Sed0005907 (gene) Chayote v1

Overview


Name	Sed0005907
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GPN-loop GTPase 1
Location	LG03: 43474566 .. 43475137 (+)
RNA-Seq Expression	Sed0005907
Synteny	Sed0005907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAAAACAATTTGTTGCATGCAGTGGATGGAAGACTTCGAAGCATTGCTGCAGTTCGGATAGTTCTTCTTACACCTCAACAGTAAGCTATCTCTCTCGGGGCTGAATGAGTTAGATAAGAACTTGGAATCTGTTGGAGTATTTGCAGTTTCCGGAGTGGATTCTTTCTTTAAAGCAATCGAATCAAGGGCCGAGGAGTGCATGGGAAACTATAAGTAATGAGAGCAAATAAACAAATCTATTCGATCGAGGTAGCGATCTTGGGTTCGATATTTATACTACTTTTGGCTTTCGTTTCAGGGCCGAGATTGACAAGAGGATTTTCGAGAAGCAGCAGTTGGGAGAAGAGCGCGGACGGGAAAACGTGGAGAAGTTAAGGAAAGATATGGAGAGCTCGAAGGGACAACCTGTGGTTTTGAGCACCAGTTTGAAGGATGACAAGAGTAAAACTAAGATGGTCAATAGTGAAAATGAAGAGATAGAAGAGGAAGATGAGGACGATGATTACAGCAGATTGATGATTGAATATGAGGATGAAGATGATGAGGTTGCAAGATTCTCCTTTTAG

mRNA sequence

ATGTTAAAAAACAATTTGTTGCATGCAGTGGATGGAAGACTTCGAAGCATTGCTGCAGTTCGGATAGTTCTTCTTACACCTCAACAGGCCGAGATTGACAAGAGGATTTTCGAGAAGCAGCAGTTGGGAGAAGAGCGCGGACGGGAAAACGTGGAGAAGTTAAGGAAAGATATGGAGAGCTCGAAGGGACAACCTGTGGTTTTGAGCACCAGTTTGAAGGATGACAAGAGTAAAACTAAGATGGTCAATAGTGAAAATGAAGAGATAGAAGAGGAAGATGAGGACGATGATTACAGCAGATTGATGATTGAATATGAGGATGAAGATGATGAGGTTGCAAGATTCTCCTTTTAG

Coding sequence (CDS)

ATGTTAAAAAACAATTTGTTGCATGCAGTGGATGGAAGACTTCGAAGCATTGCTGCAGTTCGGATAGTTCTTCTTACACCTCAACAGGCCGAGATTGACAAGAGGATTTTCGAGAAGCAGCAGTTGGGAGAAGAGCGCGGACGGGAAAACGTGGAGAAGTTAAGGAAAGATATGGAGAGCTCGAAGGGACAACCTGTGGTTTTGAGCACCAGTTTGAAGGATGACAAGAGTAAAACTAAGATGGTCAATAGTGAAAATGAAGAGATAGAAGAGGAAGATGAGGACGATGATTACAGCAGATTGATGATTGAATATGAGGATGAAGATGATGAGGTTGCAAGATTCTCCTTTTAG

Protein sequence

MLKNNLLHAVDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEEIEEEDEDDDYSRLMIEYEDEDDEVARFSF

Homology

[Close]

BLAST of Sed0005907 vs. NCBI nr
Match: XP_023546615.1 (GPN-loop GTPase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKRI EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDKSKTKMV+ E+EE
Sbjct: 313 KAELDKRIAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDDEDEE 372

Query: 89  IEEEDEDD-DYSRLMIE----YEDEDDEVARFSF 118
           I+EE+EDD DY+R   E     EDED+EVARFSF
Sbjct: 373 IDEENEDDYDYNRSTEEDDPIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. NCBI nr
Match: XP_038890581.1 (GPN-loop GTPase QQT2 [Benincasa hispida] >XP_038890582.1 GPN-loop GTPase QQT2 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 65/94 (69.15%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKR+ EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDK+KTK+V++++EE
Sbjct: 313 KAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKNKTKIVDNDDEE 372

Query: 89  IEEEDE-DDDYSRLMIE----YEDEDDEVARFSF 118
           I+EEDE DDDY R   E     EDED+EVARFSF
Sbjct: 373 IDEEDEDDDDYERFTEEDDAIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. NCBI nr
Match: XP_022997330.1 (GPN-loop GTPase 1-like [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKRI EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDD+SKTKMV+ E+EE
Sbjct: 313 KAELDKRIAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDDEDEE 372

Query: 89  IEEEDEDD-DYSRLMIE----YEDEDDEVARFSF 118
           I+EE+EDD DY+R   E     EDED+EVARFSF
Sbjct: 373 IDEENEDDYDYNRSTEEDDPIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. NCBI nr
Match: XP_008441779.1 (PREDICTED: GPN-loop GTPase 1 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKR+ EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDKSKTKMV++++ E
Sbjct: 313 KAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDNDDVE 372

Query: 89  IEEEDE-DDDYSRLMIE----YEDEDDEVARFSF 118
           I+EEDE DDDY R   E     EDED+EVARFSF
Sbjct: 373 IDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. NCBI nr
Match: XP_022929726.1 (GPN-loop GTPase 1-like [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKRI EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDKSKTKMV+ E+EE
Sbjct: 313 KAELDKRIAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDDEDEE 372

Query: 89  IEEEDEDD-DYSRLMIE----YEDEDDEVARFSF 118
           I+EE+EDD DY+R   E     EDED+EV RFSF
Sbjct: 373 IDEENEDDYDYNRSTEEDDPIDEDEDEEVVRFSF 406

[Close]

BLAST of Sed0005907 vs. ExPASy Swiss-Prot
Match: Q8W586 (GPN-loop GTPase QQT2 OS=Arabidopsis thaliana OX=3702 GN=QQT2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 10  VDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLS 69
           +DG  ++I A     +   +A++D R  +K++L EER +  +EKLRKDMESS+G  VVL+
Sbjct: 273 MDGFFKAIEASAEEYMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLN 332

Query: 70  TSLKDDKSKTKMVNSENEE---IEEEDEDDDYSRLMIEYEDEDDEVARF 116
           T LKD  +  KM+  E++E   +E+E++ DD     I+ +DEDDE   +
Sbjct: 333 TGLKDRDATEKMMLEEDDEDFQVEDEEDSDD----AIDEDDEDDETKHY 377

[Close]

BLAST of Sed0005907 vs. ExPASy TrEMBL
Match: A0A6J1K9A8 (GPN-loop GTPase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492273 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKRI EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDD+SKTKMV+ E+EE
Sbjct: 313 KAELDKRIAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDDEDEE 372

Query: 89  IEEEDEDD-DYSRLMIE----YEDEDDEVARFSF 118
           I+EE+EDD DY+R   E     EDED+EVARFSF
Sbjct: 373 IDEENEDDYDYNRSTEEDDPIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. ExPASy TrEMBL
Match: A0A6J1ENZ1 (GPN-loop GTPase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436225 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKRI EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDKSKTKMV+ E+EE
Sbjct: 313 KAELDKRIAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDDEDEE 372

Query: 89  IEEEDEDD-DYSRLMIE----YEDEDDEVARFSF 118
           I+EE+EDD DY+R   E     EDED+EV RFSF
Sbjct: 373 IDEENEDDYDYNRSTEEDDPIDEDEDEEVVRFSF 406

[Close]

BLAST of Sed0005907 vs. ExPASy TrEMBL
Match: A0A1S3B4V8 (GPN-loop GTPase 1 OS=Cucumis melo OX=3656 GN=LOC103485838 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 0


Query: 29  QAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLSTSLKDDKSKTKMVNSENEE 88
           +AE+DKR+ EKQ+L EER REN+EKLR+DMESSKGQ VVLST LKDDKSKTKMV++++ E
Sbjct: 313 KAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDNDDVE 372

Query: 89  IEEEDE-DDDYSRLMIE----YEDEDDEVARFSF 118
           I+EEDE DDDY R   E     EDED+EVARFSF
Sbjct: 373 IDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. ExPASy TrEMBL
Match: A0A6J1FI60 (GPN-loop GTPase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444163 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 10  VDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLS 69
           VD   ++I +     +   +AE+DKRI EKQ+L EER REN+EKLRKDMESS+GQ VVLS
Sbjct: 296 VDSFFKAIESSAEEYMENYKAELDKRIAEKQRLEEERKRENMEKLRKDMESSRGQTVVLS 355

Query: 70  TSLKDDKSKTKMVNSENEEIEEEDEDDDYSRLMIEY----EDEDDEVARFSF 118
           T LKD+K+KTKMV +E+EEI +ED DDDY R   E     ED+D+EVARFSF
Sbjct: 356 TGLKDEKTKTKMVENEDEEIVDED-DDDYDRFTEEEDVIDEDDDEEVARFSF 406

