Sed0005960 (gene) Chayote v1

Overview
NameSed0005960
Typegene
OrganismSechium edule (Chayote v1)
Descriptiondormancy-associated protein homolog 3-like isoform X2
LocationLG04: 3503012 .. 3504155 (-)
RNA-Seq ExpressionSed0005960
SyntenySed0005960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGGTACGCTCCCACCAACCACTAATCACTTTACTATAAACTTAACCCAATTCATATCATCTCCACTTAGTTTATATTTATAATTCAGATTTTAGCTATTCATTTAATTAATTTTACAGTTATTTGGTCAATCAGAGCAATAACTCAACAACCTCTATATATATCTGATGATCAAGAGGTCACGCGTTTGAATTTTCCTCTCCTAATTGTTGTAACTAAAAAAAAACTTTACAATTTATTTCTAGTGATCATTATTACATAGCTAATTTATTCCACTAACTCCACTTCTAAAATAAATAATATATATATTTTTATTACCTTTAAGTTTTATAGACAGTAATATCTAAAAAATCAAATAGCTATTAAGAGAATTACTATATACATTTTTTTGCCAATCTTATACAATCTAATAACTAAAGATATATGTGTAATAAGTATGAGGACAAGGAATGACTTCTCTATTTCTGTCTCTCAAATACACAATTTTTATTTTTGCAAAATTTATGATTTTTTCGCACCATCAATTTTTTTAGATGAATTTTTCTTCATTTTTTATAATTAATATTAATTTTTAAACATTTTTTTAAAAAAATCTAAAATTAAATTTATAAGACTAAGAAAAAAAATGTAAACATAGCTAGAAGGAAACAGATATGGATAATACAATACCGATCCCCATTTAAGTTTTGAGTTCAACTAGTGAAAGATTTTTTTTTCTTTTGAAATACTAGTGCAAAATATTTAAATTTATGATTTCTTGATTTTTAATTATACACTAATGATAAATATAATAATACTTTCTATATCTTTATGACCTCGTTTGATAATTATTTGATTTTTGTTTTTTATGTTAATATACATGAATTACTTCGCCCAGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA

mRNA sequence

ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA

Coding sequence (CDS)

ATGGGCGGTTGTTTGGCGCTGGGGCTACTCGACCAGCTTTGGGACGACACGCTTGCCGGACCGGCACCCGACTCCGGTCTCGGCAAGCTCCTCAAGCATCCTGCGGCCTTCACTTCCAAGGAGTCGAACAATAAGAGTTACGAGGAAGGAACAGCGGAATCGCCGCCGTCGGAGGAGACGACGGTAAGAGTTTCGAGAAGGATTATGACGGTAAAGCCAACGGGATACCAGTATGGCTGCCTTCTCCTTTTTCCGGTAGTTTCCACGTGA

Protein sequence

MGGCLALGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSEETTVRVSRRIMTVKPTGYQYGCLLLFPVVST
Homology
BLAST of Sed0005960 vs. NCBI nr
Match: XP_038878371.1 (dormancy-associated protein homolog 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPA----AFTSKESNNKSYEEGTAESPPSEETTV 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP     + + KESN KSYEEGT     S E  V
Sbjct: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPTFASRSASPKESNGKSYEEGTT----SSEEAV 60

Query: 67 RVSRRIMTVKPTGYQYGCLLLFPVVST 90
          RVSRRIM VKP GYQYG   + P  S+
Sbjct: 61 RVSRRIMIVKPPGYQYGSPPVSPAASS 83

BLAST of Sed0005960 vs. NCBI nr
Match: XP_038878372.1 (dormancy-associated protein homolog 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPA----AFTSKESNNKSYEEGTAESPPSEETTV 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP     + + KESN KSYEEGT     S E  V
Sbjct: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPTFASRSASPKESNGKSYEEGTT----SSEEAV 60

Query: 67 RVSRRIMTVKPTGYQYGCLLLFPVVST 90
          RVSRRIM VKP GYQYG   + P  S+
Sbjct: 61 RVSRRIMIVKPPGYQYGSPPVSPAASS 83

BLAST of Sed0005960 vs. NCBI nr
Match: XP_022925438.1 (dormancy-associated protein homolog 3-like isoform X1 [Cucurbita moschata] >KAG6588486.1 Dormancy-associated protein-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSSEEP 60

Query: 67 VRVSRRIMTVKPTGYQYGCLLLFPVVST 90
          ++VSRRIM VKP GYQYG   + P  S+
Sbjct: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSS 85

BLAST of Sed0005960 vs. NCBI nr
Match: XP_022925449.1 (dormancy-associated protein homolog 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSSEEP 60

Query: 67 VRVSRRIMTVKPTGYQYGCLLLFPVVST 90
          ++VSRRIM VKP GYQYG   + P  S+
Sbjct: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSS 85

BLAST of Sed0005960 vs. NCBI nr
Match: KAG7022316.1 (Dormancy-associated protein-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSSEEP 60

Query: 67 VRVSRRIMTVKPTGYQYGCLLLFPVVST 90
          ++VSRRIM VKP GYQYG   + P  S+
Sbjct: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSS 85

BLAST of Sed0005960 vs. ExPASy Swiss-Prot
Match: Q8LD26 (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSE---ETTVR 66
          +GLLD LWDDT+AGP P++GLGKL KH        S N   E G+A S   +   E  V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 67 VSRRIMTVKPTGYQYGCLLLFPVVST 90
          V+R IM +KP GYQ       P  ST
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGST 86

BLAST of Sed0005960 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSEETTVRVSR 66
          +G L +LWD+T+AGP PD+GLGKL KH +  T +             SPPS  +  +V+R
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVR------------SSPPSLSSD-QVTR 53

Query: 67 RIMTVK 73
           IM  K
Sbjct: 61 SIMVTK 53

BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1EC77 (dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432734 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSSEEP 60

Query: 67 VRVSRRIMTVKPTGYQYGCLLLFPVVST 90
          ++VSRRIM VKP GYQYG   + P  S+
Sbjct: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSS 85

BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1EF66 (dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432734 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 58/88 (65.91%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSSEEP 60

Query: 67 VRVSRRIMTVKPTGYQYGCLLLFPVVST 90
          ++VSRRIM VKP GYQYG   + P  S+
Sbjct: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSS 85

BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1HZS2 (dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469111 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSTEEP 60

Query: 67 VRVSRRIMTVKPTGYQYG 80
          ++VSRRIM VKP GYQYG
Sbjct: 61 LKVSRRIMIVKPPGYQYG 75

BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A6J1I2Y2 (dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469111 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTS-----KESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP +FTS     KESN KSYEEGT   P S E  
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP-SFTSRSTAVKESNGKSYEEGT--PPSSTEEP 60

Query: 67 VRVSRRIMTVKPTGYQYG 80
          ++VSRRIM VKP GYQYG
Sbjct: 61 LKVSRRIMIVKPPGYQYG 75

BLAST of Sed0005960 vs. ExPASy TrEMBL
Match: A0A0A0LWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569400 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 53/89 (59.55%), Postives = 60/89 (67.42%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHP-----AAFTSKESNNKSYEEGTAESPPSEETT 66
          +GLLDQLWDDTLAGP PDSGLGKL KHP     +A   + SN K YEEG   S  S E +
Sbjct: 1  MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 67 VRVSRRIMTVKPT-GYQYGCLLLFPVVST 90
          V+VSRRIM VKP  GYQYG   + P  S+
Sbjct: 61 VKVSRRIMIVKPPGGYQYGSPPVSPAASS 89

BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSE---ETTVR 66
          +GLLD LWDDT+AGP P++GLGKL KH        S N   E G+A S   +   E  V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 67 VSRRIMTVKPTGYQYGCLLLFPVVST 90
          V+R IM +KP GYQ       P  ST
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGST 86

BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.2 (Dormancy/auxin associated family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSE---ETTVR 66
          +GLLD LWDDT+AGP P++GLGKL KH        S N   E G+A S   +   E  V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 67 VSRRIMTVKPTGYQYGCLLLFPVVST 90
          V+R IM +KP GYQ       P  ST
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGST 86

BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.3 (Dormancy/auxin associated family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSE---ETTVR 66
          +GLLD LWDDT+AGP P++GLGKL KH        S N   E G+A S   +   E  V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 67 VSRRIMTVKPTGYQYGCLLLFPVVST 90
          V+R IM +KP GYQ       P  ST
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGST 86

BLAST of Sed0005960 vs. TAIR 10
Match: AT1G56220.4 (Dormancy/auxin associated family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSE---ETTVR 66
          +GLLD LWDDT+AGP P++GLGKL KH        S N   E G+A S   +   E  V+
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVK 60

Query: 67 VSRRIMTVKPTGYQYGCLLLFPVVST 90
          V+R IM +KP GYQ       P  ST
Sbjct: 61 VTRSIMIIKPPGYQGSSAPASPAGST 86

BLAST of Sed0005960 vs. TAIR 10
Match: AT1G54070.1 (Dormancy/auxin associated family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0

Query: 7  LGLLDQLWDDTLAGPAPDSGLGKLLKHPAAFTSKESNNKSYEEGTAESPPSEETTVRVSR 66
          +G L +LWD+T+AGP PD+GLGKL KH +  T +             SPPS  +  +V+R
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVR------------SSPPSLSSD-QVTR 53

Query: 67 RIMTVK 73
           IM  K
Sbjct: 61 SIMVTK 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878371.12.0e-1864.37dormancy-associated protein homolog 3-like isoform X1 [Benincasa hispida][more]
XP_038878372.12.0e-1864.37dormancy-associated protein homolog 3-like isoform X2 [Benincasa hispida][more]
XP_022925438.12.6e-1865.91dormancy-associated protein homolog 3-like isoform X1 [Cucurbita moschata] >KAG6... [more]
XP_022925449.12.6e-1865.91dormancy-associated protein homolog 3-like isoform X2 [Cucurbita moschata][more]
KAG7022316.12.6e-1865.91Dormancy-associated protein-like 3 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q8LD261.4e-1146.51Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g562... [more]
F4HV653.4e-0542.42Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540... [more]
Match NameE-valueIdentityDescription
A0A6J1EC771.3e-1865.91dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita moschata OX=3... [more]
A0A6J1EF661.3e-1865.91dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A6J1HZS21.7e-1871.79dormancy-associated protein homolog 3-like isoform X2 OS=Cucurbita maxima OX=366... [more]
A0A6J1I2Y21.7e-1871.79dormancy-associated protein homolog 3-like isoform X1 OS=Cucurbita maxima OX=366... [more]
A0A0A0LWE49.1e-1759.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569400 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G56220.11.0e-1246.51Dormancy/auxin associated family protein [more]
AT1G56220.21.0e-1246.51Dormancy/auxin associated family protein [more]
AT1G56220.31.0e-1246.51Dormancy/auxin associated family protein [more]
AT1G56220.41.0e-1246.51Dormancy/auxin associated family protein [more]
AT1G54070.12.4e-0642.42Dormancy/auxin associated family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008406Dormancy/auxin associated proteinPFAMPF05564Auxin_repressedcoord: 13..52
e-value: 3.5E-6
score: 27.7
IPR008406Dormancy/auxin associated proteinPANTHERPTHR33565DORMANCY-ASSOCIATED PROTEIN 1coord: 7..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..62
NoneNo IPR availablePANTHERPTHR33565:SF1DORMANCY-ASSOCIATED PROTEIN HOMOLOG 3coord: 7..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005960.1Sed0005960.1mRNA