Sed0005859 (gene) Chayote v1

Overview


Name	Sed0005859
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cytochrome P450 like_TBP
Location	LG06: 22358876 .. 22359124 (+)
RNA-Seq Expression	Sed0005859
Synteny	Sed0005859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAATGTAGGCAAGGGAAGTCGGTAAAATGGATCCGTAACCACGGAAAAGGATTGGCTCGAGGGTGGGCACGGGGTCCCGATTCCAAACCCGTCATTTGTCGATGGATCGCTCGAGCCGCTCTGGCGCGAGCGGGTCGCCAGCGTCTTGCCCGGACGGACTGAGAACGGCTCCTTCGGGGCCTTCCGGGCGTCGAGCGATCGGCTCAGAATCGTAATGCGGACAAGGGGAATCCGATTGCTTAA

mRNA sequence

ATGGAACAATGTAGGCAAGGGAAGTCGGTAAAATGGATCCGTAACCACGGAAAAGGATTGGCTCGAGGGTGGGCACGGGGTCCCGATTCCAAACCCGTCATTTGTCGATGGATCGCTCGAGCCGCTCTGGCGCGAGCGGAACGGCTCCTTCGGGGCCTTCCGGGCGTCGAGCGATCGGCTCAGAATCGTAATGCGGACAAGGGGAATCCGATTGCTTAA

Coding sequence (CDS)

ATGGAACAATGTAGGCAAGGGAAGTCGGTAAAATGGATCCGTAACCACGGAAAAGGATTGGCTCGAGGGTGGGCACGGGGTCCCGATTCCAAACCCGTCATTTGTCGATGGATCGCTCGAGCCGCTCTGGCGCGAGCGGAACGGCTCCTTCGGGGCCTTCCGGGCGTCGAGCGATCGGCTCAGAATCGTAATGCGGACAAGGGGAATCCGATTGCTTAA

Protein sequence

MEQCRQGKSVKWIRNHGKGLARGWARGPDSKPVICRWIARAALARAERLLRGLPGVERSAQNRNADKGNPIA

Homology

[Close]

BLAST of Sed0005859 vs. NCBI nr
Match: KAF1856207.1 (hypothetical protein Lal_00046809 [Lupinus albus])

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAAL-ARAERLL-------- 60
          MEQCRQGKS KWIRN GK + + GWARGP  +PV CRW ARAAL ARA R +        
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGPSPEPVGCRWTARAALAARAGRRVPVGGRIGN 60

Query: 61 ----RGLPGVERSAQN 63
                 PGVE+S QN
Sbjct: 61 GPFGASSPGVEQSTQN 76

[Close]

BLAST of Sed0005859 vs. NCBI nr
Match: KAF7801192.1 (hypothetical protein G2W53_044871 [Senna tora])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 44/87 (50.57%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAA-LARAERLLRG------ 60
          MEQCRQGKS KWIRN GK + + GWARG   +PV CRW ARAA  ARA R +        
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSSPEPVGCRWTARAAPAARAGRRVPAGGRTGN 60

Query: 61 ------LPGVERSAQN-RNADKGNPIA 73
                 PGVE+S QN     KG  +A
Sbjct: 61 GPFGVPSPGVEQSTQNCETTAKGTGLA 87

[Close]

BLAST of Sed0005859 vs. NCBI nr
Match: KRH17737.1 (hypothetical protein GLYMA_13G011200v4 [Glycine max])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAALARAERLL 51
          MEQCRQGKS KWIRN GK + + GWARGP  +PV CRW ARAA  R ER++
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGPSPEPVGCRWTARAA-PRRERVV 50

[Close]

BLAST of Sed0005859 vs. NCBI nr
Match: KAG9438641.1 (hypothetical protein H6P81_021417 [Aristolochia fimbriata])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 31/42 (73.81%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1   MEQCRQGKSVKWIRNHGKGLARGWARGPDSKPVICRWIARAA 43
           MEQCRQGKS KWIRN GKGLARG   G   +PV CRW ARAA
Sbjct: 330 MEQCRQGKSAKWIRNRGKGLARGAGHGVPVEPVGCRWTARAA 371

[Close]

BLAST of Sed0005859 vs. NCBI nr
Match: KAG9444709.1 (hypothetical protein H6P81_016049 [Aristolochia fimbriata])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 37/77 (48.05%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 5   RQGKSVKWIRNHGKGLARGWARGPDSKPVICRWIARAALARAE----RLLRGLPG----- 64
           RQGKS KWI+N GKGLA GWARGP   P  CRW AR+   RA+    R+ RG  G     
Sbjct: 136 RQGKSAKWIQNSGKGLAEGWARGPSPNPPGCRWTARSCSPRAQSWSSRVGRGRTGNAPLG 195

Query: 65  ---VERSAQNRNADKGN 70
                 S      DKGN
Sbjct: 196 PSPAPNSRLRTGTDKGN 212

[Close]

BLAST of Sed0005859 vs. ExPASy TrEMBL
Match: A0A6A5L3R0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046809 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 43/76 (56.58%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAAL-ARAERLL-------- 60
          MEQCRQGKS KWIRN GK + + GWARGP  +PV CRW ARAAL ARA R +        
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGPSPEPVGCRWTARAALAARAGRRVPVGGRIGN 60

Query: 61 ----RGLPGVERSAQN 63
                 PGVE+S QN
Sbjct: 61 GPFGASSPGVEQSTQN 76

[Close]

BLAST of Sed0005859 vs. ExPASy TrEMBL
Match: A0A0R0GR07 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G011200 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAALARAERLL 51
          MEQCRQGKS KWIRN GK + + GWARGP  +PV CRW ARAA  R ER++
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGPSPEPVGCRWTARAA-PRRERVV 50

[Close]

BLAST of Sed0005859 vs. ExPASy TrEMBL
Match: A0A4D6MRN5 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g1468 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAA 43
          MEQCRQGK  KWIRN GK + + GWA GP  +PV CRW ARAA
Sbjct: 1  MEQCRQGKLAKWIRNLGKRIGSEGWAGGPSPEPVGCRWTARAA 43

[Close]

BLAST of Sed0005859 vs. ExPASy TrEMBL
Match: A0A2N0NGR7 (Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=RhiirA5_482272 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 40/76 (52.63%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 1   MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSK----PVICRWIAR--AALARA------E 60
           MEQCRQGKS KWIRN GK + + GWARG  S+    PV C   +R  + L RA      E
Sbjct: 65  MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLPVDCLSCSRGESGLPRAGWGTDWE 124

Query: 61  RLLRG-LPGVERSAQN 63
             LRG  PGVE+S QN
Sbjct: 125 WFLRGPSPGVEQSTQN 140

[Close]

BLAST of Sed0005859 vs. ExPASy TrEMBL
Match: C6JSQ5 (Uncharacterized protein (Fragment) OS=Sorghum bicolor OX=4558 GN=Sb2026s002010 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1  MEQCRQGKSVKWIRNHGKGL-ARGWARGPDSKPVICRWIARAA-LARAER 49
          MEQCRQGKS K IRN GK + + GWARGP  +PV CR  ARAA  ARA R
Sbjct: 1  MEQCRQGKSAKRIRNFGKRIGSEGWARGPGPEPVGCRRTARAAHAARAGR 50

The following BLAST results are available for this feature:

BLAST of Sed0005859 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1856207.1	3.6e-10	56.58	hypothetical protein Lal_00046809 [Lupinus albus]	[more]
KAF7801192.1	1.2e-08	50.57	hypothetical protein G2W53_044871 [Senna tora]	[more]
KRH17737.1	2.0e-08	66.67	hypothetical protein GLYMA_13G011200v4 [Glycine max]	[more]
KAG9438641.1	5.8e-08	73.81	hypothetical protein H6P81_021417 [Aristolochia fimbriata]	[more]
KAG9444709.1	2.2e-07	48.05	hypothetical protein H6P81_016049 [Aristolochia fimbriata]	[more]

BLAST of Sed0005859 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5L3R0	1.7e-10	56.58	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046809 PE=4 SV=1	[more]
A0A0R0GR07	9.6e-09	66.67	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G011200 PE=4 SV=1	[more]
A0A4D6MRN5	6.9e-07	67.44	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g1468 PE=4 SV=1	[more]
A0A2N0NGR7	9.9e-06	52.63	Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=Rhiir...	[more]
C6JSQ5	1.3e-05	66.00	Uncharacterized protein (Fragment) OS=Sorghum bicolor OX=4558 GN=Sb2026s002010 P...	[more]

BLAST of Sed0005859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005859.1	Sed0005859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane