Sed0005805 (gene) Chayote v1

Overview
NameSed0005805
Typegene
OrganismSechium edule (Chayote v1)
DescriptionU1 small nuclear ribonucleoprotein 70 kDa
LocationLG10: 7085121 .. 7090346 (+)
RNA-Seq ExpressionSed0005805
SyntenySed0005805
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCACTTTGTCACATCTTCCCGTTCTCTGCGTTTCTGAAATTAGATCCAAAGCAAGAACCCTACACATGTTCTTCCTTTTCTCTCTATTGGATCTTCCATAACAAAATTCCCTTAATCTGAGCGCCGATCCTTCGAAACCATGGCGGATTACAATGACGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGCGCCAGTGTTCTTCAACTCAAGCTGGTACGTGAAATGATTTCGATCATCATCATCATCATCATTTCTGTAGTATCCTTCGATTTTGTTTTGTATTAACTTAGCTAGGGTTTCAAGAAGTCGTTCTGCATAGTGACAACTTATGCATAAATGTCGGTTTTATAGGTTTAGAGACGATAAATTGATTTCTATCTGTGTTACAACCTAGTCCCCGAGGGGCACCCAAAACATGCTTCCTCGAGAGATCCCTGAATAACCTTCGATGTATGTTAGGGACGGGACAGTGGTGTCTCGGATTTCCTGGTTTTAAATAAAAAAAAAAAAGTCTGTGTTTGGATGTATTGTGGATGAATGGTTTTGTTTGTTGTTTAGAGAGGCAGATGGTGTGAAATTGTGGATTGTGGTGTGGTTTTTAGAGGAGTTCTAGATGAGTTTGTATATCTTTTGATTATGGAATCTGTCGGTTGCTTGATTTTCCTTCTCCTGCAGATTGGGCAGAGTCATCCCACGGGTCTTACGTCCAATCTTCTGAAGCTATTTGAGCCCCGACCGCCTTTGGAGTTTAAACCTCCACCAGAGAAAAGAAAATGTCCTCCATTAACAGGTTTTTTGTACTTTTCAAAACTTGCATTTTATTAAGTGTTGTCTTACTTTTCACTTTTCATTGTTTTTGCTGAGGGATGCAATTCTCTATCTCATTGTGTTTCGAAGGGATGGCCCAGTTTGTGAGTAAATTCGCAGAACCTGATGATCCGGAATATGCTCCTCCTGTTCAAGAGAGTGAAACTCCTGTAAGATAATTTCACCTCTTAATGATTATCTGAAACAATTTCCCCAATCATTCTCAAAGTAAAATTTTAATCTCGCCAATACACGCATGTTTTGAGTGCACATGTATAATTAGGAAGATGAGTATTGAGCTTGTATTTCTTAAAGGCTGTTGGTAGATTGCAATTGTGGTGCAACATGGTTTGATTTTAAACACAGTTTTAAGAGTGTAGATTAGGTATCTTGTAAATTACAAGTCTCGTGTGTAACAAACGTTTTAACTGTGTTTAATTAATTAGGCGGCTAGTGTGTAGATTTTAAGGATACAATTTTTTTAATGCTAGAGTGTATCAAACAACTCATTTGCCCATGATTCTCTTTAACGAAGTAGTGAATTTAGCAAACAGAGAAATTAACAAGAAAAAACATTTAATGACATTAGGATACAGTCCTAAGAACTCTAGTTTTCAAAATTAAATGACGGTGCATAAAGCTATGTAAATTATGAAGTAACTATTTAAGATTCTGAATAATCTGAAACTGAAACTTTTCAGGCACAAAGGAGGGCTAGAATTCACATGCTAAAAATTGAAAAGGGTGCAGAGAAAGTTGCTGAGGAGCTGCCAAAATGTGATACATCTTTTCAGTACTCACCCTGAATTTGTAGTTAAAAAGATTTTTAATGTATTTTGTCTGACGTGTGTTCTTCTGAGCAGATCTTGAACGTGATGATCCAAATGTCACCGGAGATCCATACAAAACTCTCTTTGTGGCAAGACTGGTGTGTAAATTGTAGTGTACATATATTTTTTTTTAAATTTAAGGTTAGTGTTCACATATAATTATCGTTATCCGTTGGCAGAACTTCGAGACTTCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGGTAGGTATTTGAGCATCCTCATGGTGCTTGGTAAGAGGCTAATATTTGTTTATTGAATTAAATACTTTAATTTCACTATCAGAAAGATTGATTGGGTAGTTATCATGTTTGGATTATGTTTTGGTTCATTTTCCTTCAAAAAATATTTTTTGAATCTATACTATTTAAAACTATCACGGGTAGGTCTAGTGTAATACTAAGCATGGGTTTTCTTGGGTGGATTGTCTTAGGTGGTTTTCTTGTAATGCTTTTTGTTGTTACACTTACAGTGATACTAAAATGGTTCATGCTTTCATTTTAAATAACCCATTAAAAATTCCGGTGGCCTTCTGAATTATGCATCAGACATGCCAAACAGGTCTCTTCTTTTCTTGTTGTCATTCAACTTTCTCCCCCTTTGAAGTAGTCAAATTTCTGGGTAAGTTTTTATAGGAGTAAAACATATTTATACCTGACTGGGTCCTTGATGGAACTATTTGAAGAAAAGGTAATGCCAAACACCTCCCTGGATTCATCATCGATAATTCAAGCTCTTAATAGTCTCTCAGGTAAAGCTGCTGGTATGCAGTAATGTCTTTCATTTGTATTTCATTTTCCTCTTAGTGACCATGTCGTTGGCCAGACATAGTTTGGTAGAGAATTCTTGAGGTATGATTGATATTAATAGGAAACTCCTTAGTAAGGTTCTATACATCAAGAATTTCTGGTAAGGAGGCAGTTACTCTACATTCAGCCAAATATTATTAATGATATCAGTGTTTCTACGGCTCCGATCCCAAGATAGTGCACTTCACCATCCCTGACAAAGCCGGAAATTTTAAGTTGGGCAGTGGAGTGATGTTCTTGGCCTTTTGGTCTTTATATTCCAAGCAACAAAGGAGATTGTGCAACTTCCTATTTTTCAGCCTTGGGTAAACACGTAGGGAGTATTAGCATCCCTTTCTCCTTTGAATTTTGTACTGCATGGATTTTCTGCTGCTAAAAGTTTTACTTTTGGCTTTAAAGGCATCAAAAAATCTCTGCCGTTGAGAAGATTCCCTGGTATTTCCTTTATTATATATATACGTTTTTTCATTATTTGAAAAATAATTTCCATGGTAAGGGGAATTTAGTATGTTCAACAACTGGTAAAATGGCCACAAATACTTCAGTTTTTCCGACTCTAGCTGGTGGTGATGCATCTCCGGATGGAAGCTCTATGATTTAAAGGTGAGCACGGCTAATTAGGCATAGTGCCTGTCTGCCGTGCCAATAGGATTAGCTTATAATAAACTTTCTGACACTATTAAGCTATAAGCTAATAAAACCTTTATGGAGAAAATATAATTGAAAGAGATTTTAACTTTTCTTCTGCAATATGACTTGTTTGTGTAATTTTCTTTGTTTTGCAGGTCCGATTGATTACGGACAATGTGACAGGAAAACCTAAAGGTTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGGTTTGTTTCATTTGAAGTTTTTAACCCTTTTTCTATTAGATTATTTTTTCCAGTTGAGACTAATTAATTTACTCGCCTACATTTGAAACTAATCAGCTGCCTATAAGCAAGCTGATGGTAGGAAGATTGATGGTAGAAGGGTACTGGTGGATGTTGAACGAGGTAGAACCGTGCCGAATTGGCGTCCTCGCCGGCTAGGTGGTGGTCTTGGAACCACCAGAGTGGGAGGTGAAGAAAATAGTCAGAGGCAATCGGGAAGGTAACTAATATGGTGTTAATAACTCCTGCTCTTTCAAGTGCAAGCCATTCAGAAATATTGATGATTATTGACAGCACTGAGTGCGTGATAAGCATTTTCGATTTGATATTTTGTGCCTTCGGGAGTTTAAGTATTCTGTGGAATATTGAAAATTTATAAAGATGAGACTGAATTTGATATATTATTTTTCACGCTGAAAGCATTTGTAATTTTGTTCAGGGAGCAACAGCAGTCTGGAGCACCATCTCGATCAGAGGAGCCTCGAGTTCGTGAAGATCGTCATGGAGAAAGGTATGATGATCCAAACCATTGTTAAATGAAAATTTTCCTTTCAGCATCTGAACGTAACTTCAGTTTATTGTTAATTTTAAGATGCTATGCAAATAAACTTCAATTTAATGTTTTCAGAGATAGAGAAAAGTCAAATGAAAGGGGAAGAGACAGAGAAAGAGAGAAGTCTCGTGAACGTTCGCATGAGAGATCTAAGGATCGTGATGTCAGAGAAGACAGACATCACAGAGATCGTGATAGGACTAGAGATAGGGATAGGGAAAGAGAGAGAGACCGTGGCTATGACCGCGATAGGACACGTGATCGCGATCGAGGAAGGGATCGAGGTCGTGATTATGAGCGTGACAGAGATCGTGATCGGGATCGTCATCGAGACAGAGATAGGGAGAGAGATCGGGATCATGAAGGGGGGAATGCAGACCCGGATCATGGTCGCTCTTACGATAGGGAATCTGATTATGACCGGATTGAATCAAAATACGAAAAGGATAGACATGGACATGGTGATAAGGACAGAGATATTGATCATGGTGAAGCTGAGGACGGTCGTGGGTGGTATGATCAGCCTGAACATGGGCACAGACACACAGATACTGATCACGATCCCCAATATTATGATCACTTTGAACACAACCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGTGACCATGATCGCTATGACCAGAACGATAGAATGGAGGATGATTACCATTATGAGTGCGACACTTCTGAATCACATGATAGAGAGAAGTCTCGTGATTTGAATCATGAATATAGGCGCAGTGAGAGATCTCATTCAAGAGAGTATTAGTTTCTCACGCGCTGCAGTGTTTTCTGCCGGTAAGTACCTGCTCACTCTCTTCCCTTTTGCTTCTCCCATTTGTATTCCTGAATGCTATTTCCCAGGTTAGGGTGATGATATCAAATTCCATGAAAATATCGCTTAGTGGCTGCGATCGGGTTGGAATCGTCTTTCTTTCTTTTGATAATTGACCTCAAGTTGCTCGAACATTGTTGGATACGCTGTATGTTTGGTGTTGTTTCAGTTTTAGCCACTTTATGCAGATTTTTGCTCGGTTTATTTATGAGCTTAAAACTCCTAGACTTGCTGTGTAATAGTTTTCTGACCATGCTTTTTAAGCCCCTTTAGTGTATTTTGAATGCTTGATTTGATTGAACGTTAATTTGCTGTGCGGTTGTGTGGTATCTAAGTTTGGGTTAATATAACCAAAGTAATTACCTAGGGTGAATATACGTACCCCACTAAATGAATATGTGGTAAATACATG

mRNA sequence

ACCACTTTGTCACATCTTCCCGTTCTCTGCGTTTCTGAAATTAGATCCAAAGCAAGAACCCTACACATGTTCTTCCTTTTCTCTCTATTGGATCTTCCATAACAAAATTCCCTTAATCTGAGCGCCGATCCTTCGAAACCATGGCGGATTACAATGACGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGCGCCAGTGTTCTTCAACTCAAGCTGATTGGGCAGAGTCATCCCACGGGTCTTACGTCCAATCTTCTGAAGCTATTTGAGCCCCGACCGCCTTTGGAGTTTAAACCTCCACCAGAGAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTAAATTCGCAGAACCTGATGATCCGGAATATGCTCCTCCTGTTCAAGAGAGTGAAACTCCTGCACAAAGGAGGGCTAGAATTCACATGCTAAAAATTGAAAAGGGTGCAGAGAAAGTTGCTGAGGAGCTGCCAAAATATCTTGAACGTGATGATCCAAATGTCACCGGAGATCCATACAAAACTCTCTTTGTGGCAAGACTGAACTTCGAGACTTCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGGTCCGATTGATTACGGACAATGTGACAGGAAAACCTAAAGGTTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCCTATAAGCAAGCTGATGGTAGGAAGATTGATGGTAGAAGGGTACTGGTGGATGTTGAACGAGGTAGAACCGTGCCGAATTGGCGTCCTCGCCGGCTAGGTGGTGGTCTTGGAACCACCAGAGTGGGAGGTGAAGAAAATAGTCAGAGGCAATCGGGAAGGGAGCAACAGCAGTCTGGAGCACCATCTCGATCAGAGGAGCCTCGAGTTCGTGAAGATCGTCATGGAGAAAGAGATAGAGAAAAGTCAAATGAAAGGGGAAGAGACAGAGAAAGAGAGAAGTCTCGTGAACGTTCGCATGAGAGATCTAAGGATCGTGATGTCAGAGAAGACAGACATCACAGAGATCGTGATAGGACTAGAGATAGGGATAGGGAAAGAGAGAGAGACCGTGGCTATGACCGCGATAGGACACGTGATCGCGATCGAGGAAGGGATCGAGGTCGTGATTATGAGCGTGACAGAGATCGTGATCGGGATCGTCATCGAGACAGAGATAGGGAGAGAGATCGGGATCATGAAGGGGGGAATGCAGACCCGGATCATGGTCGCTCTTACGATAGGGAATCTGATTATGACCGGATTGAATCAAAATACGAAAAGGATAGACATGGACATGGTGATAAGGACAGAGATATTGATCATGGTGAAGCTGAGGACGGTCGTGGGTGGTATGATCAGCCTGAACATGGGCACAGACACACAGATACTGATCACGATCCCCAATATTATGATCACTTTGAACACAACCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGTGACCATGATCGCTATGACCAGAACGATAGAATGGAGGATGATTACCATTATGAGTGCGACACTTCTGAATCACATGATAGAGAGAAGTCTCGTGATTTGAATCATGAATATAGGCGCAGTGAGAGATCTCATTCAAGAGAGTATTAGTTTCTCACGCGCTGCAGTGTTTTCTGCCGGTTAGGGTGATGATATCAAATTCCATGAAAATATCGCTTAGTGGCTGCGATCGGGTTGGAATCGTCTTTCTTTCTTTTGATAATTGACCTCAAGTTGCTCGAACATTGTTGGATACGCTGTATGTTTGGTGTTGTTTCAGTTTTAGCCACTTTATGCAGATTTTTGCTCGGTTTATTTATGAGCTTAAAACTCCTAGACTTGCTGTGTAATAGTTTTCTGACCATGCTTTTTAAGCCCCTTTAGTGTATTTTGAATGCTTGATTTGATTGAACGTTAATTTGCTGTGCGGTTGTGTGGTATCTAAGTTTGGGTTAATATAACCAAAGTAATTACCTAGGGTGAATATACGTACCCCACTAAATGAATATGTGGTAAATACATG

Coding sequence (CDS)

ATGGCGGATTACAATGACGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGCGCCAGTGTTCTTCAACTCAAGCTGATTGGGCAGAGTCATCCCACGGGTCTTACGTCCAATCTTCTGAAGCTATTTGAGCCCCGACCGCCTTTGGAGTTTAAACCTCCACCAGAGAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTGAGTAAATTCGCAGAACCTGATGATCCGGAATATGCTCCTCCTGTTCAAGAGAGTGAAACTCCTGCACAAAGGAGGGCTAGAATTCACATGCTAAAAATTGAAAAGGGTGCAGAGAAAGTTGCTGAGGAGCTGCCAAAATATCTTGAACGTGATGATCCAAATGTCACCGGAGATCCATACAAAACTCTCTTTGTGGCAAGACTGAACTTCGAGACTTCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCTTATGGGCCAATCAAGCGGGTCCGATTGATTACGGACAATGTGACAGGAAAACCTAAAGGTTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCCTATAAGCAAGCTGATGGTAGGAAGATTGATGGTAGAAGGGTACTGGTGGATGTTGAACGAGGTAGAACCGTGCCGAATTGGCGTCCTCGCCGGCTAGGTGGTGGTCTTGGAACCACCAGAGTGGGAGGTGAAGAAAATAGTCAGAGGCAATCGGGAAGGGAGCAACAGCAGTCTGGAGCACCATCTCGATCAGAGGAGCCTCGAGTTCGTGAAGATCGTCATGGAGAAAGAGATAGAGAAAAGTCAAATGAAAGGGGAAGAGACAGAGAAAGAGAGAAGTCTCGTGAACGTTCGCATGAGAGATCTAAGGATCGTGATGTCAGAGAAGACAGACATCACAGAGATCGTGATAGGACTAGAGATAGGGATAGGGAAAGAGAGAGAGACCGTGGCTATGACCGCGATAGGACACGTGATCGCGATCGAGGAAGGGATCGAGGTCGTGATTATGAGCGTGACAGAGATCGTGATCGGGATCGTCATCGAGACAGAGATAGGGAGAGAGATCGGGATCATGAAGGGGGGAATGCAGACCCGGATCATGGTCGCTCTTACGATAGGGAATCTGATTATGACCGGATTGAATCAAAATACGAAAAGGATAGACATGGACATGGTGATAAGGACAGAGATATTGATCATGGTGAAGCTGAGGACGGTCGTGGGTGGTATGATCAGCCTGAACATGGGCACAGACACACAGATACTGATCACGATCCCCAATATTATGATCACTTTGAACACAACCGAAGTCGAGGGCAACATGATCACCCAGAAGACCATCGTGACCATGATCGCTATGACCAGAACGATAGAATGGAGGATGATTACCATTATGAGTGCGACACTTCTGAATCACATGATAGAGAGAAGTCTCGTGATTTGAATCATGAATATAGGCGCAGTGAGAGATCTCATTCAAGAGAGTATTAG

Protein sequence

MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKPPPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEENSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRDREREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEAEDGRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDDYHYECDTSESHDREKSRDLNHEYRRSERSHSREY
Homology
[Close]
BLAST of Sed0005805 vs. NCBI nr
Match: XP_022132461.1 (U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia])

HSP 1 Score: 830.5 bits (2144), Expect = 7.9e-237
Identity = 455/512 (88.87%), Postives = 479/512 (93.55%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQ+ ETPAQRRARIH+L+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ET+ESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           N+QR SGREQQQSGAPSRSEEPR REDRHGERDREKS+E+GRD  REREKSRERSHERSK
Sbjct: 241 NNQRHSGREQQQSGAPSRSEEPRGREDRHGERDREKSHEKGRDREREREKSRERSHERSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD----RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRD 360
           DRD+REDRHHRDRDRTRDRD    RERERDRGYDRD+TRDRDRGRDRGRDYERDRDRDRD
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDRERERERDRGYDRDKTRDRDRGRDRGRDYERDRDRDRD 360

Query: 361 RHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEAED 420
           RHRDRDRERDR+HE G  +PD GRS+DRESDYDR+ESKYEKDR  HGD+DR+ID  E ED
Sbjct: 361 RHRDRDRERDRNHEDGYPEPDRGRSHDRESDYDRVESKYEKDR--HGDRDREIDRTETED 420

Query: 421 GRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQH-DHPEDHRDHDRYDQNDRMEDDYH 480
           GRGWYDQ EHGHRH D DHDPQYYDHFEHNR RGQ+ D+PE H D DRYDQ DRMEDDYH
Sbjct: 421 GRGWYDQSEHGHRHPDPDHDPQYYDHFEHNRGRGQYDDNPEGHHDQDRYDQYDRMEDDYH 480

Query: 481 YECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           YE  TSESHD+E+SRD+NHEYRRSERSHSREY
Sbjct: 481 YERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]
BLAST of Sed0005805 vs. NCBI nr
Match: XP_038881482.1 (U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida])

HSP 1 Score: 824.7 bits (2129), Expect = 4.3e-235
Identity = 458/512 (89.45%), Postives = 479/512 (93.55%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQ+ ETPA+RRARIH+L+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSSFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ET+ESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRDRE--REKSRERSHERSK 300
           NSQR SGREQQQ+GAPSRSEEPR REDRH ERDREKS ++GRDRE  REKSRERSHERSK
Sbjct: 241 NSQRHSGREQQQAGAPSRSEEPRAREDRHAERDREKSYDKGRDRERDREKSRERSHERSK 300

Query: 301 DRDVREDRHHRDRDRT--RDRDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRDRH 360
           DRDVREDRHHRDRDRT  RDRDR+RERDRGYDRDRT  RDRGRDRGRD++RDRDRDRDRH
Sbjct: 301 DRDVREDRHHRDRDRTRDRDRDRDRERDRGYDRDRT--RDRGRDRGRDHDRDRDRDRDRH 360

Query: 361 RDRDRE--RDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEAED 420
           RDRDRE  RDRDHEGG  DPD GRS+DR+ DYDRIESKYEKDR  HGD+DRDIDH E ED
Sbjct: 361 RDRDRERDRDRDHEGGYPDPDRGRSHDRD-DYDRIESKYEKDR--HGDRDRDIDHAETED 420

Query: 421 GRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQ-NDRMEDDYH 480
           GRGWYDQPEHGHRH DTDHDPQYYDHFEHNRSRGQ+DH E HRD DRYDQ +DRMEDDY 
Sbjct: 421 GRGWYDQPEHGHRHPDTDHDPQYYDHFEHNRSRGQYDHSEGHRDQDRYDQYDDRMEDDYP 480

Query: 481 YECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           YE  TSESHDRE+SRDLNHEY+RSERSHSREY
Sbjct: 481 YERGTSESHDRERSRDLNHEYKRSERSHSREY 507

[Close]
BLAST of Sed0005805 vs. NCBI nr
Match: XP_023517571.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo] >XP_023517572.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 823.9 bits (2127), Expect = 7.4e-235
Identity = 454/514 (88.33%), Postives = 478/514 (93.00%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQE ETP+QRRARIH+L+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ETSESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR +GREQQQSGAPSRSEEPR REDRHGERDREKS E+GRD  REREKSRERSH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD------RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           DRD+REDRHHRDRDRTRDRD      RERERDRG+DRDRTRDRDRGRDRGRDYERDRDRD
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRER+RDHEGG ADPD GRS+DRESDYDR++SKYEKDR  HGD+++DID GE 
Sbjct: 361 RDRHRDRDRERERDHEGGYADPDRGRSHDRESDYDRVDSKYEKDR--HGDREKDIDPGET 420

Query: 421 EDGRGWYDQPEHGHRH-TDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
           EDG GWYDQP HGHRH  DTDHDPQYYDHFEHNRSR Q+DHPE H   DRYDQ DRMEDD
Sbjct: 421 EDGHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRMEDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           Y YE  TSE+ DRE+SRDLNHEYRR+ERSHSREY
Sbjct: 481 YRYERGTSETRDRERSRDLNHEYRRTERSHSREY 511

[Close]
BLAST of Sed0005805 vs. NCBI nr
Match: XP_022962873.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata] >XP_022962874.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata])

HSP 1 Score: 820.8 bits (2119), Expect = 6.2e-234
Identity = 454/514 (88.33%), Postives = 476/514 (92.61%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQE ETP+QRRARIH+L+IEKGA+K  EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ETSESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR +GREQQQSGAPSRSEEPR REDRHGERDREKS E+GRD  REREKSRERSH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD------RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           DRD+REDRHHRDRDRT DRD      RERERDRG+DRDRTRDRDRGRDRGRDYERDRDRD
Sbjct: 301 DRDLREDRHHRDRDRTIDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRERDRDHEGG ADPD GRS+DRESDYDRI+SKYEKDR  HGD+D+DID GE 
Sbjct: 361 RDRHRDRDRERDRDHEGGFADPDRGRSHDRESDYDRIDSKYEKDR--HGDRDKDIDPGET 420

Query: 421 EDGRGWYDQPEHGHRH-TDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
           EDG GWYDQP HGHRH  DTDHDPQYYDHFEHNRSR Q+DHPE H   DRYDQ DRMEDD
Sbjct: 421 EDGHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRMEDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           Y YE  TSE+ DRE+SRDLNHEYRR+ERSHSRE+
Sbjct: 481 YRYERGTSETRDRERSRDLNHEYRRTERSHSREF 511

[Close]
BLAST of Sed0005805 vs. NCBI nr
Match: XP_023003041.1 (U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003042.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003043.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003044.1 U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima])

HSP 1 Score: 817.8 bits (2111), Expect = 5.3e-233
Identity = 451/514 (87.74%), Postives = 476/514 (92.61%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQE ETP+QRRARIH+L+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ETSESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR +GREQQQSGAPSRSEEPR REDRHGERDREKS E+GRD  REREKSRERSH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD------RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           D D+REDRHHRDRDRTRDRD      RERER+RG+DRDRTRDRDRGRDRGRDYERDRDRD
Sbjct: 301 DHDLREDRHHRDRDRTRDRDRDREKERERERERGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRERDRDH GG ADPD GRS+DRESDYDR++SKYEKDR  HGD+D+DID GE 
Sbjct: 361 RDRHRDRDRERDRDHGGGYADPDRGRSHDRESDYDRVDSKYEKDR--HGDRDKDIDPGET 420

Query: 421 EDGRGWYDQPEHGHRH-TDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
           EDG GWYDQP HGHRH  DTDHDPQYYDHFEHNRSR Q+DHPE H   DRYDQ DRMEDD
Sbjct: 421 EDGHGWYDQPVHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRMEDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           Y YE  TSE+ DRE+SRDLNHEYRR++RSHSRE+
Sbjct: 481 YRYERGTSETRDRERSRDLNHEYRRADRSHSREF 511

[Close]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match: Q42404 (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU1 PE=1 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 3.7e-120
Identity = 302/514 (58.75%), Postives = 346/514 (67.32%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M D  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPP TGMAQFVS FAEP DPEYAPP  E E P+Q+R RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLN+E+SES+IKREFESYGPIKRV L+TD +T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMH RDMKAAYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGG E
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEP-RVREDRHGERDREKSNERGRDREREKSRERSHERSKD 300
               +   EQQ  G  S+SEEP R RE+R  E+ REK  E  R+R RE S E+  ERS+D
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPREER--EKSREKGKE--RERSRELSHEQPRERSRD 300

Query: 301 RDVREDRHHRD-----RDRTRD--RDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           R  RED+HHRD     RDR RD  RDR+R RDRG DRDR RDRDRGRDR     RD DRD
Sbjct: 301 RP-REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR-RDRDRGRDR---TSRDHDRD 360

Query: 361 RDRHRDRDRE-RDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGE 420
           R R ++RD E  + +HEGG      GRS +R+++Y                       GE
Sbjct: 361 RSRKKERDYEGGEYEHEGG------GRSRERDAEY----------------------RGE 420

Query: 421 AEDGRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
            E+ RG+Y+         D   D   Y H                    RYD+ +  EDD
Sbjct: 421 PEETRGYYE---------DDQGDTDRYSH--------------------RYDKME--EDD 425

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           + YE                 EY+RS+RS SREY
Sbjct: 481 FRYE----------------REYKRSKRSESREY 425

[Close]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-61
Identity = 182/422 (43.13%), Postives = 243/422 (57.58%), Query Frame = 0 

Query: 42  LTSNLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++ +F   +DP  APP   +E
Sbjct: 5   LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAQRRARIHMLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKR 161
           T  +R  R    KIE+  + V  EL  +   +D N  GD +KTLFVAR+N++T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVRLITDNVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR+ ++ +  +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTTRVGGEENSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREK 281
           RTV  WRPRRLGGGLG TR GG + + R SGR+          +  R R+ R   R+R+K
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRDRERERDRRERSRERDK 244

Query: 282 SNERGRDREREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRD---RTR 341
             ER R R RE+ R RS  R K+   R     RD+D+ +D+D+++E+D+  DRD   R+R
Sbjct: 245 ERERRRSRSRER-RRRSRSREKEERKRSRERSRDKDKDKDKDKDKEKDKDKDRDRKRRSR 304

Query: 342 DRDRGRDRGRDYE-----------------------------------------RDRDRD 401
            R+R R+R RD E                                         RDRDR+
Sbjct: 305 SRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQTGDLGIDGIELKQEPEEKNRDRDRE 364

Query: 402 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 415
           RDR +DRD++RDRD +   +  D  R  DRE D DR   + ++DR    D+DRD DH   
Sbjct: 365 RDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDR---RRDRDR----DRDRDRDHKRE 415

[Close]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match: Q1RMR2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-57
Identity = 187/438 (42.69%), Postives = 247/438 (56.39%), Query Frame = 0 

Query: 42  LTSNLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++ +F   +DP  APP   +E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAQRRARIHMLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+N++T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVRLITDNVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR+ ++    +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTTRVGGEENSQRQSGRE--QQQSGAPSRSEEPRVREDRHGERD- 281
           RTV  WRPRRLGGGLG TR GG + + R SGR+   +    P  S  P    DR  ER+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 REKSNERGRDREREKSRERS-HERSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRDRT 341
           RE+S ER ++RER +SR R    RS+ RD  E R  R+R + +DRDR+R   R  +R R 
Sbjct: 245 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR- 304

Query: 342 RDRDR--------------------------------------------GRDRGRDYERD 401
           R+R+R                                            GRDR RD  R 
Sbjct: 305 RERERKEELRGGGGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRDRRRS 364

Query: 402 RDRDRDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDID 427
              +R+R RDRDR+RDR+H+ G    D GR   R       ++  E    G G+  RD+ 
Sbjct: 365 HRSERERRRDRDRDRDREHKRGERGGDRGRDEARGGGGGGQDNGLE----GLGNDGRDM- 424

[Close]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match: P08621 (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-55
Identity = 185/437 (42.33%), Postives = 246/437 (56.29%), Query Frame = 0 

Query: 42  LTSNLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++ +F   +DP  APP   +E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAQRRARIHMLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+N++T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVRLITDNVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR+ ++    +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTTRVGGEENSQRQSGRE--QQQSGAPSRSEEPRVREDRHGERD- 281
           RTV  WRPRRLGGGLG TR GG + + R SGR+   +    P  S  P    DR  ER+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 REKSNERGRDREREKSRERS-HERSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRDRT 341
           RE+S ER ++RER +SR R    RS+ RD  E R  R+R + +DRDR+R   R  +R R 
Sbjct: 245 RERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR- 304

Query: 342 RDRDR-----------------------------------------GRDRGRDYERDR-- 401
           R+R+R                                         GRDR R+  R    
Sbjct: 305 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 364

Query: 402 DRDRDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDH 427
           +R+R R RDRDR+RDR+H+ G    + GR   R           +    G G+  RD+ +
Sbjct: 365 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGG-----GGQDNGLEGLGNDSRDM-Y 424

[Close]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match: Q62376 (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-55
Identity = 186/447 (41.61%), Postives = 245/447 (54.81%), Query Frame = 0 

Query: 42  LTSNLLKLFEPRPPLEFKP-----PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESE 101
           L  NLL LF PR P+ + P     P EK    P  G+A ++ +F   +DP  APP   +E
Sbjct: 5   LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREF---EDPRDAPPPTRAE 64

Query: 102 TPAQRRARIHMLKIEKGAEKVAEELPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKR 161
           T  +R  R    KIE+  ++V  EL  +   +DPN  GD +KTLFVAR+N++T+ES+++R
Sbjct: 65  TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 124

Query: 162 EFESYGPIKRVRLITDNVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERG 221
           EFE YGPIKR+ ++    +GKP+GYAFIEY H+RDM +AYK ADG+KIDGRRVLVDVERG
Sbjct: 125 EFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 184

Query: 222 RTVPNWRPRRLGGGLGTTRVGGEENSQRQSGRE--QQQSGAPSRSEEPRVREDRHGERD- 281
           RTV  WRPRRLGGGLG TR GG + + R SGR+   +    P  S  P    DR  ER+ 
Sbjct: 185 RTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERER 244

Query: 282 REKSNERGRDREREKSRERS-HERSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRDRT 341
           RE+S ER ++RER +SR R    RS+ RD  E R  R+R + +DRDR+R   R  +R R 
Sbjct: 245 RERSRERDKERERRRSRSRDRRRRSRSRDKDERRRSRERSKDKDRDRKRRSSRSRERAR- 304

Query: 342 RDRDR-----------------------------------------------------GR 401
           R+R+R                                                     GR
Sbjct: 305 RERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGDGAPDDGPPGELGPEGPDGPEEKGR 364

Query: 402 DRGRDYERDRDRDRDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHG 427
           DR R+  R    +R+R RDRDR+RDR+H+ G    + GR   R        S  +    G
Sbjct: 365 DRDRERRRSHRSERERRRDRDRDRDREHKRGERGSERGRDEARGGG----GSGQDNGLEG 424

[Close]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match: A0A6J1BSC4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC111005312 PE=4 SV=1)

HSP 1 Score: 830.5 bits (2144), Expect = 3.8e-237
Identity = 455/512 (88.87%), Postives = 479/512 (93.55%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQ+ ETPAQRRARIH+L+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAQRRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ET+ESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           N+QR SGREQQQSGAPSRSEEPR REDRHGERDREKS+E+GRD  REREKSRERSHERSK
Sbjct: 241 NNQRHSGREQQQSGAPSRSEEPRGREDRHGERDREKSHEKGRDREREREKSRERSHERSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD----RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRD 360
           DRD+REDRHHRDRDRTRDRD    RERERDRGYDRD+TRDRDRGRDRGRDYERDRDRDRD
Sbjct: 301 DRDLREDRHHRDRDRTRDRDRDRERERERDRGYDRDKTRDRDRGRDRGRDYERDRDRDRD 360

Query: 361 RHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEAED 420
           RHRDRDRERDR+HE G  +PD GRS+DRESDYDR+ESKYEKDR  HGD+DR+ID  E ED
Sbjct: 361 RHRDRDRERDRNHEDGYPEPDRGRSHDRESDYDRVESKYEKDR--HGDRDREIDRTETED 420

Query: 421 GRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQH-DHPEDHRDHDRYDQNDRMEDDYH 480
           GRGWYDQ EHGHRH D DHDPQYYDHFEHNR RGQ+ D+PE H D DRYDQ DRMEDDYH
Sbjct: 421 GRGWYDQSEHGHRHPDPDHDPQYYDHFEHNRGRGQYDDNPEGHHDQDRYDQYDRMEDDYH 480

Query: 481 YECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           YE  TSESHD+E+SRD+NHEYRRSERSHSREY
Sbjct: 481 YERGTSESHDKERSRDMNHEYRRSERSHSREY 510

[Close]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match: A0A6J1HIB1 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111463239 PE=4 SV=1)

HSP 1 Score: 820.8 bits (2119), Expect = 3.0e-234
Identity = 454/514 (88.33%), Postives = 476/514 (92.61%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQE ETP+QRRARIH+L+IEKGA+K  EE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAVEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ETSESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR +GREQQQSGAPSRSEEPR REDRHGERDREKS E+GRD  REREKSRERSH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD------RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           DRD+REDRHHRDRDRT DRD      RERERDRG+DRDRTRDRDRGRDRGRDYERDRDRD
Sbjct: 301 DRDLREDRHHRDRDRTIDRDRDREKERERERDRGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRERDRDHEGG ADPD GRS+DRESDYDRI+SKYEKDR  HGD+D+DID GE 
Sbjct: 361 RDRHRDRDRERDRDHEGGFADPDRGRSHDRESDYDRIDSKYEKDR--HGDRDKDIDPGET 420

Query: 421 EDGRGWYDQPEHGHRH-TDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
           EDG GWYDQP HGHRH  DTDHDPQYYDHFEHNRSR Q+DHPE H   DRYDQ DRMEDD
Sbjct: 421 EDGHGWYDQPAHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRMEDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           Y YE  TSE+ DRE+SRDLNHEYRR+ERSHSRE+
Sbjct: 481 YRYERGTSETRDRERSRDLNHEYRRTERSHSREF 511

[Close]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match: A0A6J1KS72 (U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111496769 PE=4 SV=1)

HSP 1 Score: 817.8 bits (2111), Expect = 2.6e-233
Identity = 451/514 (87.74%), Postives = 476/514 (92.61%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQE ETP+QRRARIH+L+IEKGA+K AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ETSESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR +GREQQQSGAPSRSEEPR REDRHGERDREKS E+GRD  REREKSRERSH+RSK
Sbjct: 241 NSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSK 300

Query: 301 DRDVREDRHHRDRDRTRDRD------RERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           D D+REDRHHRDRDRTRDRD      RERER+RG+DRDRTRDRDRGRDRGRDYERDRDRD
Sbjct: 301 DHDLREDRHHRDRDRTRDRDRDREKERERERERGHDRDRTRDRDRGRDRGRDYERDRDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRERDRDH GG ADPD GRS+DRESDYDR++SKYEKDR  HGD+D+DID GE 
Sbjct: 361 RDRHRDRDRERDRDHGGGYADPDRGRSHDRESDYDRVDSKYEKDR--HGDRDKDIDPGET 420

Query: 421 EDGRGWYDQPEHGHRH-TDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
           EDG GWYDQP HGHRH  DTDHDPQYYDHFEHNRSR Q+DHPE H   DRYDQ DRMEDD
Sbjct: 421 EDGHGWYDQPVHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPE-HHGQDRYDQYDRMEDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           Y YE  TSE+ DRE+SRDLNHEYRR++RSHSRE+
Sbjct: 481 YRYERGTSETRDRERSRDLNHEYRRADRSHSREF 511

[Close]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match: A0A1S3B1S2 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC103485041 PE=4 SV=1)

HSP 1 Score: 813.1 bits (2099), Expect = 6.3e-232
Identity = 451/512 (88.09%), Postives = 473/512 (92.38%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQ+ ETPA+RRARIH+L+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPAERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ET+ESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD--REREKSRERSHERSK 300
           NSQR SGREQQQSGAPSRSEEPR REDRHGERDREKS ++GRD  REREKSRE SHERSK
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRAREDRHGERDREKSYDKGRDREREREKSREHSHERSK 300

Query: 301 DRDVREDRHHRDRDRT----RDRDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRD 360
           +RDVREDRHHRDRDRT    RDRDRER+RDRGYDRDRT  RDRGRDRGRDYE  RDRDRD
Sbjct: 301 ERDVREDRHHRDRDRTRDRDRDRDRERDRDRGYDRDRT--RDRGRDRGRDYE--RDRDRD 360

Query: 361 RHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEAED 420
           RHRDRDRERDRDHEGG  DPD GRS+DR+ DYDR+ESKYEKDRHG  D+DRD+D  E ED
Sbjct: 361 RHRDRDRERDRDHEGGYPDPDRGRSHDRD-DYDRVESKYEKDRHGDRDRDRDMDRAETED 420

Query: 421 GRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQ-NDRMEDDYH 480
           GRGWYDQPEHGHR  D DHDPQYYDHFEHNR RGQ+D PE HRD DRYDQ +DRM+DDYH
Sbjct: 421 GRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRGQYDQPEGHRDQDRYDQYDDRMDDDYH 480

Query: 481 YECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           YE   SESHDRE+SRDLNHEY+RSERSHSREY
Sbjct: 481 YERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match: A0A0A0KGZ1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV=1)

HSP 1 Score: 808.1 bits (2086), Expect = 2.0e-230
Identity = 450/514 (87.55%), Postives = 473/514 (92.02%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M DYNDAFMRNQNAAVQARTKAQNRA+VLQLKLIGQSHPTGLT+NLLKLFEPRPPLEFKP
Sbjct: 1   MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPPLTGMAQFVS FAEPDDPEYAPPVQ+ ETP +RRARIH+L+IEKGAEK AEE
Sbjct: 61  PPEKRKCPPLTGMAQFVSNFAEPDDPEYAPPVQKGETPTERRARIHLLRIEKGAEKAAEE 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           LPKYLERDDPNVTGDPYKTLFVARLN+ET+ESRIKREFESYGPIKRVRLITD VTGKPKG
Sbjct: 121 LPKYLERDDPNVTGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKVTGKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
Sbjct: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRDRE--REKSRERSHERSK 300
           NSQR SGREQQQSGAPSRSEEPRVREDRHGERDREKS ++GRDRE  REKSRE SHERSK
Sbjct: 241 NSQRHSGREQQQSGAPSRSEEPRVREDRHGERDREKSYDKGRDRERDREKSREHSHERSK 300

Query: 301 DRDVREDRHHRDRDRT------RDRDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           +RDVREDRHHRDRDRT      RDRDRER+RDRGYDRDRT  RDRGRDRGRDYE  RDRD
Sbjct: 301 ERDVREDRHHRDRDRTRDRDRDRDRDRERDRDRGYDRDRT--RDRGRDRGRDYE--RDRD 360

Query: 361 RDRHRDRDRERDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGEA 420
           RDRHRDRDRER+RDHEGG  DPD GRS+DR+ DYDR+ESKYEKDR  HGD+DRD+D  E 
Sbjct: 361 RDRHRDRDRERERDHEGGYPDPDRGRSHDRD-DYDRVESKYEKDR--HGDRDRDVDRAET 420

Query: 421 EDGRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQ-NDRMEDD 480
           EDGRGWYDQPEHGHR  D DHDPQYYDHFEHNR RGQ+D PE HRD DRYDQ +DRM+DD
Sbjct: 421 EDGRGWYDQPEHGHR--DADHDPQYYDHFEHNRGRGQYDQPEGHRDQDRYDQYDDRMDDD 480

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           YHYE   SESHDRE+SRDLNHEY+RSERSHSREY
Sbjct: 481 YHYERGNSESHDRERSRDLNHEYKRSERSHSREY 505

[Close]
BLAST of Sed0005805 vs. TAIR 10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 433.3 bits (1113), Expect = 2.6e-121
Identity = 302/514 (58.75%), Postives = 346/514 (67.32%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M D  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPP TGMAQFVS FAEP DPEYAPP  E E P+Q+R RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKG 180
           L KY   +DPN TGDPYKTLFV+RLN+E+SES+IKREFESYGPIKRV L+TD +T KPKG
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180

Query: 181 YAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE 240
           YAFIEYMH RDMKAAYKQADG+KIDGRRVLVDVERGRTVPNWRPRRLGGGLGT+RVGG E
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGE 240

Query: 241 NSQRQSGREQQQSGAPSRSEEP-RVREDRHGERDREKSNERGRDREREKSRERSHERSKD 300
               +   EQQ  G  S+SEEP R RE+R  E+ REK  E  R+R RE S E+  ERS+D
Sbjct: 241 ----EIVGEQQPQGRTSQSEEPSRPREER--EKSREKGKE--RERSRELSHEQPRERSRD 300

Query: 301 RDVREDRHHRD-----RDRTRD--RDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRD 360
           R  RED+HHRD     RDR RD  RDR+R RDRG DRDR RDRDRGRDR     RD DRD
Sbjct: 301 RP-REDKHHRDRDQGGRDRDRDSRRDRDRTRDRG-DRDR-RDRDRGRDR---TSRDHDRD 360

Query: 361 RDRHRDRDRE-RDRDHEGGNADPDHGRSYDRESDYDRIESKYEKDRHGHGDKDRDIDHGE 420
           R R ++RD E  + +HEGG      GRS +R+++Y                       GE
Sbjct: 361 RSRKKERDYEGGEYEHEGG------GRSRERDAEY----------------------RGE 420

Query: 421 AEDGRGWYDQPEHGHRHTDTDHDPQYYDHFEHNRSRGQHDHPEDHRDHDRYDQNDRMEDD 480
            E+ RG+Y+         D   D   Y H                    RYD+ +  EDD
Sbjct: 421 PEETRGYYE---------DDQGDTDRYSH--------------------RYDKME--EDD 425

Query: 481 YHYECDTSESHDREKSRDLNHEYRRSERSHSREY 506
           + YE                 EY+RS+RS SREY
Sbjct: 481 FRYE----------------REYKRSKRSESREY 425

[Close]
BLAST of Sed0005805 vs. TAIR 10
Match: AT3G50670.2 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 266.5 bits (680), Expect = 4.2e-71
Identity = 130/176 (73.86%), Postives = 147/176 (83.52%), Query Frame = 0 

Query: 1   MADYNDAFMRNQNAAVQARTKAQNRASVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEFKP 60
           M D  D F+RN NAAVQAR K QNRA+VLQLKL+GQSHPTGLT+NLLKLFEPRPPLE+KP
Sbjct: 1   MGDSGDPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKP 60

Query: 61  PPEKRKCPPLTGMAQFVSKFAEPDDPEYAPPVQESETPAQRRARIHMLKIEKGAEKVAEE 120
           PPEKRKCPP TGMAQFVS FAEP DPEYAPP  E E P+Q+R RIH L++EKG EK AE+
Sbjct: 61  PPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAED 120

Query: 121 LPKYLERDDPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTG 177
           L KY   +DPN TGDPYKTLFV+RLN+E+SES+IKREFESYGPIKRV     ++ G
Sbjct: 121 LKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAG 176

[Close]
BLAST of Sed0005805 vs. TAIR 10
Match: AT2G43370.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-10
Identity = 93/283 (32.86%), Postives = 127/283 (44.88%), Query Frame = 0 

Query: 129 DPNVTGDPYKTLFVARLNFETSESRIKREFESYGPIKRVRLITDNVTGKPKGYAFIEYMH 188
           D    GDPY TLFV RL+  T+E  ++     YG IK +RL+   VTG  +GY F+EY  
Sbjct: 55  DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114

Query: 189 KRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGL------GTTRVGGEENS 248
           +++M  AY+ A    IDGR ++VD  R + +P W PRRLGGGL      G  R GG +  
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRDRP 174

Query: 249 QR-------------------QSGREQQQSGAPSRSEEPRVREDRHGERDREKSNERGRD 308
            R                     GR   ++  PS         DR  E  REKS+    +
Sbjct: 175 FRAPLRPIPHEDLKKLGIQLPPEGRYMSRTQIPSPPRRKGSVSDREEEYYREKSSVEREE 234

Query: 309 REREKSRERSHERSKDRDVREDRHHRDRDRTRDRDRE---RERDRGYDRDRTRD-RDR-G 368
             +E+S  RS+        R   H     R R +DRE   RE  R   ++R R   DR G
Sbjct: 235 EFKERSSLRSYHSH-----RSSAHTHSSHRRRSKDREECSREESRSDRKERARGMEDRYG 294

Query: 369 RDRGR--DYERDRDRDRDRHRDRDRERDRDHEGGNADPDHGRS 380
            ++G     +R +  + DR R R +     H   +   DH  S
Sbjct: 295 DNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSYSQDHHSS 332

[Close]
BLAST of Sed0005805 vs. TAIR 10
Match: AT5G53440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-06
Identity = 81/197 (41.12%), Postives = 110/197 (55.84%), Query Frame = 0 

Query: 239 EENSQRQSGREQQQSGAPSRS---EEPRVREDRHGERDREKSNERGRDREREKSRERSHE 298
           EE   +Q G ++Q+   P++     + ++  D   ++ + + N+ G + + E       E
Sbjct: 246 EEEDIKQKG-DKQRDDRPTKEHLRSDEKLTRDESKKKSKFQDNDHGHEPDSELDGYHERE 305

Query: 299 RSKDRDVREDRHHRDRDRTRDRDRERERDRGYDRDRTRDRDRGRDRGRDYERDRDRDRDR 358
           R++D D   DR+ RDR+RTRDRDR+ ERDR  DRDR RDR+R RDR RDYE DR  DRD 
Sbjct: 306 RNRDYDRESDRNERDRERTRDRDRDYERDR--DRDRDRDRERDRDR-RDYEHDRYHDRDW 365

Query: 359 HRDRDRERDRDHEGGNADPDHGRSYDRESDY--DRIESKYEKDRHGHGDKDRDIDHGEAE 418
            RDR R+RDRDHE    D  H R  DR  DY  D   SK +++R    D DRD+   + +
Sbjct: 366 DRDRSRDRDRDHE---RDRTHDREKDRSRDYYHDGKRSKSDRER----DNDRDVSRLDDQ 425

Query: 419 DGRGWYDQPEHGHRHTD 431
            GR  Y     G R  D
Sbjct: 426 SGR--YKDRRDGRRSPD 429

The following BLAST results are available for this feature:
BLAST of Sed0005805 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022132461.17.9e-23788.87U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia][more]
XP_038881482.14.3e-23589.45U1 small nuclear ribonucleoprotein 70 kDa [Benincasa hispida][more]
XP_023517571.17.4e-23588.33U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita pepo subsp. pepo] >XP_... [more]
XP_022962873.16.2e-23488.33U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita moschata] >XP_02296287... [more]
XP_023003041.15.3e-23387.74U1 small nuclear ribonucleoprotein 70 kDa-like [Cucurbita maxima] >XP_023003042.... [more]
BLAST of Sed0005805 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q424043.7e-12058.75U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU... [more]
Q66II81.0e-6143.13U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp... [more]
Q1RMR22.6e-5742.69U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 ... [more]
P086211.4e-5542.33U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=... [more]
Q623762.4e-5541.61U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE... [more]
BLAST of Sed0005805 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BSC43.8e-23788.87U1 small nuclear ribonucleoprotein 70 kDa OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1HIB13.0e-23488.33U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1KS722.6e-23387.74U1 small nuclear ribonucleoprotein 70 kDa-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A1S3B1S26.3e-23288.09U1 small nuclear ribonucleoprotein 70 kDa OS=Cucumis melo OX=3656 GN=LOC10348504... [more]
A0A0A0KGZ12.0e-23087.55RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G502610 PE=4 SV... [more]
BLAST of Sed0005805 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G50670.12.6e-12158.75U1 small nuclear ribonucleoprotein-70K [more]
AT3G50670.24.2e-7173.86U1 small nuclear ribonucleoprotein-70K [more]
AT2G43370.13.2e-1032.86RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G53440.12.1e-0641.12unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 139..212
e-value: 1.0E-23
score: 94.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 140..209
e-value: 8.2E-19
score: 67.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 138..216
score: 18.018063
IPR022023U1 small nuclear ribonucleoprotein of 70kDa N-terminalPFAMPF12220U1snRNP70_Ncoord: 41..129
e-value: 1.3E-16
score: 61.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 126..250
e-value: 7.0E-37
score: 128.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..505
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..258
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..505
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 1..355
NoneNo IPR availablePANTHERPTHR13952:SF22SUBFAMILY NOT NAMEDcoord: 1..355
IPR034143snRNP70, RNA recognition motifCDDcd12236RRM_snRNP70coord: 137..227
e-value: 5.71386E-54
score: 174.742
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 127..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005805.1Sed0005805.1mRNA
Sed0005805.2Sed0005805.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0003676 nucleic acid binding