Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTCCCTATATAAACCATTCAGAAGCAAAGAAAAAAAGCCACAAAGGTCTCTAAGGCATAAAGAGTAAATCGCACTCATTACCCCATGGCTGATTTTCGATACGGTTTCTTTCGTCGACCTGAAGAAAATAGGAAAACAGGCCATGCCCTTGATCACAAATCAAGGCTAGGTCGTGTCGATGCAGAAGAAAGGCGACAACCTATCACTGTTTTGCCTGGAACAAGGTACGTTATGACAACCGAGACGTATACCGAAGAAGTTTGCTTAAGTTCAAGAGATGAGTCCCCACATAGCCATGCCAAGAAGTATGAACCAGTGAAGCATCATGATTTCAATAAGCTCATAGCCAAAGTCCCAAGAGATGCAAGCCAGCCAAAACATGACGTGAGCTTAAGTGAACCAATGAATGATATTCATAAGGCCATAGAGTTTTTCAAAGAAGTTGTAAATCTTCACACTAGCAAGTACCCTTGTGCTACAACAGATCATCCTAAGAAATATGACCACACGAAAACTATTGACCATGACGGAGCGGCTCGAAGATACGGGAATTTCGGTGCACCACCCCCGGTGCTAGGTGCCAATGTAGCAACCATTGACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGCAACAGTGTGAAACCAAGTGAAAGAGGATGCTTTGTTATGTAATGATAAGACAAGGTTTGAAAATGTAGCTACTGTTTCAAGACTCAATAGTGTTTCTTGCTTTTGTTTGCAGCCATCAATAAAGTTTAGTAAAGGTGTGAAATTATAAGTTTAGCTAAATCTATCAACTTTCAATTTTGTGTGCAATAAGGTGATTTTTTTAAAGATGCCTGATAATTTTATTAATTTTCAATATCCAC
mRNA sequence
CAGGTCCCTATATAAACCATTCAGAAGCAAAGAAAAAAAGCCACAAAGGTCTCTAAGGCATAAAGAGTAAATCGCACTCATTACCCCATGGCTGATTTTCGATACGGTTTCTTTCGTCGACCTGAAGAAAATAGGAAAACAGGCCATGCCCTTGATCACAAATCAAGGCTAGGTCGTGTCGATGCAGAAGAAAGGCGACAACCTATCACTGTTTTGCCTGGAACAAGGTACGTTATGACAACCGAGACGTATACCGAAGAAGTTTGCTTAAGTTCAAGAGATGAGTCCCCACATAGCCATGCCAAGAAGTATGAACCAGTGAAGCATCATGATTTCAATAAGCTCATAGCCAAAGTCCCAAGAGATGCAAGCCAGCCAAAACATGACGTGAGCTTAAGTGAACCAATGAATGATATTCATAAGGCCATAGAGTTTTTCAAAGAAGTTGTAAATCTTCACACTAGCAAGTACCCTTGTGCTACAACAGATCATCCTAAGAAATATGACCACACGAAAACTATTGACCATGACGGAGCGGCTCGAAGATACGGGAATTTCGGTGCACCACCCCCGGTGCTAGGTGCCAATGTAGCAACCATTGACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGCAACAGTGTGAAACCAAGTGAAAGAGGATGCTTTGTTATGTAATGATAAGACAAGGTTTGAAAATGTAGCTACTGTTTCAAGACTCAATAGTGTTTCTTGCTTTTGTTTGCAGCCATCAATAAAGTTTAGTAAAGGTGTGAAATTATAAGTTTAGCTAAATCTATCAACTTTCAATTTTGTGTGCAATAAGGTGATTTTTTTAAAGATGCCTGATAATTTTATTAATTTTCAATATCCAC
Coding sequence (CDS)
ATGGCTGATTTTCGATACGGTTTCTTTCGTCGACCTGAAGAAAATAGGAAAACAGGCCATGCCCTTGATCACAAATCAAGGCTAGGTCGTGTCGATGCAGAAGAAAGGCGACAACCTATCACTGTTTTGCCTGGAACAAGGTACGTTATGACAACCGAGACGTATACCGAAGAAGTTTGCTTAAGTTCAAGAGATGAGTCCCCACATAGCCATGCCAAGAAGTATGAACCAGTGAAGCATCATGATTTCAATAAGCTCATAGCCAAAGTCCCAAGAGATGCAAGCCAGCCAAAACATGACGTGAGCTTAAGTGAACCAATGAATGATATTCATAAGGCCATAGAGTTTTTCAAAGAAGTTGTAAATCTTCACACTAGCAAGTACCCTTGTGCTACAACAGATCATCCTAAGAAATATGACCACACGAAAACTATTGACCATGACGGAGCGGCTCGAAGATACGGGAATTTCGGTGCACCACCCCCGGTGCTAGGTGCCAATGTAGCAACCATTGACTGCAAAGAGGCTGCAAGGAAGTATAAAGGTGCAACAGTGTGA
Protein sequence
MADFRYGFFRRPEENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMTTETYTEEVCLSSRDESPHSHAKKYEPVKHHDFNKLIAKVPRDASQPKHDVSLSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRYGNFGAPPPVLGANVATIDCKEAARKYKGATV
Homology
BLAST of Sed0005851 vs. NCBI nr
Match:
KAG6599284.1 (putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 192.2 bits (487), Expect = 4.0e-45
Identity = 112/213 (52.58%), Postives = 128/213 (60.09%), Query Frame = 0
Query: 1 MADFRYGFFRRP---------EENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMT 60
MADFRYGFF RP EE T H D K + VDA RR P VLP RYV T
Sbjct: 1 MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60
Query: 61 TETYTEEVCLSSRDESPHSHAKKYEPVK----HHD----------------FNKLIAKVP 120
TETYTEE +SRD +SH K EPVK HHD FN+L+ KV
Sbjct: 61 TETYTEEFYSNSRDGFQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKVE 120
Query: 121 RDASQPKHDVSLSEPMNDIHKAIEFFKEVVNL-HTSKYPCATTDHPKKYDHTKTIDHDGA 180
+ Q KH++ +S+PMNDI KAIEFFKE VNL + C DHPKK +TKTID + A
Sbjct: 121 MEEDQVKHEMRISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSNEA 180
Query: 181 ARRYGNFGAPPPVLGANVATIDCKEAARKYKGA 184
ARR+GNFG PPPV AN ATI+CKEAARKYK +
Sbjct: 181 ARRFGNFGVPPPVPSANGATINCKEAARKYKAS 213
BLAST of Sed0005851 vs. NCBI nr
Match:
KGN60838.1 (hypothetical protein Csa_019431 [Cucumis sativus])
HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 108/211 (51.18%), Postives = 122/211 (57.82%), Query Frame = 0
Query: 1 MADFRYGFFRRPEENR----------KTGHALDHKSRLGRVDAEERRQPITVLPGTRYVM 60
MADFRYGFF RP+ + K GH D KS+ +DA R+QPI +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60
Query: 61 TTETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDAS 120
E YTEEV H KKYEPVK+ D FNKL+A V ++A
Sbjct: 61 PIEKYTEEV-----------HTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEAR 120
Query: 121 QPKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRY 180
PK+++ LSEPM DI KAIE KEVVNL SK +K TKTID AARRY
Sbjct: 121 LPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASARRKDSCTKTIDSKEAARRY 180
Query: 181 GNFGAPPPVLGANVATIDCKEAARKYKGATV 186
G FGAP PV ANVATIDCKEAARKY GA V
Sbjct: 181 GKFGAPVPVSNANVATIDCKEAARKYNGAAV 200
BLAST of Sed0005851 vs. NCBI nr
Match:
KAA0063635.1 (hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK18391.1 hypothetical protein E5676_scaffold456G001150 [Cucumis melo var. makuwa])
HSP 1 Score: 154.8 bits (390), Expect = 7.1e-34
Identity = 99/210 (47.14%), Postives = 117/210 (55.71%), Query Frame = 0
Query: 1 MADFRYGFFRR---------PEENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMT 60
MADFRYGFF R PEE + GH + KS+ +DA R++P +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDASQ 120
E +TEEV H KKYEP+K+ D FNKL+AK +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRL 120
Query: 121 PKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRYG 180
PK+++ LSEPMNDI KAIE KE VNL SK + + K TKTID AARRYG
Sbjct: 121 PKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYG 180
Query: 181 NFGAPPPVLGANVATIDCKEAARKYKGATV 186
FGA V AN ATI+CKEAARKY GA V
Sbjct: 181 TFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Sed0005851 vs. NCBI nr
Match:
ADN33904.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 153.3 bits (386), Expect = 2.1e-33
Identity = 98/210 (46.67%), Postives = 116/210 (55.24%), Query Frame = 0
Query: 1 MADFRYGFFRR---------PEENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMT 60
