Sed0005832 (gene) Chayote v1

Overview


Name	Sed0005832
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG06: 41631860 .. 41633502 (-)
RNA-Seq Expression	Sed0005832
Synteny	Sed0005832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAACCCTGAACGGATTAGACTGAAAAACAGAAAAAAGAGCTCAAAATCTTGAAGATTTTTGAAGATGGGTCTGTCAAATTTTCCGCCATCAGCCGAAGGGGCGTTGCTGTTGCCAGTTCTAGTGATGAACACAGTGACATCGATGAATTTCTTGAAGAACTTGGTGAGATCTGTGATTCAAATGATGGGTACGATTGGGAATCCCTCGGATTATGAGGAGGAATTTGATTGGGAAAATGGAAGAGAAAGGAGAATCTCAAATACCCAGTTCAAAACCTTGCGGCAGAGCTTCAATGGCGGAACAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAATTAGTGAGTTATCTTGTAAGCATTTTTTTCATAAGGGTTGTCTTTCTAAGTGGTTTGATAATAAGCATTTTACTTGCCCTCTTTGTCGCTCCATTGATTAGAGTTTTGTGGGAAACTTTTGGTTTTGTTTCTACATTTTTTTTAGTTTTTTAGTTTTGTTTTCTTTTTGTTTTGGGTGACGAGGGTGAAATTTTTGTTGTATCTTCACTTTCCCTTTACATATGGTGGTGTATAATGGATTGTTTGGGAGTGAAAGTGCTTTTAGGTGAATCATTCCTAGTTTTTCTTCACTGTTTTATTAAGCACCCTAAAACAAGGAGAATTGAGTACCATTATGAGGAATGAGAATGAGGGGAAAATAGGTATATGATGAATAGTTTGTGTTTGAGGTTCAGAAGAATCTGTTATCTATATTTGGAATCTGTTTGTTTGTTAAGGGGGAAGAGTGATTATGAAAAAATTGTTATCTGTGTTTGGAGCATCTTAAGGCCTTGTTTGGTTTTCCATTTGGAATCCGAGGAACTTGTAACCATTGATTCCGGGAGTTTGGAATCTGGGGATATAAAAATCTAAACAAACCAAACAACATTCTTTATTTTGGAGTATCAATACAACAAACCAAACACCGAATTTGATTACGGTACTGGATTCCGGGGAATTTGGATCCCAACTCGCAAACCAAACCAGGCCTAAATGATTATGTATTTGAGGTGAAGTGAATCTTACGAAAGAAATGTTATCTGTGTTTGGAGTGTCGAAGAATGAATAGTCATTATGGAGAAATGATACGGGTAAGTTGAATGGTCTAATTTGATCACTCCTCCCCAAACACTCCCTTTACAATTCAAAAACACATCTGTGGGGCTTTCTCTGTTCTTATCAGTAAATTAGCTCAATGGACTTGGAAGAAGAAGCACAAAACTAGTTTGCAATCAAAGCAAGTAGCTTTAAATGGCAGAGAGCAACTGAGCCTCAACAGTCGGAACAAGCAGAGCTTTAAATGGCTTAGAGCAGTTGGGCAGTAGTAGCTTAAAAGAAGAAGAAGAATCACAGAATTGAGAACAGTAAAGGCGAGCAGCTTTAAATGGATTGGAGTGGTTGTGCAGTCAATTTCAATGTGGGACCTTTCTTCAGTGCAAAATTTGGTTCCAATGTCATTCAATACAAGAAAACTTCTCTCTGCTTGGCAAATTTGATGGCTTAAATTTTAGTTTGTTAGTTTTTCTTTCTGTCACAAATATTTGTAAGTTGTCTGTACTACTAGTTAGTATTTATATTGAAGGTTGAAGAAGG

mRNA sequence

CCAAAACCCTGAACGGATTAGACTGAAAAACAGAAAAAAGAGCTCAAAATCTTGAAGATTTTTGAAGATGGGTCTGTCAAATTTTCCGCCATCAGCCGAAGGGGCGTTGCTGTTGCCAGTTCTAGTGATGAACACAGTGACATCGATGAATTTCTTGAAGAACTTGGTGAGATCTGTGATTCAAATGATGGGTACGATTGGGAATCCCTCGGATTATGAGGAGGAATTTGATTGGGAAAATGGAAGAGAAAGGAGAATCTCAAATACCCAGTTCAAAACCTTGCGGCAGAGCTTCAATGGCGGAACAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAATTAGTGAGTTATCTTGTAAGCATTTTTTTCATAAGGGTTGTCTTTCTAAGTGGTTTGATAATAAGCATTTTACTTGCCCTCTTTGTCGCTCCATTGATTAGAGTTTTGTGGGAAACTTTTGGTTTTGTTTCTACATTTTTTTTAGTTTTTTAGTTTTGTTTTCTTTTTGTTTTGGGTGACGAGGGTGAAATTTTTGTTGTATCTTCACTTTCCCTTTACATATGGTGGTGTATAATGGATTGTTTGGGAGTGAAAGTGCTTTTAGGTGAATCATTCCTAGTTTTTCTTCACTGTTTTATTAAGCACCCTAAAACAAGGAGAATTGAGTACCATTATGAGGAATGAGAATGAGGGGAAAATAGGTATATGATGAATAGTTTGTGTTTGAGGTTCAGAAGAATCTGTTATCTATATTTGGAATCTGTTTGTTTGTTAAGGGGGAAGAGTGATTATGAAAAAATTGTTATCTGTGTTTGGAGCATCTTAAGGCCTTGTTTGGTTTTCCATTTGGAATCCGAGGAACTTGTAACCATTGATTCCGGGAGTTTGGAATCTGGGGATATAAAAATCTAAACAAACCAAACAACATTCTTTATTTTGGAGTATCAATACAACAAACCAAACACCGAATTTGATTACGGTACTGGATTCCGGGGAATTTGGATCCCAACTCGCAAACCAAACCAGGCCTAAATGATTATGTATTTGAGGTGAAGTGAATCTTACGAAAGAAATGTTATCTGTGTTTGGAGTGTCGAAGAATGAATAGTCATTATGGAGAAATGATACGGGTAAGTTGAATGGTCTAATTTGATCACTCCTCCCCAAACACTCCCTTTACAATTCAAAAACACATCTGTGGGGCTTTCTCTGTTCTTATCAGTAAATTAGCTCAATGGACTTGGAAGAAGAAGCACAAAACTAGTTTGCAATCAAAGCAAGTAGCTTTAAATGGCAGAGAGCAACTGAGCCTCAACAGTCGGAACAAGCAGAGCTTTAAATGGCTTAGAGCAGTTGGGCAGTAGTAGCTTAAAAGAAGAAGAAGAATCACAGAATTGAGAACAGTAAAGGCGAGCAGCTTTAAATGGATTGGAGTGGTTGTGCAGTCAATTTCAATGTGGGACCTTTCTTCAGTGCAAAATTTGGTTCCAATGTCATTCAATACAAGAAAACTTCTCTCTGCTTGGCAAATTTGATGGCTTAAATTTTAGTTTGTTAGTTTTTCTTTCTGTCACAAATATTTGTAAGTTGTCTGTACTACTAGTTAGTATTTATATTGAAGGTTGAAGAAGG

Coding sequence (CDS)

ATGGGTCTGTCAAATTTTCCGCCATCAGCCGAAGGGGCGTTGCTGTTGCCAGTTCTAGTGATGAACACAGTGACATCGATGAATTTCTTGAAGAACTTGGTGAGATCTGTGATTCAAATGATGGGTACGATTGGGAATCCCTCGGATTATGAGGAGGAATTTGATTGGGAAAATGGAAGAGAAAGGAGAATCTCAAATACCCAGTTCAAAACCTTGCGGCAGAGCTTCAATGGCGGAACAGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAATTAGTGAGTTATCTTGTAAGCATTTTTTTCATAAGGGTTGTCTTTCTAAGTGGTTTGATAATAAGCATTTTACTTGCCCTCTTTGTCGCTCCATTGATTAG

Protein sequence

MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGRERRISNTQFKTLRQSFNGGTECCVCLCGFEADEEISELSCKHFFHKGCLSKWFDNKHFTCPLCRSID

Homology

[Close]

BLAST of Sed0005832 vs. NCBI nr
Match: XP_023523084.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023547007.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 110/139 (79.14%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEEFDWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 60

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCAMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Sed0005832 vs. NCBI nr
Match: XP_022984317.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 110/139 (79.14%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEEFDWENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Sed0005832 vs. NCBI nr
Match: KAG6601543.1 (putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032315.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 1.9e-54
Identity = 109/139 (78.42%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEE DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 60

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 61  ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 120

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 121 LSKWFDNKHITCPLCRSIE 139

[Close]

BLAST of Sed0005832 vs. NCBI nr
Match: XP_022957080.1 (probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata])

HSP 1 Score: 222.6 bits (566), Expect = 1.9e-54
Identity = 109/139 (78.42%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEE DWENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Sed0005832 vs. NCBI nr
Match: KAA0034267.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53
Identity = 108/138 (78.26%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVM+TV SM FLKN VRSVIQMM   GN S  EEE+DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISNTQFKTLRQSFNGGT-----------ECCVCLCGFEADEEISELSCKHFFHKGCL 120
           ERRIS TQFKTL QSFNG T           ECCVCLC FEADEE+SELSCKHFFHK CL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHFTCPLCRSID 128
           SKWFDNKHFTCPLCRSI+
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNP------------- 60
           MGLS+ P  +EG  +L V+++NT  S++ +K +VRS + ++G   +P             
Sbjct: 1   MGLSSLPGPSEG--MLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  -SDYEEEFDWE--------NGRERRISNTQFKTL-RQSFNGGTECCVCLCGFEADEEISE 120
            S   E FD+              R    +F++L R       EC VCL  F+ D EI++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           L C H FHK CL KW D  + TCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 73  RQSFNGGTECCVCLCGFEADEEISELSCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           R S N  ++C VCL   +  EE+ +L C+H FHK CL  W  + +F CPLCRS
Sbjct: 65  RYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-09
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 14  LLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDY-EEEFDWEN--GRERRISNTQ-- 73
           + LP L + T++ + F++ +V S+ + +G     SD+ E +  W +      RI  T+  
Sbjct: 10  VFLPKLFVQTLSILGFIRTIVFSIFRFLGL----SDFLEMDQTWPDYTSYPTRIPETRSP 69

Query: 74  FKTL-----------RQSFNGGTE----CCVCLCGFEADEEISEL-SCKHFFHKGCLSKW 126
           F  L            +  N G +    C VCL  FE ++EI  L +C+H FH+ CL +W
Sbjct: 70  FSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRW 129

[Close]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot
Match: Q7ZW78 (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-08
Identity = 37/107 (34.58%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 28  NFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGRERRISNTQFKTLRQSF----------N 87
           N L  L RS++Q +       D     DW    ++R+     K + QS           +
Sbjct: 22  NALLELARSLMQGLDIDSGSFDLS---DW----DQRLPPPAAKAVVQSLPVVIISPEQAD 81

Query: 88  GGTECCVCLCGFEADEEISELSCKHFFHKGCLSKWFDNKHFTCPLCR 125
            G +C VCL  FE  E + E+ CKH FH GC+  W  NK  +CPLCR
Sbjct: 82  KGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWL-NKTNSCPLCR 120

[Close]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot
Match: O64763 (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 78  GGTECCVCLCGFEADEEISEL-SCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           GG EC VCLC FE DE +  +  C H FH  C+  W  ++H TCPLCR+
Sbjct: 131 GGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWL-SEHSTCPLCRA 178

[Close]

BLAST of Sed0005832 vs. ExPASy TrEMBL
Match: A0A6J1J1V9 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111482652 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 110/139 (79.14%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEEFDWENGR
Sbjct: 43  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEEFDWENGR 102

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 103 ERRISITQFKSLGQSFNNGGTEKGSASRCIMAECCVCLCGFEADEEVSELSCKHFFHKAC 162

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 163 LSKWFDNKHITCPLCRSIE 181

[Close]

BLAST of Sed0005832 vs. ExPASy TrEMBL
Match: A0A6J1GZI7 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC111458569 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.2e-55
Identity = 109/139 (78.42%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKNLVRSVIQMM   GNPS  EEE DWENGR
Sbjct: 75  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVIQMMSASGNPSSSEEELDWENGR 134

Query: 61  ERRISNTQFKTLRQSFNGG------------TECCVCLCGFEADEEISELSCKHFFHKGC 120
           ERRIS TQFK+L QSFN G             ECCVCLCGFEADEE+SELSCKHFFHK C
Sbjct: 135 ERRISITQFKSLGQSFNNGGTEKGSASRCVMAECCVCLCGFEADEEVSELSCKHFFHKAC 194

Query: 121 LSKWFDNKHFTCPLCRSID 128
           LSKWFDNKH TCPLCRSI+
Sbjct: 195 LSKWFDNKHITCPLCRSIE 213

[Close]

BLAST of Sed0005832 vs. ExPASy TrEMBL
Match: A0A5A7SYA9 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001500 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.8e-54
Identity = 108/138 (78.26%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVM+TV SM FLKN VRSVIQMM   GN S  EEE+DWENGR
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMHTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENGR 60

Query: 61  ERRISNTQFKTLRQSFNGGT-----------ECCVCLCGFEADEEISELSCKHFFHKGCL 120
           ERRIS TQFKTL QSFNG T           ECCVCLC FEADEE+SELSCKHFFHK CL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHFTCPLCRSID 128
           SKWFDNKHFTCPLCRSI+
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Sed0005832 vs. ExPASy TrEMBL
Match: A0A0A0KTI8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 108/138 (78.26%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPSDYEEEFDWENGR 60
           MGLSNFPPSAEG LLLPVLVMNTV SM FLKN VRSVIQMM   GN S  EEE+DWEN R
Sbjct: 1   MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNFVRSVIQMMSASGNSSSSEEEYDWENRR 60

Query: 61  ERRISNTQFKTLRQSFNGGT-----------ECCVCLCGFEADEEISELSCKHFFHKGCL 120
           ERRIS TQFKTL QSFNG T           ECCVCLC FEADEE+SELSCKHFFHK CL
Sbjct: 61  ERRISITQFKTLGQSFNGETEEEFVSRCVMAECCVCLCRFEADEEVSELSCKHFFHKACL 120

Query: 121 SKWFDNKHFTCPLCRSID 128
           SKWFDNKHFTCPLCRSI+
Sbjct: 121 SKWFDNKHFTCPLCRSIE 138

[Close]

BLAST of Sed0005832 vs. ExPASy TrEMBL
Match: A0A6J1DFU2 (probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LOC111019714 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.7e-51
Identity = 106/139 (76.26%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIG--NPSDYEEEFDWEN 60
           MGLSNFPP AEG LLLPVL+MNTV SM FLK+LVRSVIQMM   G  +PS  EEE+D EN
Sbjct: 1   MGLSNFPPPAEGVLLLPVLLMNTVMSMAFLKSLVRSVIQMMSASGSASPSSSEEEYDSEN 60

Query: 61  GRERRISNTQFKTLRQSFNGGT-----------ECCVCLCGFEADEEISELSCKHFFHKG 120
            RERRIS TQFK+LRQSFNGGT           ECCVCLCGFEADEE+SELSCKHFFHK 
Sbjct: 61  ARERRISITQFKSLRQSFNGGTEDGSASRCIAAECCVCLCGFEADEEVSELSCKHFFHKA 120

Query: 121 CLSKWFDNKHFTCPLCRSI 127
           CLSKWFDNKH TCPLCRSI
Sbjct: 121 CLSKWFDNKHITCPLCRSI 139

[Close]

BLAST of Sed0005832 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-31
Identity = 68/134 (50.75%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNPS-DYEEEFDWENG 60
           MG+S++P ++EG  ++P+LVMNTV S++ +KN+VRSV+ M+ +  N + + E++ D E+ 
Sbjct: 1   MGISHYPTASEG--VMPMLVMNTVVSVSLVKNMVRSVVNMVSSETNEARNKEDDQDHEDS 60

Query: 61  -RERRISNTQFKTLRQSFNGGTE-----CCVCLCGFEADEEISEL-SCKHFFHKGCLSKW 120
            R RRIS T F++L ++     E     CCVCLCGF+ +EE+SEL SCKH+FH  CL KW
Sbjct: 61  KRRRRISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFHSACLDKW 120

Query: 121 FDNKHFTCPLCRSI 127
           F N H TCPLCRSI
Sbjct: 121 FGNNHTTCPLCRSI 132

[Close]

BLAST of Sed0005832 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 8.0e-27
Identity = 63/115 (54.78%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 21  MNTVTSMNFLKNLVRSVIQMMGTIGNPS---DYEEEFDWENGRERRISNTQFKTLRQSF- 80
           MNTV S+  LKN+VRSV Q++ +    S   D E E D+     RRIS TQFK+L ++  
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVT---RRISITQFKSLCENIE 60

Query: 81  ----NGGTECCVCLCGFEADEEISEL-SCKHFFHKGCLSKWFDNKHFTCPLCRSI 127
                 G ECCVCLCGF+ +EE+SEL SCKHFFH+ CL  WF N H TCPLCRSI
Sbjct: 61  EEEEEKGVECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSI 112

[Close]

BLAST of Sed0005832 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.8e-17
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNP------------- 60
           MGLS+ P  +EG  +L V+++NT  S++ +K +VRS + ++G   +P             
Sbjct: 1   MGLSSLPGPSEG--MLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  -SDYEEEFDWE--------NGRERRISNTQFKTL-RQSFNGGTECCVCLCGFEADEEISE 120
            S   E FD+              R    +F++L R       EC VCL  F+ D EI++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           L C H FHK CL KW D  + TCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Sed0005832 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.8e-17
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 0


Query: 1   MGLSNFPPSAEGALLLPVLVMNTVTSMNFLKNLVRSVIQMMGTIGNP------------- 60
           MGLS+ P  +EG  +L V+++NT  S++ +K +VRS + ++G   +P             
Sbjct: 1   MGLSSLPGPSEG--MLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSE 60

Query: 61  -SDYEEEFDWE--------NGRERRISNTQFKTL-RQSFNGGTECCVCLCGFEADEEISE 120
            S   E FD+              R    +F++L R       EC VCL  F+ D EI++
Sbjct: 61  NSSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINK 120

Query: 121 LSCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           L C H FHK CL KW D  + TCPLCR+
Sbjct: 121 LKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Sed0005832 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-11
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 73  RQSFNGGTECCVCLCGFEADEEISELSCKHFFHKGCLSKWFDNKHFTCPLCRS 126
           R S N  ++C VCL   +  EE+ +L C+H FHK CL  W  + +F CPLCRS
Sbjct: 65  RYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

The following BLAST results are available for this feature:

BLAST of Sed0005832 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523084.1	3.8e-55	79.14	probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022984317.1	3.8e-55	79.14	probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]	[more]
KAG6601543.1	1.9e-54	78.42	putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma sub...	[more]
XP_022957080.1	1.9e-54	78.42	probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]	[more]
KAA0034267.1	1.6e-53	78.26	putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa] >TYK15653...	[more]

BLAST of Sed0005832 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI09	1.4e-15	35.14	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9ZU51	1.1e-09	47.17	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9XF92	7.3e-09	31.58	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q7ZW78	3.6e-08	34.58	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2	[more]
O64763	1.4e-07	51.02	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]

BLAST of Sed0005832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1V9	1.8e-55	79.14	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GZI7	9.2e-55	78.42	probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7SYA9	7.8e-54	78.26	Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KTI8	1.7e-53	78.26	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G598060 P...	[more]
A0A6J1DFU2	4.7e-51	76.26	probable E3 ubiquitin-protein ligase XERICO OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Sed0005832 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67856.1	3.1e-31	50.75	RING/U-box superfamily protein	[more]
AT1G24580.1	8.0e-27	54.78	RING/U-box superfamily protein	[more]
AT2G04240.1	9.8e-17	35.14	RING/U-box superfamily protein	[more]
AT2G04240.2	9.8e-17	35.14	RING/U-box superfamily protein	[more]
AT2G01150.1	8.0e-11	47.17	RING-H2 finger protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 82..123 e-value: 5.3E-4 score: 29.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 81..124 e-value: 8.0E-11 score: 42.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 82..124 score: 11.825393
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 48..127 e-value: 2.8E-16 score: 61.0
IPR044249	Probable E3 ubiquitin-protein ligase XERICO-like	PANTHER	PTHR47258	FAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR47258:SF3	F21J9.24-RELATED	coord: 1..126
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 81..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005832.1	Sed0005832.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding