Sed0005668 (gene) Chayote v1

Overview


Name	Sed0005668
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Charged multivesicular body protein 1
Location	LG06: 655883 .. 656961 (+)
RNA-Seq Expression	Sed0005668
Synteny	Sed0005668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGCCCCACACGTGCGACGAAAATCAGAGAATCAACGCGGTGAAGCAAGTTCTCATCGTTTCATTCTCCAAACCCTAGAATTTCCAATTGAATTTCTCTGTATCTGATTTCATTTTCTTCTGTAAATTCATTCCTGTTGCGATCATGGGTAACGCAGAGAAATTGATGAACCAGATTATGGAATTGAAATTCACAGCGAAATCCCTGCAACGCCAATCGAGGAAGTGCGAAAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGAGCTCGAATTTACGCCGAGAACGCGATCCGGAAGCGAACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCGGTGGTGGCTCGCCTCGATACGCAGGCGAAGATGTCCGTTATAAACAAGTCCATGGGCTCGATCGTGAAATCCTTGGAAAGTACTTTGGCGACTGGGAATTTGCAGAAGATGTCGGAGACTATGGATCAATTTGAGAGGCAGTTTGTGAATATGGAGGTTCAAGCTGAGTTTATGGAGAATGCGATGGCGGGTTCGACCTCGCTGTCGACTCCGGAAGGAGAGGTTAACAGTTTGATGCAACAGGTGGCTGATGACTATGGATTGGAGGTTTCTGTGGGTCTTCCTCAGCCGGCTGGTCATGCGGTGCCCGCCCGGGAGACCGAGAAAGTCGACGAGGACGACTTGTCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAAACAATTTTATATTAGAATGGTATCCTATTATCATGTTTCTGCCATTTGTAAAATCTACGTATTTCTTTACTGACTTATAATACTAGAACTCATAATGTGTATAAATTTGAAGTACTTGTTATATGATATGCTTAGTGCGTACTGCTCTGCTTATTATAATTTGCAACTGATGACTTTTCAAAAATAATATTTCCCCCCTTCATGTATATTTGAGTATTTGGGTTGATATCTCATACCTTTTGGGATTTGTTCTGGAAATAACATGGGCTAACCCTACTTCCCCTTTTAAAGATTATTGCCTTTTCTTCTCTTGTGGCCCAC

mRNA sequence

GTGAGCCCCACACGTGCGACGAAAATCAGAGAATCAACGCGGTGAAGCAAGTTCTCATCGTTTCATTCTCCAAACCCTAGAATTTCCAATTGAATTTCTCTGTATCTGATTTCATTTTCTTCTGTAAATTCATTCCTGTTGCGATCATGGGTAACGCAGAGAAATTGATGAACCAGATTATGGAATTGAAATTCACAGCGAAATCCCTGCAACGCCAATCGAGGAAGTGCGAAAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGAGCTCGAATTTACGCCGAGAACGCGATCCGGAAGCGAACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCGGTGGTGGCTCGCCTCGATACGCAGGCGAAGATGTCCGTTATAAACAAGTCCATGGGCTCGATCGTGAAATCCTTGGAAAGTACTTTGGCGACTGGGAATTTGCAGAAGATGTCGGAGACTATGGATCAATTTGAGAGGCAGTTTGTGAATATGGAGGTTCAAGCTGAGTTTATGGAGAATGCGATGGCGGGTTCGACCTCGCTGTCGACTCCGGAAGGAGAGGTTAACAGTTTGATGCAACAGGTGGCTGATGACTATGGATTGGAGGTTTCTGTGGGTCTTCCTCAGCCGGCTGGTCATGCGGTGCCCGCCCGGGAGACCGAGAAAGTCGACGAGGACGACTTGTCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAAACAATTTTATATTAGAATGGTATCCTATTATCATGTTTCTGCCATTTGTAAAATCTACGTATTTCTTTACTGACTTATAATACTAGAACTCATAATGTGTATAAATTTGAAGTACTTGTTATATGATATGCTTAGTGCGTACTGCTCTGCTTATTATAATTTGCAACTGATGACTTTTCAAAAATAATATTTCCCCCCTTCATGTATATTTGAGTATTTGGGTTGATATCTCATACCTTTTGGGATTTGTTCTGGAAATAACATGGGCTAACCCTACTTCCCCTTTTAAAGATTATTGCCTTTTCTTCTCTTGTGGCCCAC

Coding sequence (CDS)

ATGGGTAACGCAGAGAAATTGATGAACCAGATTATGGAATTGAAATTCACAGCGAAATCCCTGCAACGCCAATCGAGGAAGTGCGAAAAGGAGGAGAAATCCGAGAAGCTCAAGATCAAGAAGGCTATGGAGAAGGGAAACATGGACGGAGCTCGAATTTACGCCGAGAACGCGATCCGGAAGCGAACGGAGCAGATGAACTATCTCCGACTCGCTTCGCGGCTCGATGCGGTGGTGGCTCGCCTCGATACGCAGGCGAAGATGTCCGTTATAAACAAGTCCATGGGCTCGATCGTGAAATCCTTGGAAAGTACTTTGGCGACTGGGAATTTGCAGAAGATGTCGGAGACTATGGATCAATTTGAGAGGCAGTTTGTGAATATGGAGGTTCAAGCTGAGTTTATGGAGAATGCGATGGCGGGTTCGACCTCGCTGTCGACTCCGGAAGGAGAGGTTAACAGTTTGATGCAACAGGTGGCTGATGACTATGGATTGGAGGTTTCTGTGGGTCTTCCTCAGCCGGCTGGTCATGCGGTGCCCGCCCGGGAGACCGAGAAAGTCGACGAGGACGACTTGTCGAGGCGGCTTGCTGAGCTTAAGGCCAGAGGGTAA

Protein sequence

MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQFERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPARETEKVDEDDLSRRLAELKARG

Homology

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BLAST of Sed0005668 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-96
Identity = 195/203 (96.06%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. NCBI nr
Match: KAE8651298.1 (hypothetical protein Csa_002473 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 1.4e-96
Identity = 195/203 (96.06%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 194/203 (95.57%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMS INK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            RETEK+DEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 361.7 bits (927), Expect = 4.2e-96
Identity = 194/203 (95.57%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVN+LMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            RETEK+DEDDLSRRLAELKARG
Sbjct: 181 TRETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. NCBI nr
Match: XP_038878614.1 (ESCRT-related protein CHMP1B-like [Benincasa hispida])

HSP 1 Score: 361.7 bits (927), Expect = 4.2e-96
Identity = 194/203 (95.57%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMS INKSMGSIVKSLE+TLATGNLQKMSETMD+
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLETTLATGNLQKMSETMDR 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-92
Identity = 181/203 (89.16%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN +KLMNQI +LKFT+KSLQRQSRKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+ I KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            +  EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.2e-90
Identity = 176/203 (86.70%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN +KLMNQI ELKFT+KSLQRQ+RKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+ I KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            +  EKV+EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 8.2e-87
Identity = 178/205 (86.83%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKLM QI +LKFT+KSLQRQ+RKCEKEEK +KLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTE MNYLRLASRLDAVVARLDTQAKM VI KSM +IVKSL+S LATGNLQKMSETMD 
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FERQFVNMEVQAEFME AMAGSTSLSTPE EVNSLMQQVADDYGLEVSVGLPQ A HA+P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

Query: 181 -ARETEK-VDEDDLSRRLAELKARG 204
            A+E EK VDEDDLSRRLAELKARG
Sbjct: 181 AAKEKEKAVDEDDLSRRLAELKARG 205

[Close]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.6e-44
Identity = 92/194 (47.42%), Postives = 149/194 (76.80%), Query Frame = 0


Query: 9   NQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNY 68
           NQ+ +LKFT+K L++QS+K E+ EK++K+K+KKA+E+GNMDGARIYA+NAIR++ + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQFERQFVNM 128
           LRLASR+DAV +R++T  +M  +  SM +IVKS+E ++   +L+K+++ MDQFERQF ++
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDL 122

Query: 129 EVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVPARETEKVD 188
           +VQ+ ++ENAM  +T+LSTP  +V+ L+ QVAD++GL V + +      + P+ + ++ +
Sbjct: 123 DVQSVYVENAMNQTTTLSTPADQVDLLISQVADEHGLNVGMQM-----GSAPSEKVQQGE 182

Query: 189 EDDLSRRLAELKAR 203
            D+L+ RL  LK +
Sbjct: 183 TDELTERLNRLKQK 191

[Close]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot
Match: Q5E994 (Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-43
Identity = 95/200 (47.50%), Postives = 147/200 (73.50%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           M N EK    +  LKF AK L R ++KC+KEEK+EK KIKKA++KGNM+ ARI+AENAIR
Sbjct: 1   MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           ++ + +N+LR+++R+DAV AR+ T   M  + KSM  +VKS+++TL T NL+K+S  MD+
Sbjct: 61  QKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDK 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE QF  ++VQ + ME+ M+ +T+L+TP+G+V+ L+Q++AD+ GL++++ LPQ    +V 
Sbjct: 121 FEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGLDLNMELPQGQTGSV- 180

Query: 181 ARETEKVDEDDLSRRLAELK 201
                  ++D+LS+RLA L+
Sbjct: 181 GTSVASAEQDELSQRLARLR 196

[Close]

BLAST of Sed0005668 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.9e-97
Identity = 195/203 (96.06%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.9e-97
Identity = 195/203 (96.06%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy TrEMBL
Match: A0A1S3BIE8 (ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.9e-97
Identity = 195/203 (96.06%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRL+SRLDAVVARLDTQAKMS INKSMGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPA HAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
           ARETEK+DEDDLSRRLAELKARG
Sbjct: 181 ARETEKIDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.1e-97
Identity = 194/203 (95.57%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMS INK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            RETEK+DEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. ExPASy TrEMBL
Match: A0A6J1GD16 (ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.1e-97
Identity = 194/203 (95.57%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN EKL+NQIMELKFTAKSLQRQ+RKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KRTEQMNYLRLASRLDAVVARLDTQAKMS INK+MGSIVKSLESTLATGNLQKMSETMDQ
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            RETEK+DEDDL+RRLAELKARG
Sbjct: 181 TRETEKIDEDDLTRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 340.5 bits (872), Expect = 9.3e-94
Identity = 181/203 (89.16%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN +KLMNQI +LKFT+KSLQRQSRKCEKEEK+EKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRLASRLDAVVARLDTQAKM+ I KSM +IVKSLES+LATGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            +  EKVDEDDLSRRLAELKARG
Sbjct: 181 TKTEEKVDEDDLSRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 334.0 bits (855), Expect = 8.7e-92
Identity = 176/203 (86.70%), Postives = 193/203 (95.07%), Query Frame = 0


Query: 1   MGNAEKLMNQIMELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60
           MGN +KLMNQI ELKFT+KSLQRQ+RKCEKEE+SEKLK+KKA+EKGNMDGARIYAENAIR
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQKMSETMDQ 120
           KR+EQMNYLRL+SRLDAVVARLDTQAKM+ I KSM +IVKSLES+L TGNLQKMSETMD 
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 FERQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180
           FE+QFVNMEVQAEFM+NAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHA+P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

Query: 181 ARETEKVDEDDLSRRLAELKARG 204
            +  EKV+EDDL+RRLAELKARG
Sbjct: 181 TKTEEKVEEDDLTRRLAELKARG 203

[Close]

BLAST of Sed0005668 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.2e-05
Identity = 50/203 (24.63%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 13  ELKFTAKSLQRQSRKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRKRTEQMNYLRLA 72
           +L+   ++++RQ R  +KEE++ +  IK+A ++ +M  A+  A+  +  R          
Sbjct: 24  KLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENK 83

Query: 73  SRLDAVVARLDTQAKMSVINKSMGSIVKSLESTLATGNLQK---MSETMDQFERQFVNME 132
           ++++++   L    +   I +++G + KS E      NL K   M+ TM +F ++     
Sbjct: 84  AQMNSISMHL---GESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAG 143

Query: 133 VQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLP---------QPAGHAVP 192
           V  EF+  A+  +      E E++  + +V      E +  LP          PA  A  
Sbjct: 144 VIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKAST 203

Query: 193 ARETEKVDED-DLSRRLAELKAR 203
           +RE E V E  D    L E++AR
Sbjct: 204 SREEEAVAEGVDDEEELEEIRAR 223

The following BLAST results are available for this feature:

BLAST of Sed0005668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146833.1	1.4e-96	96.06	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]
KAE8651298.1	1.4e-96	96.06	hypothetical protein Csa_002473 [Cucumis sativus]	[more]
XP_022949550.1	1.9e-96	95.57	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_022148096.1	4.2e-96	95.57	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]
XP_038878614.1	4.2e-96	95.57	ESCRT-related protein CHMP1B-like [Benincasa hispida]	[more]

BLAST of Sed0005668 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	1.3e-92	89.16	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	1.2e-90	86.70	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	8.2e-87	86.83	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
O96552	6.6e-44	47.42	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]
Q5E994	3.3e-43	47.50	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1	[more]

BLAST of Sed0005668 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1A1	6.9e-97	96.06	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	6.9e-97	96.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]
A0A1S3BIE8	6.9e-97	96.06	ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 S...	[more]
A0A6J1KC50	9.1e-97	95.57	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]
A0A6J1GD16	9.1e-97	95.57	ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 ...	[more]

BLAST of Sed0005668 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	9.3e-94	89.16	SNF7 family protein	[more]
AT1G17730.1	8.7e-92	86.70	vacuolar protein sorting 46.1	[more]
AT5G22950.1	6.2e-05	24.63	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 182..202
None	No IPR available	COILS	Coil	Coil	coord: 4..31
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	GENE3D	6.10.140.1230		coord: 2..173 e-value: 3.3E-39 score: 136.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..203
None	No IPR available	PANTHER	PTHR10476:SF57	ESCRT-RELATED PROTEIN CHMP1A-RELATED	coord: 5..203
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 11..172 e-value: 1.7E-11 score: 44.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005668.1	Sed0005668.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032509	endosome transport via multivesicular body sorting pathway
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0015031	protein transport
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005771	multivesicular body