MADFRYGFF R PEE + GH + KS+ +D R++P +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDASQ 120
E +TEEV H KKYEP+K+ D FNKL+AK +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRL 120
Query: 121 PKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRYG 180
PK+++ LSEPMNDI KAIE KE VNL SK + + K TKTID AARRYG
Sbjct: 121 PKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYG 180
Query: 181 NFGAPPPVLGANVATIDCKEAARKYKGATV 186
FGA V AN ATI+CKEAARKY GA V
Sbjct: 181 TFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Sed0005851 vs. NCBI nr
Match:
KDO53349.1 (hypothetical protein CISIN_1g043550mg [Citrus sinensis])
HSP 1 Score: 69.3 bits (168), Expect = 3.9e-08
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
Query: 100 DVSLSEPMNDIHKAIEFFKE------VVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARR 159
D SLS P NDI+ A+ + +E V S+ T P++ D+ +TID AARR
Sbjct: 272 DASLSSPTNDINTAVRYLQEGARPTSVTTAPQSRVTVPITTGPRRDDYGQTIDSREAARR 331
Query: 160 YGNFGAPPPVLGANVATIDCKEAARKYKGATV 186
YGN G+ P TID +EAARKY+G TV
Sbjct: 332 YGNLGSSPVPEERYTGTIDSREAARKYRGTTV 363
BLAST of Sed0005851 vs. ExPASy TrEMBL
Match:
A0A0A0LG87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 108/211 (51.18%), Postives = 122/211 (57.82%), Query Frame = 0
Query: 1 MADFRYGFFRRPEENR----------KTGHALDHKSRLGRVDAEERRQPITVLPGTRYVM 60
MADFRYGFF RP+ + K GH D KS+ +DA R+QPI +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60
Query: 61 TTETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDAS 120
E YTEEV H KKYEPVK+ D FNKL+A V ++A
Sbjct: 61 PIEKYTEEV-----------HTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEAR 120
Query: 121 QPKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRY 180
PK+++ LSEPM DI KAIE KEVVNL SK +K TKTID AARRY
Sbjct: 121 LPKYEMRLLSEPMTDIGKAIECLKEVVNLDCSKNNACAASARRKDSCTKTIDSKEAARRY 180
Query: 181 GNFGAPPPVLGANVATIDCKEAARKYKGATV 186
G FGAP PV ANVATIDCKEAARKY GA V
Sbjct: 181 GKFGAPVPVSNANVATIDCKEAARKYNGAAV 200
BLAST of Sed0005851 vs. ExPASy TrEMBL
Match:
A0A5A7VCJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001150 PE=4 SV=1)
HSP 1 Score: 154.8 bits (390), Expect = 3.4e-34
Identity = 99/210 (47.14%), Postives = 117/210 (55.71%), Query Frame = 0
Query: 1 MADFRYGFFRR---------PEENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMT 60
MADFRYGFF R PEE + GH + KS+ +DA R++P +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDASQ 120
E +TEEV H KKYEP+K+ D FNKL+AK +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRL 120
Query: 121 PKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRYG 180
PK+++ LSEPMNDI KAIE KE VNL SK + + K TKTID AARRYG
Sbjct: 121 PKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYG 180
Query: 181 NFGAPPPVLGANVATIDCKEAARKYKGATV 186
FGA V AN ATI+CKEAARKY GA V
Sbjct: 181 TFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Sed0005851 vs. ExPASy TrEMBL
Match:
E5GBR2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 153.3 bits (386), Expect = 9.9e-34