[Close]

BLAST of Sed0005907 vs. ExPASy TrEMBL
Match: A0A6J1HRW8 (GPN-loop GTPase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465564 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.7e-19
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 10  VDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLS 69
           VD   ++I +     +   +AE+DKRI EKQ+L EER REN+EKLRKDMESS+GQ VVLS
Sbjct: 296 VDSFFKAIESSAEEYMENYKAELDKRIAEKQRLEEERKRENMEKLRKDMESSRGQTVVLS 355

Query: 70  TSLKDDKSKTKMVNSENEEIEEEDEDDDYSRLMIEY----EDEDDEVARFSF 118
           T LKD+KSKTKMV +E+EEI +ED DDDY R   E     ED+D+EV RFSF
Sbjct: 356 TGLKDEKSKTKMVENEDEEIVDED-DDDYDRFTEEEDVIDEDDDEEVTRFSF 406

[Close]

BLAST of Sed0005907 vs. TAIR 10
Match: AT4G21800.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 10  VDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLS 69
           +DG  ++I A     +   +A++D R  +K++L EER +  +EKLRKDMESS+G  VVL+
Sbjct: 273 MDGFFKAIEASAEEYMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLN 332

Query: 70  TSLKDDKSKTKMVNSENEE---IEEEDEDDDYSRLMIEYEDEDDEVARF 116
           T LKD  +  KM+  E++E   +E+E++ DD     I+ +DEDDE   +
Sbjct: 333 TGLKDRDATEKMMLEEDDEDFQVEDEEDSDD----AIDEDDEDDETKHY 377

[Close]

BLAST of Sed0005907 vs. TAIR 10
Match: AT4G21800.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 10  VDGRLRSIAAVRIVLLTPQQAEIDKRIFEKQQLGEERGRENVEKLRKDMESSKGQPVVLS 69
           +DG  ++I A     +   +A++D R  +K++L EER +  +EKLRKDMESS+G  VVL+
Sbjct: 273 MDGFFKAIEASAEEYMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLN 332

Query: 70  TSLKDDKSKTKMVNSENEE---IEEEDEDDDYSRLMIEYEDEDDEVARF 116
           T LKD  +  KM+  E++E   +E+E++ DD     I+ +DEDDE   +
Sbjct: 333 TGLKDRDATEKMMLEEDDEDFQVEDEEDSDD----AIDEDDEDDETKHY 377

The following BLAST results are available for this feature:

BLAST of Sed0005907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546615.1	1.1e-19	72.34	GPN-loop GTPase 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038890581.1	3.1e-19	69.15	GPN-loop GTPase QQT2 [Benincasa hispida] >XP_038890582.1 GPN-loop GTPase QQT2 [B...	[more]
XP_022997330.1	3.1e-19	71.28	GPN-loop GTPase 1-like [Cucurbita maxima]	[more]
XP_008441779.1	3.1e-19	70.21	PREDICTED: GPN-loop GTPase 1 [Cucumis melo]	[more]
XP_022929726.1	3.1e-19	71.28	GPN-loop GTPase 1-like [Cucurbita moschata]	[more]

BLAST of Sed0005907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W586	1.1e-08	40.37	GPN-loop GTPase QQT2 OS=Arabidopsis thaliana OX=3702 GN=QQT2 PE=1 SV=1	[more]

BLAST of Sed0005907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9A8	1.5e-19	71.28	GPN-loop GTPase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111492273 PE=3 SV=1	[more]
A0A6J1ENZ1	1.5e-19	71.28	GPN-loop GTPase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111436225 PE=3 SV=1	[more]
A0A1S3B4V8	1.5e-19	70.21	GPN-loop GTPase 1 OS=Cucumis melo OX=3656 GN=LOC103485838 PE=3 SV=1	[more]
A0A6J1FI60	7.5e-19	59.82	GPN-loop GTPase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444163 PE=3 SV=1	[more]
A0A6J1HRW8	9.7e-19	59.82	GPN-loop GTPase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465564 PE=3 SV=1	[more]

BLAST of Sed0005907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21800.1	8.2e-10	40.37	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G21800.2	8.2e-10	40.37	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..97
None	No IPR available	PANTHER	PTHR21231:SF9	GPN-LOOP GTPASE	coord: 17..111
IPR004130	GPN-loop GTPase	PANTHER	PTHR21231	XPA-BINDING PROTEIN 1-RELATED	coord: 17..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005907.1	Sed0005907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding