Sed0005960 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGGTACGCTCCCACCAACCACTAATCACTTTACTATAAACTTAACCCAATTCATATCATCTCCACTTAGTTTATATTTATAATTCAGATTTTAGCTATTCATTTAATTAATTTTACAGTTATTTGGTCAATCAGAGCAATAACTCAACAACCTCTATATATATCTGATGATCAAGAGGTCACGCGTTTGAATTTTCCTCTCCTAATTGTTGTAACTAAAAAAAAACTTTACAATTTATTTCTAGTGATCATTATTACATAGCTAATTTATTCCACTAACTCCACTTCTAAAATAAATAATATATATATTTTTATTACCTTTAAGTTTTATAGACAGTAATATCTAAAAAATCAAATAGCTATTAAGAGAATTACTATATACATTTTTTTGCCAATCTTATACAATCTAATAACTAAAGATATATGTGTAATAAGTATGAGGACAAGGAATGACTTCTCTATTTCTGTCTCTCAAATACACAATTTTTATTTTTGCAAAATTTATGATTTTTTCGCACCATCAATTTTTTTAGATGAATTTTTCTTCATTTTTTATAATTAATATTAATTTTTAAACATTTTTTTAAAAAAATCTAAAATTAAATTTATAAGACTAAGAAAAAAAATGTAAACATAGCTAGAAGGAAACAGATATGGATAATACAATACCGATCCCCATTTAAGTTTTGAGTTCAACTAGTGAAAGATTTTTTTTTCTTTTGAAATACTAGTGCAAAATATTTAAATTTATGATTTCTTGATTTTTAATTATACACTAATGATAAATATAATAATACTTTCTATATCTTTATGACCTCGTTTGATAATTATTTGATTTTTGTTTTTTATGTTAATATACATGAATTACTTCGCCCAGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA MGGCLALGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSEETTVRVSRRIMTVKPTGYQYGCLLLFPVVST Homology
BLAST of Sed0005960 vs. NCBI nr
Match: XP_038878371.1 (dormancy-associated protein homolog 3-like isoform X1 [Benincasa hispida]) HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18 Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Sed0005960 vs. NCBI nr
Match: XP_038878372.1 (dormancy-associated protein homolog 3-like isoform X2 [Benincasa hispida]) HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18 Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Sed0005960 vs. NCBI nr
Match: XP_022925438.1 (dormancy-associated protein homolog 3-like isoform X1 [Cucurbita moschata] >KAG6588486.1 Dormancy-associated protein-like 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of Sed0005960 vs. NCBI nr
Match: XP_022925449.1 (dormancy-associated protein homolog 3-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of Sed0005960 vs. NCBI nr
Match: KAG7022316.1 (Dormancy-associated protein-like 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy Swiss-Prot
Match: Q8LD26 (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05 Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1EC77 (dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432734 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1EF66 (dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432734 PE=3 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18 Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1HZS2 (dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469111 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18 Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1I2Y2 (dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469111 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18 Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0
BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A0A0LWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569400 PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17 Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0
BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.1 (Dormancy/auxin associated family protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.2 (Dormancy/auxin associated family protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.3 (Dormancy/auxin associated family protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.4 (Dormancy/auxin associated family protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0
BLAST of Sed0005960 vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein ) HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06 Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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