184
            ++I+N K++L  ++D CKNK  C  GG+E     +    EE ++PVK   GGCG   PKI
Sbjct: 125  LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKH--GGCGNVLPKI 184

Query: 185  YIDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKF 244
              + +K++ E+K         +   E +E+K  L+AERVL +LKRI D+D + +G+NP +
Sbjct: 185  TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 244

Query: 245  ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 304
            AR DWMI  VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N  L+RQE+NG+PAHI
Sbjct: 245  ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 304

Query: 305  ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 364
            I+E  Q LQFH+ATY DNE+PGLP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFS
Sbjct: 305  IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 364

Query: 365  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 424
            ARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYI
Sbjct: 365  ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYI 424

Query: 425  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 484
            IR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPY
Sbjct: 425  IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 484

Query: 485  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 544
            STFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQ+NRPVMGIVQ
Sbjct: 485  STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 544

Query: 545  DTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQ 604
            DTLLG R  TKRD F+ KD+ MNILMW   +DGK+P PAILKP+ LWTGKQ+F+LIIP  
Sbjct: 545  DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 604

Query: 605  INLMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPD 664
            INL+R ++ H + E    + GDT V IE+GELL+G LCK++LG + GS+IHV+  E G D
Sbjct: 605  INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 664

Query: 665  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQER 724
              R F+  TQ +VN+WL+   F++GIGDTIAD+ATM K+  TIS AKN VK LI KAQ +
Sbjct: 665  TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 724

Query: 725  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 784
              E +PG++++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 725  QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 784

Query: 785  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGG 844
            M ACVGQQNVEGKRIPFGF  RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 785  MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844

Query: 845  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 904
            REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+
Sbjct: 845  REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 904

Query: 905  QKLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADS 964
            Q +DSL+    E +R +R++ +  ++   +M P  +E ++     R+  E E +++++D 
Sbjct: 905  QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 964

Query: 965  IQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1024
              L  EI  +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK+
Sbjct: 965  SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1024

Query: 1025 VPGEDALS---------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIE 1084
            +   D             E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIE
Sbjct: 1025 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1084

Query: 1085 SRFLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKR 1144
            S+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1085 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1144

Query: 1145 IKTPSLSVYLKSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFV 1204
            +KTPSL++YLK    +  +RAK V+  LEYTTL +VT ATEI+YDPDP +TII ED +FV
Sbjct: 1145 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1204

Query: 1205 KSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDN 1264
             SY+E+PDEEI    +SPWLLRIEL+R M+ DKKL+MA+I + +  +F   L CIF+DDN
Sbjct: 1205 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1264

Query: 1265 AEKLILRIRIMNDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKS-GK 1324
            AEKLILRIR++  +  KG   D   +DD FL++I SNML+EM LRGI  I KVF+++  K
Sbjct: 1265 AEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1324

Query: 1325 VIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSL 1384
            + K  +  GF    EW+LDT+GV+LL V+ H DVD  RTTSN ++E+I+VLGIEAVR +L
Sbjct: 1325 IPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1384

Query: 1385 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1444
            L ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+I
Sbjct: 1385 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1444

Query: 1445 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLP-----SYID 1504
            L+DAA+++ETD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     SY D
Sbjct: 1445 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD 1504

Query: 1505 GLDFGMTPSRSPISG--TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSP 1564
                  TPS S   G  TP+H    +P         LSP ++     + G  + S  +SP
Sbjct: 1505 -TPGSQTPSYSYGDGSTTPFHNPYDAP---------LSPFNET----FRGDFSPSAMNSP 1564

Query: 1565 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1624
            GY+ ++  Y  SS  Y P SP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSP
Sbjct: 1565 GYN-ANKSYG-SSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624

Query: 1625 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1684
            TSPSYSPTSP YSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPS
Sbjct: 1625 TSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1684

Query: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1739
            YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP+SP+YSP+SP YSP+SPSYSP+
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPS 1726

BLAST of Sed0006002 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2076.6 bits (5379), Expect = 0.0e+00
Identity = 1121/1900 (59.00%), Postives = 1418/1900 (74.63%), Query Frame = 0

Query: 8    SPAEVAKVRTVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++RCVCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEID----VQGEESEQPV--KKGPGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D    V+  E ++ +  +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  IYIDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPK 247
            I   G+++ AE+K     N++ +      E+K  L+ ERV  + KRISD++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            +ARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLMRTSAWHVESETG----FITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN +RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK DV  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK     F++ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADSIQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  D   L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+D LS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L   + +  ERAK + C LE+TTLR VT  T I+YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGEMTDE---SAEDDVFLKKIASNMLTEMALRGIPDINKVFI-----K 1327
            +LRIRIMN +  K +  +E     +DDVFL+ I SNMLT+M L+GI  I+KV++      
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 SGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVR 1387
            + K I   +   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPT---SSPGYSPSSP-GYSPS 1627
                               SP S    SPY+   G A SP+   +SP Y P SP GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1687
            SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSP+YSPTSP YSPTSP+Y+PTSP+YSPTSPSY+
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSP 1831
            P S  YSP S +YSPSSPR +P SP Y+P+SP+YSP+SPSYSPTSP Y+P+SP+YSPSSP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

BLAST of Sed0006002 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 2076.6 bits (5379), Expect = 0.0e+00
Identity = 1121/1900 (59.00%), Postives = 1418/1900 (74.63%), Query Frame = 0

Query: 8    SPAEVAKVRTVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++RCVCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEID----VQGEESEQPV--KKGPGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D    V+  E ++ +  +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  IYIDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPK 247
            I   G+++ AE+K     N++ +      E+K  L+ ERV  + KRISD++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            +ARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLMRTSAWHVESETG----FITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN +RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK DV  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK     F++ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADSIQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  D   L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+D LS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L   + +  ERAK + C LE+TTLR VT  T I+YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGEMTDE---SAEDDVFLKKIASNMLTEMALRGIPDINKVFI-----K 1327
            +LRIRIMN +  K +  +E     +DDVFL+ I SNMLT+M L+GI  I+KV++      
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 SGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVR 1387
            + K I   +   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPT---SSPGYSPSSP-GYSPS 1627
                               SP S    SPY+   G A SP+   +SP Y P SP GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1687
            SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSP+YSPTSP YSPTSP+Y+PTSP+YSPTSPSY+
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSP 1831
            P S  YSP S +YSPSSPR +P SP Y+P+SP+YSP+SPSYSPTSP Y+P+SP+YSPSSP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

BLAST of Sed0006002 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2074.7 bits (5374), Expect = 0.0e+00
Identity = 1120/1900 (58.95%), Postives = 1417/1900 (74.58%), Query Frame = 0

Query: 8    SPAEVAKVRTVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++RCVCF CSK+LVD  +PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEID----VQGEESEQPV--KKGPGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D    V+  E ++ +  +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  IYIDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPK 247
            I   G+++ AE+K     N++ +      E+K  L+ ERV  + KRISD++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  FARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            +ARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPK 607
            QDTL   RK TKRD F+ +   MN+LM+   +DGK+P PAILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLMRTSAWHVESETG----FITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWE 667
             IN +RT + H + E       I+PGDT V +E GEL+ G LCKK+LGTS GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK DV  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK     F++ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADSIQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  D   L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+D LS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L   + +  ERAK + C LE+TTLR VT  T I+YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGEMTDE---SAEDDVFLKKIASNMLTEMALRGIPDINKVFI-----K 1327
            +LRIRIMN +  K +  +E     +DDVFL+ I SNMLT+M L+GI  I+KV++      
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 SGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVR 1387
            + K I   +   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV--GGMAFSPT---SSPGYSPSSP-GYSPS 1627
                               SP S    SPY+   G A SP+   +SP Y P SP GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1687
            SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSP+YSPTSP YSPTSP+Y+PTSP+YSPTSPSY+
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PQSAKYSP-SQAYSPSSPRLSPSSP-YSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSP 1831
            P S  YSP S +YSPSSPR +P SP Y+P+SP+YSP+SPSYSP SP Y+P+SP+YSPSSP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSP 1870

BLAST of Sed0006002 vs. ExPASy TrEMBL
Match: A0A6J1CV04 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014830 PE=3 SV=1)

HSP 1 Score: 3525.7 bits (9141), Expect = 0.0e+00
Identity = 1798/1854 (96.98%), Postives = 1829/1854 (98.65%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQA+RIKNPKN+L+KILDACKNKTKCEGGDEIDVQG+ESEQPVKKG GGCGAQQPKI I
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISD+DCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESETGFITPGDTFVRIEKGEL+SGTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS+AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+TDESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+YEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            TGPSP++SPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKD+R NR
Sbjct: 1801 TGPSPEFSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDDRSNR 1854

BLAST of Sed0006002 vs. ExPASy TrEMBL
Match: A0A5D3CJC8 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00440 PE=3 SV=1)

HSP 1 Score: 3503.4 bits (9083), Expect = 0.0e+00
Identity = 1797/1889 (95.13%), Postives = 1825/1889 (96.61%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVR VQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRK+KCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQAMRIKNPKNKLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPKFKQA+RIKNPKN+LRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYIDGMKMMAEYKAQRKKNDEQEQMPEP 240
            KCEGGDEIDVQG++S+QPVKK  GGCGAQQPKI I+GMKM AEYKAQRKKND+QEQ+PEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGVLKRISDDDCKLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLG+LKRI+DDDCKLLGLNPK+ARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540
            ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  QSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600
            QSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLMRTSAWHVESETGFITPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINL RTSAWH ESETG +TPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISIAKNDVKTLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETIS AKN+VK LIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKNEFDRAFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK EF+R FRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  QLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDALSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGED LSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGC+AAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKSDANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK +ANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATE+WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTDESAEDDVFLKKIAS 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGE+TDESAEDDVFLKKI S
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAK 1380
            NMLTEMALRGIPDINKVFIK GKV KFD+ EGFKPEMEWMLDTEGVNLLAV+CHEDVDA+
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPA-------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
            SPSSPGYSPTSPA       YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
            PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
Sbjct: 1681 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740

Query: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800
            PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY
Sbjct: 1741 PTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPRLSPSSPY 1800

Query: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1848
            SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP
Sbjct: 1801 SPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP 1860

BLAST of Sed0006002 vs. ExPASy TrEMBL
Match: A0A6J1I682 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470290 PE=3 SV=1)

HSP 1 Score: 3502.2 bits (9080), Expect = 0.0e+00
Identity = 1788/1854 (96.44%), Postives = 1822/1854 (98.27%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQAMRI+NPKN+L+KILDACKNKTKCEGGDEIDVQG++S+QPVK+G GGCGAQQPKI I
Sbjct: 121  FKQAMRIRNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISDDDCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESE+GFITPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            TG SPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYT QT++KDDRSRKD+R NR
Sbjct: 1801 TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

BLAST of Sed0006002 vs. ExPASy TrEMBL
Match: A0A6J1L0Z7 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111500163 PE=3 SV=1)

HSP 1 Score: 3501.8 bits (9079), Expect = 0.0e+00
Identity = 1785/1848 (96.59%), Postives = 1817/1848 (98.32%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKV+ VQFGIL PDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD++DPK
Sbjct: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQG++ +QPVKKG GGCGAQQPKI I
Sbjct: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGQDPDQPVKKGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISD+DCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD+
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAP ILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESETGFITPGDTFVRIEKGELL+GTLCKKALG+S GSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTII+EDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLR+ELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+TDESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDESEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGC+LYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPR+SPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRMSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRK 1842
            TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSS SQYTPQTS+KDDRS +
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSNSQYTPQTSDKDDRSNR 1848

BLAST of Sed0006002 vs. ExPASy TrEMBL
Match: A0A6J1ELE9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435248 PE=3 SV=1)

HSP 1 Score: 3501.4 bits (9078), Expect = 0.0e+00
Identity = 1788/1854 (96.44%), Postives = 1822/1854 (98.27%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVR VQFGILSPDEIRQMSVVQIEHGETTERGKPKV GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMR VCFNCSKILVD+EDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYI 180
            FKQAMRIKNPKN+L+KILDACKNKTKCEGGDEIDVQG++S+QPVK+G GGCGAQQPKI I
Sbjct: 121  FKQAMRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDSDQPVKRGRGGCGAQQPKISI 180

Query: 181  DGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFAR 240
            DGMKM+AEYKAQRKKND+QEQ+PEPVERKQTL+AERVLGVLKRISDDDCKLLGLNPK+AR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PD MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDSMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
            LLGCRKITKRDTFITKDVFMNILMWWEDFDGK+PAPAILKPQPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
            L RTSAWH ESE+GFITPGDTFVRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LSRTSAWHSESESGFITPGDTFVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSL 720
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETIS AKN+VK LIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900

Query: 901  LDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQ 960
            LDSLKMKK EF+R FRYEFEDENWKP+YMLPEHVEDLKTIREFRNVFEAEVQKLEAD  Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPSYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GED LSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 SDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
             +ANKTKERAKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDMDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKP 1320
            NDEAPKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK GKV KFD+ EGFKP
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVICHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL+FGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLEFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA       YSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
            PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
Sbjct: 1741 PQSAKYSPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDRSRKDNRGNR 1848
            TG SPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYT QT++KDDRSRKD+R NR
Sbjct: 1801 TGASPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTSQTTDKDDRSRKDDRSNR 1854

BLAST of Sed0006002 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 3201.4 bits (8299), Expect = 0.0e+00
Identity = 1619/1852 (87.42%), Postives = 1735/1852 (93.68%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMRCVCFNCSKIL D+E+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEI-DVQGEESEQPVKKGPGGCGAQQPKIY 180
            FKQAM+IKNPKN+L+KILDACKNKTKC+GGD+I DVQ   +++PVKK  GGCGAQQPK+ 
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMMAEYKAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKRISDDDCKLLGLNPKFA 240
            I+GMKM+AEYK QRKKNDE +Q+PEP ERKQTL A+RVL VLKRISD DC+LLG NPKFA
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  TLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQI 600
            TLLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDA 660
            NL+R SAWH ++ETGFITPGDT VRIE+GELL+GTLCKK LGTS GSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDD+GPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSI 960
            KLDSLKMKK+EFDR F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE D  
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDALSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+DALSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGC+AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
              +A+K+KE AKTVQCALEYTTLRSVTQATE+WYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFK 1320
            MNDE PKGE+ DESAEDDVFLKKI SNMLTEMALRGIPDINKVFIK  +  +FD+  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD KRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKY 1740
            SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSYNPQSAKY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1740

Query: 1741 SPSQAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPD 1800
            SPS AYSPS+ RLSP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY++G SPD
Sbjct: 1741 SPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD 1800

Query: 1801 YSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSEKDDR-----SRKDNRGN 1847
                   YSPSAGYSPT PGYSPSST QYTP   +K D+     + KD++GN
Sbjct: 1801 -------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGKKDASKDDKGN 1838

BLAST of Sed0006002 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 714.1 bits (1842), Expect = 2.8e-205
Identity = 495/1484 (33.36%), Postives = 742/1484 (50.00%), Query Frame = 0

Query: 14   KVRTVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKLKCETCTAN 73
            K++++ F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQAMR-IKNPK 133
               CPGH+G+L+L  P++++G+   +L I++C+C  CS +L+D++   ++  +R ++NP+
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK--LYEDHLRKMRNPR 141

Query: 134  NKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYIDGM--KMMAEY 193
             +  K  +  K   K     +      +     KK    CG      Y++GM  K+ A++
Sbjct: 142  MEPLKKTELAKAVVK-----KCSTMASQRIITCKK----CG------YLNGMVKKIAAQF 201

Query: 194  ----KAQRKK--NDEQEQMPEPVERKQTLTA-----------ERVLGVLKRISDDDCKLL 253
                   R K    E ++    +   +  TA             VLG+ KR+SD DC+LL
Sbjct: 202  GIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELL 261

Query: 254  GLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QE 313
             +     RP+ +I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +
Sbjct: 262  YI---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 321

Query: 314  RNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNL 373
               SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL
Sbjct: 322  PTSSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANL 381

Query: 374  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 433
             GKRV+F+ RTVI+PDP + I ++G+P  +A  LT+PE V+ +NIE+L++ V  GP+  P
Sbjct: 382  SGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYP 441

Query: 434  GKTGAKYIIRDDGQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 493
            G    +Y    DG    L   Y K+ +D  L +G  V+RHL +GD VLFNRQPSLH+MSI
Sbjct: 442  GARNVRY---PDGSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSI 501

Query: 494  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 553
            M HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V   + +P+
Sbjct: 502  MCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPK 561

Query: 554  ANRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAPAILKPQPLWT 613
                ++   QD L     IT++DTF  +  F  I  +  D    I  P P ILKP  LWT
Sbjct: 562  NGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWT 621

Query: 614  GKQVFNLIIPKQINLMRTSAWHV------ESETGF---ITPGDTFVRIEKGELLSGTLCK 673
            GKQ+F++++    ++      +V      + E GF   +   D +V     EL+SG L K
Sbjct: 622  GKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGK 681

Query: 674  KALGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEK 733
              LG  +   L  ++  +    AA   +     L   W+  + FSIGI D        ++
Sbjct: 682  ATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKE 741

Query: 734  INETISIAKNDVKTLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLS 793
              ++I    +     I++    +L+ + G     S E ++  +LN  R+  G +    L 
Sbjct: 742  RKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLH 801

Query: 794  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESRG 853
              N+   M   GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++G
Sbjct: 802  WRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKG 861

Query: 854  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 913
            FV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVRN
Sbjct: 862  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRN 921

Query: 914  SLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKNEFDRAFRYEFEDENWKPNYMLPEHVED 973
            + G ++QF YG+DGMD   +E +            D A                      
Sbjct: 922  ASGCILQFTYGDDGMDPALMEGK------------DGA---------------------- 981

Query: 974  LKTIREFRNVFEAEVQKLEADSIQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRR 1033
                                                   P+N  RL    Q T       
Sbjct: 982  ---------------------------------------PLNFNRLFLKVQATCP----P 1041

Query: 1034 ASDMHPMEIVEAIDKLQERLKVVPGEDALSVEAQKNATLFFNIL-LRSTFASKRVLDEYR 1093
             S    +   E   K +E L         +    K+   F ++L ++S    + +     
Sbjct: 1042 RSHHTYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASG 1101

Query: 1094 LTREAFEWVIGEIESRFLQSLVAPGEMIGCIAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1153
            +T +  E  +     R+ +  +  G  IG I AQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1102 VTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQ 1161

Query: 1154 GVPRLREIINVAKRIKTPSLSVYLKSDANKTKERAKTVQCALEYTTLRSVTQATEIWYDP 1213
            GVPR+ EIIN +K I TP +S  L++    T   A+ V+  +E TTL  V ++ E+    
Sbjct: 1162 GVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTS 1221

Query: 1214 DPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINL 1273
               S  I  D   +         E A   I+PW ++  + +   +           K+N 
Sbjct: 1222 TSASVRIILDNKII---------EEACLSITPWSVKNSILKTPRI-----------KLN- 1281

Query: 1274 EFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTDESAEDDVFLKKIASNMLTEMALRG 1333
              D+D                IR+++       + D+S     F      N+L  + + G
Sbjct: 1282 --DND----------------IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNIIVNG 1341

Query: 1334 IPDINKVFIKSGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEV 1393
            I  + +V +        DK +    + +W L  EG NLLAV+    ++ + TTSN+++EV
Sbjct: 1342 IKTVERVVVAE----DMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEV 1353

Query: 1394 IEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1453
             + LGIEA R +++DE+  V+   G  ++ RH+ +L D MTYRG ++ I R GI + D  
Sbjct: 1402 SKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKS 1353

Query: 1454 PMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1460
             +M+ SFE T D L  AA   + D++ GVTE +++G    +GTG
Sbjct: 1462 VLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1353

BLAST of Sed0006002 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 686.4 bits (1770), Expect = 6.3e-197
Identity = 491/1501 (32.71%), Postives = 735/1501 (48.97%), Query Frame = 0

Query: 14   KVRTVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKLKCETCTAN 73
            K++++ F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVC----------FNCSKILVDQEDPKFK 133
               CPGH+G+L+L  P++++G+   +L I++C+C            CS +L+D++   ++
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDEK--LYE 141

Query: 134  QAMR-IKNPKNKLRKILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYID 193
              +R ++NP+ +  K  +  K   K     +      +     KK    CG      Y++
Sbjct: 142  DHLRKMRNPRMEPLKKTELAKAVVK-----KCSTMASQRIITCKK----CG------YLN 201

Query: 194  GM--KMMAEY----KAQRKK--NDEQEQMPEPVERKQTLTA-----------ERVLGVLK 253
            GM  K+ A++       R K    E ++    +   +  TA             VLG+ K
Sbjct: 202  GMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFK 261

Query: 254  RISDDDCKLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRH 313
            R+SD DC+LL +     RP+ +I+  + +PP  +RPSVM+     +E+DLT +L  II  
Sbjct: 262  RMSDKDCELLYI---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILG 321

Query: 314  NENLRR--QERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLK 373
            N +L +   +   SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK
Sbjct: 322  NASLHKILSQPTSSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLK 381

Query: 374  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 433
             K GR R NL GKRV+F+ RTVI+PDP + I ++G+P  +A  LT+PE V+ +NIE+L++
Sbjct: 382  GKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQ 441

Query: 434  LVEYGPHPPPGKTGAKYIIRDDGQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFN 493
             V  GP+  PG    +Y    DG    L   Y K+ +D  L +G  V+RHL +GD VLFN
Sbjct: 442  CVRNGPNKYPGARNVRY---PDGSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFN 501

Query: 494  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 553
            RQPSLH+MSIM HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM
Sbjct: 502  RQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLM 561

Query: 554  MVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAP 613
             V   + +P+    ++   QD L     IT++DTF  +  F  I  +  D    I  P P
Sbjct: 562  GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTP 621

Query: 614  AILKPQPLWTGKQVFNLIIPKQINLMRTSAWHV------ESETGF---ITPGDTFVRIEK 673
             ILKP  LWTGKQ+F++++    ++      +V      + E GF   +   D +V    
Sbjct: 622  TILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRN 681

Query: 674  GELLSGTLCKKALGT--------STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 733
             EL+SG L K  L          +   L  ++  +    AA   +     L   W+  + 
Sbjct: 682  SELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHG 741

Query: 734  FSIGIGDTIADAATMEKINETISIAKNDVKTLIKKAQERSLEPEPGRTMMDSFENKVNQV 793
            FSIGI D        ++  ++I    +     I++    +L+ + G     S E ++  +
Sbjct: 742  FSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGI 801

Query: 794  LNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFID 853
            LN  R+  G +    L   N+   M   GSKGS INISQM ACVGQQ V G R P GFID
Sbjct: 802  LNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFID 861

Query: 854  RTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 913
            R+LPHF +    P ++GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL
Sbjct: 862  RSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRL 921

Query: 914  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKNEFDRAFRYEF 973
            +KA+ED++V YD TVRN+ G ++QF YG+DGMD   +E +            D A     
Sbjct: 922  MKALEDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGK------------DGA----- 981

Query: 974  EDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQLGTEIATTGENSWPMPVNL 1033
                                                                    P+N 
Sbjct: 982  --------------------------------------------------------PLNF 1041

Query: 1034 KRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDALSVEAQKNATLFFNI 1093
             RL    Q T        S    +   E   K +E L         +    K+   F ++
Sbjct: 1042 NRLFLKVQATCP----PRSHHTYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFVSL 1101

Query: 1094 L-LRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCIAAQSIGEPATQM 1153
            L ++S    + +     +T +  E  +     R+ +  +  G  IG I AQSIGEP TQM
Sbjct: 1102 LGVKSASPPQVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQM 1161

Query: 1154 TLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKSDANKTKERAKTVQCALE 1213
            TL TFH+AGV++ N+T GVPR+ EIIN +K I TP +S  L++    T   A+ V+  +E
Sbjct: 1162 TLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIE 1221

Query: 1214 YTTLRSVTQATEIWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREM 1273
             TTL  V ++ E+       S  I  D   +         E A   I+PW ++  + +  
Sbjct: 1222 KTTLGQVAESIEVLMTSTSASVRIILDNKII---------EEACLSITPWSVKNSILKTP 1281

Query: 1274 MVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEMTDESAEDDV 1333
             +           K+N   D+D                IR+++       + D+S     
Sbjct: 1282 RI-----------KLN---DND----------------IRVLDTGLDITPVVDKSRAH-- 1341

Query: 1334 FLKKIASNMLTEMALRGIPDINKVFIKSGKVIKFDKYEGFKPEMEWMLDTEGVNLLAVIC 1393
            F      N+L  + + GI  + +V +         K     P   W       NLLAV+ 
Sbjct: 1342 FNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKMLAKL--IIPCPRWAC----TNLLAVMG 1368

Query: 1394 HEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYR 1453
               ++ + TTSN+++EV + LGIEA R +++DE+  V+   G  ++ RH+ +L D MTYR
Sbjct: 1402 TPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYR 1368

Query: 1454 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGT 1460
            G ++ I R GI + D   +M+ SFE T D L  AA   + D++ GVTE +++G    +GT
Sbjct: 1462 GEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGT 1368

BLAST of Sed0006002 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 456.4 bits (1173), Expect = 1.1e-127
Identity = 457/1761 (25.95%), Postives = 721/1761 (40.94%), Query Frame = 0

Query: 3    LRFPYSPAEVAKVRTVQFGILSPDEIRQMSVVQIEHGETTER-GKPKVAGLSDPRLGTID 62
            L FP   ++V  V +V+F  ++  ++R+ S +++      +  G P   GL D +LG  D
Sbjct: 17   LLFPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKD 76

Query: 63   RKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKF 122
             K  C +C      CPGH GH+EL  P++H      +   ++  CF C   +   ED + 
Sbjct: 77   DKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVE- 136

Query: 123  KQAMRIK---------------NPKNKLRKILDACK------NKTKCEGGDEID-----V 182
            +   ++K               N   K +   ++C+      +  +CE  D  D     +
Sbjct: 137  RAVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSL 196

Query: 183  QGEESEQPVK-------KGPGGCGAQQPKI---------------------YIDGMKM-- 242
            Q  E    +K       K    C    PK+                      I G+K+  
Sbjct: 197  QFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKK 256

Query: 243  ------------------MAEY----KAQRKKNDEQEQMPEPVERKQTLTAERVLGVLKR 302
                              ++E     K  R+K+ E     E    K+ L    V  +LK 
Sbjct: 257  STSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKH 316

Query: 303  ISDDD---CKLLG----LNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 362
            +  ++   C  +G       +        L+ + +PP   RP       S  E   T  L
Sbjct: 317  LWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGL 376

Query: 363  AMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC 422
              +I  N  L     N      +    + LQ  +   FD++      AT +S R    IC
Sbjct: 377  NKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK-----TATVQSQRDSSGIC 436

Query: 423  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 482
              L+ KEG  R  +MGKRV+ + R+VI+PDP I ++ +G+P   AL LTYPE VTP+N+E
Sbjct: 437  QLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 496

Query: 483  RLKELVEYGPHPPPGKT-------GAKYIIRDDGQRLDLRYLKKSSDHHLEL-------- 542
            +L+E +  GP   PG T         K    +  +R   R L  S     EL        
Sbjct: 497  KLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINF 556

Query: 543  -GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDE 602
             G  V RH+ DGD VL NRQP+LHK S+M H+++++    T RL+ +  S YNADFDGDE
Sbjct: 557  EGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDE 616

Query: 603  MNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFITKDVF 662
            MN+H PQ   +RAE   ++        P    P+  ++QD ++    +TKRDTF+ KD F
Sbjct: 617  MNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHF 676

Query: 663  MNIL-------MWWEDFDGK---------------IPAPAILKPQPLWTGKQVFNLIIPK 722
              +L       M    F G+                  PAILKP PLWTGKQV   ++ +
Sbjct: 677  NQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQ 736

Query: 723  ----------------QINLMRTSAWHVESETGFITP------------GDTFVRIEKGE 782
                             ++  +  +  V+  +G +T              +  + I K E
Sbjct: 737  ITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNE 796

Query: 783  LLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI- 842
             + G + K     +   L+H + E  G +AA   L     L   +L  + F+ G+ D I 
Sbjct: 797  FVCGVIDKAQF--ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII 856

Query: 843  ---ADAATMEKINETISIAKNDVKTLIKKAQERSLEPEPGRTMMD--------------- 902
                D    +++ E  ++ +  ++       +  ++P+  R+ ++               
Sbjct: 857  LKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD 916

Query: 903  -SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 962
             S  N +NQ  +K   +D  S         N +  M  +G+KGS +N  Q+++ +GQQ++
Sbjct: 917  RSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDL 976

Query: 963  EGKRIPFGFIDRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 1022
            EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVK
Sbjct: 977  EGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1036

Query: 1023 TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK 1082
            TS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D                
Sbjct: 1037 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDV--------------- 1096

Query: 1083 NEFDRAFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADSIQLGTEIATT 1142
                 +F  +F++     + +L +  ED+                              +
Sbjct: 1097 --HRSSFIEKFKELTINQDMVLQKCSEDM-----------------------------LS 1156

Query: 1143 GENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDALS 1202
            G +S+   +P++LK+    A+K                 VEA+  + ER+          
Sbjct: 1157 GASSYISDLPISLKK---GAEK----------------FVEAM-PMNERI---------- 1216

Query: 1203 VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCI 1262
                               ASK V  E  L           ++S+F  SL  PGE +G +
Sbjct: 1217 -------------------ASKFVRQEELLKL---------VKSKFFASLAQPGEPVGVL 1276

Query: 1263 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKTPSLSVYLKSDANK 1322
            AAQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKTP ++  L     K
Sbjct: 1277 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLK--GK 1336

Query: 1323 TKERAKTVQCALEYTTLRSVTQATEIWYDP-----DPMSTIIEEDIDFVKSYYEMPDEEI 1382
            TKE A  +   L   T+  + ++ E+   P     + + +I +  I+  K  +     +I
Sbjct: 1337 TKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDI 1396

Query: 1383 APEKISPWLLRIELNR-EMMVDKKLSMANIAEKIN-----------LEFDDDLTCIFN-- 1442
              E     +  + L + E  ++  + M +    I+            + DD ++   N  
Sbjct: 1397 TEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNED 1456

Query: 1443 --DDNAEKLILRIRIMNDEAPKGEMTD-----ESAEDDVFLKKIAS----------NMLT 1460
              DD+ E   +     + +  K + TD     E++ED+       S          N  T
Sbjct: 1457 DGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDT 1516

BLAST of Sed0006002 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-52
Identity = 210/845 (24.85%), Postives = 366/845 (43.31%), Query Frame = 0

Query: 65  KCETCTANMAE-CPGHFGHLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDQEDPKFKQ 124
           KCE+C A   + C GHFG+++L  P++H   +  +  ++  +C  C KI           
Sbjct: 56  KCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI----------- 115

Query: 125 AMRIKNPKNKLR-KILDACKNKTKCEGGDEIDVQGEESEQPVKKGPGGCGAQQPKIYIDG 184
             + K     L  ++L  C     CE   +I ++   S+          GA     Y++ 
Sbjct: 116 -KKAKGTSGGLADRLLGVC-----CEEASQISIKDRASD----------GAS----YLE- 175

Query: 185 MKMMAEYKAQRKKNDEQEQMPEPVERKQT--LTAERVLGVLKRISDDDCKLLGLNPKFAR 244
           +K+ +  + Q    +  E+         T  L A  V  +L+RI ++  K L       +
Sbjct: 176 LKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIPEESRKKLTAKGHIPQ 235

Query: 245 PDWMILQVLPIPPPPVR-PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 304
             + IL+ LP+PP  +  P      S+ S D    +L  +++    ++      +     
Sbjct: 236 EGY-ILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESH 295

Query: 305 SEFAQLLQFHIATYFDNELPGLPRATQ----RSGRPIKSICSRLKAKEGRIRGNLMGKRV 364
              A  +   + TY   ++ G  +A +    R G    S  S  KA   ++R   + K  
Sbjct: 296 KAEASEMFRVVDTYL--QVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGS 355

Query: 365 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 424
            FS+R+VIT D   +++++G+P  IA  +T+ E V+ +N   L++LV+        +   
Sbjct: 356 GFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQGST 415

Query: 425 KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 484
            Y +RD             S  H EL  G  V R + DGD V  NR P+ HK S+   R+
Sbjct: 416 TYSLRD------------GSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV 475

Query: 485 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPV 544
            +   +T ++N  + SP +ADFDGD +++  PQS   +AEV+EL  V K ++S    + +
Sbjct: 476 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 535

Query: 545 MGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQ---PLWTGKQV 604
           + +  D+LL  R + +R  F+ K     + M+       +P PA+ K     P WT  Q+
Sbjct: 536 LQMGSDSLLSLRVMLER-VFLDKATAQQLAMYG---SLSLPPPALRKSSKSGPAWTVFQI 595

Query: 605 FNLIIPKQINLMRTSAWHVESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHV 664
             L  P++++                  GD F+ ++  +LL       A+G+    ++  
Sbjct: 596 LQLAFPERLS----------------CKGDRFL-VDGSDLLKFDFGVDAMGSIINEIVTS 655

Query: 665 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISIAKNDVKT 724
           I+ E GP     F    Q L+   L    FS+ + D     A M+ I+  I         
Sbjct: 656 IFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLII-------- 715

Query: 725 LIKKAQERSLEPEPGRTMMD-SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGS 784
                  R + P   R  +    E ++   ++K ++ A +   KS S    ++ ++   S
Sbjct: 716 -------REISPMVSRLRLSYRDELQLENSIHKVKEVAANFMLKSYS----IRNLIDIKS 775

Query: 785 KGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDFGPESR----GFVENSYLRG 844
             +   + Q T  +G Q  + K+     +   +  F K  +G  S     G V+  +  G
Sbjct: 776 NSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGCFFHG 813

Query: 845 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQF 890
           L P E   H++  RE ++ ++   +E G + + L+  + DI++  DGTVRN+  + VIQF
Sbjct: 836 LDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQF 813