Identity = 98/210 (46.67%), Postives = 116/210 (55.24%), Query Frame = 0
Query: 1 MADFRYGFFRR---------PEENRKTGHALDHKSRLGRVDAEERRQPITVLPGTRYVMT 60
MADFRYGFF R PEE + GH + KS+ +D R++P +LP TRYV
Sbjct: 1 MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60
Query: 61 TETYTEEVCLSSRDESPHSHAKKYEPVKHHD---------------FNKLIAKVPRDASQ 120
E +TEEV H KKYEP+K+ D FNKL+AK +
Sbjct: 61 IEKHTEEV-----------HTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRL 120
Query: 121 PKHDVS-LSEPMNDIHKAIEFFKEVVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARRYG 180
PK+++ LSEPMNDI KAIE KE VNL SK + + K TKTID AARRYG
Sbjct: 121 PKYEMRLLSEPMNDIGKAIECLKEAVNLDCSKNNACSASYHHKDSCTKTIDSKEAARRYG 180
Query: 181 NFGAPPPVLGANVATIDCKEAARKYKGATV 186
FGA V AN ATI+CKEAARKY GA V
Sbjct: 181 TFGALGRVSSANEATINCKEAARKYNGAEV 199
BLAST of Sed0005851 vs. ExPASy TrEMBL
Match:
A0A067EDT6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043550mg PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
Query: 100 DVSLSEPMNDIHKAIEFFKE------VVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARR 159
D SLS P NDI+ A+ + +E V S+ T P++ D+ +TID AARR
Sbjct: 272 DASLSSPTNDINTAVRYLQEGARPTSVTTAPQSRVTVPITTGPRRDDYGQTIDSREAARR 331
Query: 160 YGNFGAPPPVLGANVATIDCKEAARKYKGATV 186
YGN G+ P TID +EAARKY+G TV
Sbjct: 332 YGNLGSSPVPEERYTGTIDSREAARKYRGTTV 363
BLAST of Sed0005851 vs. ExPASy TrEMBL
Match:
V4T4K4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001604mg PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
Query: 100 DVSLSEPMNDIHKAIEFFKE------VVNLHTSKYPCATTDHPKKYDHTKTIDHDGAARR 159
D SLS P NDI+ A+ + +E V S+ T P++ D+ +TID AARR
Sbjct: 272 DASLSSPTNDINTAVRYLQEGARPTSVTTAPQSRVTVPITTGPRRDDYGQTIDSREAARR 331
Query: 160 YGNFGAPPPVLGANVATIDCKEAARKYKGATV 186
YGN G+ P TID +EAARKY+G TV
Sbjct: 332 YGNLGSSPVPEERYTGTIDSREAARKYRGTTV 363
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6599284.1 | 4.0e-45 | 52.58 | putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KGN60838.1 | 1.5e-39 | 51.18 | hypothetical protein Csa_019431 [Cucumis sativus] | [more] |
KAA0063635.1 | 7.1e-34 | 47.14 | hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK183... | [more] |
ADN33904.1 | 2.1e-33 | 46.67 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
KDO53349.1 | 3.9e-08 | 42.39 | hypothetical protein CISIN_1g043550mg [Citrus sinensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LG87 | 7.1e-40 | 51.18 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1 | [more] |
A0A5A7VCJ6 | 3.4e-34 | 47.14 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
E5GBR2 | 9.9e-34 | 46.67 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A067EDT6 | 1.9e-08 | 42.39 | Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g043550mg PE=4 SV=1 | [more] |
V4T4K4 | 1.9e-08 | 42.39 | Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001604mg PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |