Sed0005642 (gene) Chayote v1

Overview


Name	Sed0005642
Type	gene
Organism	Sechium edule (Chayote v1)
Description	S locus-related glycoprotein 1 binding pollen coat
Location	LG05: 40050683 .. 40051434 (+)
RNA-Seq Expression	Sed0005642
Synteny	Sed0005642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACTAAATTCTCATTCCCACATCATTTTGGTTGCTCTTATATTTGCAGGTTCTTCATTTCTTGTTCGTATCATATATTATTGTATGAGTTTCAAATTAATATTTTAGGCCCCATTTGATAATCATTTTGTTTTTCGTTTTTTGTTTATGAAATTTAAGCCTACAACAATGACCCTTTTTTTATTTGGATATATACATCTTACCTATATATTAATAAAAAAAAAAATCAAAATTTGGAAAAAAAAAGTAGCTTCCAAAAGCTTGTCTTTGTTTTTGAAATTTGATTAGTATTTTCCTACTTTTTAAAGGAAATATGAATACATCGTAGAAAAGATGGAGCACATGGTAAAAAAAATTGAGTAAAAATAAACTTAAATTTCATAAACAAAAAATCAAAGTCATCAAACAGGGCCTTAGTCAGTATGGTTTTACATTTTATTGTATGAGTTTCAAATAATTTCTTTGTTACCATTCTAACAAGCCTTTGACAAAATGTTATAAAAATGTATTGTTATTTATGACATTTTTTTGGTTGTTGTTGTTGTTGTATAGTTGCGTTGATTTTGGCTGCTGAAGAAGTTTCAGGTGCCCAAAGATGCCAGGAAATATTGAACAACAGCGGTTGCGTATTGAACGATTGTGGACAGAAATGTTGGGAGAAACATCATTCTATGTCGTTTAAATGCATTCCCACCGATCCTCCCCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGCTTAA

mRNA sequence

ATGGCAAAACTAAATTCTCATTCCCACATCATTTTGGTTGCTCTTATATTTGCAGTTGCGTTGATTTTGGCTGCTGAAGAAGTTTCAGGTGCCCAAAGATGCCAGGAAATATTGAACAACAGCGGTTGCGTATTGAACGATTGTGGACAGAAATGTTGGGAGAAACATCATTCTATGTCGTTTAAATGCATTCCCACCGATCCTCCCCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGCTTAA

Coding sequence (CDS)

ATGGCAAAACTAAATTCTCATTCCCACATCATTTTGGTTGCTCTTATATTTGCAGTTGCGTTGATTTTGGCTGCTGAAGAAGTTTCAGGTGCCCAAAGATGCCAGGAAATATTGAACAACAGCGGTTGCGTATTGAACGATTGTGGACAGAAATGTTGGGAGAAACATCATTCTATGTCGTTTAAATGCATTCCCACCGATCCTCCCCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGCTTAA

Protein sequence

MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMSFKCIPTDPPQTIYACFCFFDCA

Homology

[Close]

BLAST of Sed0005642 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-21
Identity = 44/62 (70.97%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 20 ALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMSFKCIPTDPPQTIYACFCFF 79
          AL+LA+++VS AQRCQ++L N+GC LNDCG+KCWEKHH++S +CIPT+P QTIYAC+CFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 80 DC 82
          DC
Sbjct: 61 DC 62

[Close]

BLAST of Sed0005642 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMS 60
          M KL S S I+ +AL  AVA+IL  +     +RCQ+ L ++GC L DCGQKCWEKHH  S
Sbjct: 1  MTKLYS-SWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDAS 60

Query: 61 FKCIPTDPPQTIYACFCFFDC 82
           +CIPTDP QTIYAC+CF++C
Sbjct: 61 HQCIPTDPGQTIYACYCFYNC 80

[Close]

BLAST of Sed0005642 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.0e-18
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMS 60
          M KL S S I+ + LI AVA+I +  + + A RCQ+IL NSGC L DCGQKCWEKHH  S
Sbjct: 1  MTKLYS-SWILTIVLIIAVAMI-SIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 FKCIPTDPPQTIYACFCFFDC 82
           +CIPTDP QTIYAC+CF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of Sed0005642 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 32  QRCQEILNNSGCVLNDCGQKCWEKHHSMSFKCIPTDPPQTIYACFCFFDC 82
           +RC E L  SGC L+DCG+KCWEKHH   +KCI  +  QT YAC+C F+C
Sbjct: 64  KRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

[Close]

BLAST of Sed0005642 vs. NCBI nr
Match: XP_018498384.1 (PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 6  SHSHIILVALIFAVALILAAEEVSGAQ-RCQEILNNSGCVLNDCGQKCWEKHHSMSFKCI 65
          S  H IL+ LIF+VAL       + AQ RCQE+L  S C L DCG+KC+ KHH     CI
Sbjct: 5  SFVHFILLVLIFSVALKCGNLRQTYAQKRCQELLYPSNCTLLDCGEKCFNKHHDQGHTCI 64

Query: 66 PTDPPQTIYACFCFFDC 82
            +P  T YAC+C ++C
Sbjct: 65 -ANPAGTDYACYCIYNC 80

[Close]

BLAST of Sed0005642 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 8  SHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMSFKCIPTD 67
          S II  ALIFAVAL+LA+++VS AQRCQ++L N+GC LNDCG+KCWEKHH++S +CIPT+
Sbjct: 4  SRIICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTN 63

Query: 68 PPQTIYACFCFFDC 82
          P QTIYAC+CFFDC
Sbjct: 64 PSQTIYACYCFFDC 77

[Close]

BLAST of Sed0005642 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMS 60
          M KL S S I+ +AL  AVA+IL  +     +RCQ+ L ++GC L DCGQKCWEKHH  S
Sbjct: 1  MTKLYS-SWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDAS 60

Query: 61 FKCIPTDPPQTIYACFCFFDC 82
           +CIPTDP QTIYAC+CF++C
Sbjct: 61 HQCIPTDPGQTIYACYCFYNC 80

[Close]

BLAST of Sed0005642 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-18
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMS 60
          M KL S S I+ + LI AVA+I +  + + A RCQ+IL NSGC L DCGQKCWEKHH  S
Sbjct: 1  MTKLYS-SWILTIVLIIAVAMI-SIPQGALAARCQDILYNSGCTLADCGQKCWEKHHEAS 60

Query: 61 FKCIPTDPPQTIYACFCFFDC 82
           +CIPTDP QTIYAC+CF+ C
Sbjct: 61 RQCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of Sed0005642 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MAKLNSHSHIILVALIFAVALILAAEEVSGAQRCQEILNNSGCVLNDCGQKCWEKHHSMS 60
          MA L+S   + ++ +IFAV++IL  +  S A +CQ+ L   GC+ ++CGQKC + HH  +
Sbjct: 18 MANLSSF-RVAIIIVIFAVSMILVPQGTS-ALKCQDRLYVGGCIQHECGQKCSQLHHGGT 77

Query: 61 FKCIPTDPPQTIYACFCFFDC 82
           KCI TDP  T YAC+CF++C
Sbjct: 78 SKCISTDPTFTKYACYCFYNC 96

[Close]

BLAST of Sed0005642 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 32  QRCQEILNNSGCVLNDCGQKCWEKHHSMSFKCIPTDPPQTIYACFCFFDC 82
           +RC E L  SGC L+DCG+KCWEKHH   +KCI  +  QT YAC+C F+C
Sbjct: 64  KRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

The following BLAST results are available for this feature:

BLAST of Sed0005642 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649772.1	5.2e-21	70.97	hypothetical protein Csa_012405, partial [Cucumis sativus]	[more]
KAA0042348.1	3.1e-18	58.02	S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T...	[more]
KGN64987.1	7.0e-18	61.73	hypothetical protein Csa_022748 [Cucumis sativus]	[more]
BBH07492.1	4.5e-09	58.00	hypothetical protein Prudu_019451 [Prunus dulcis]	[more]
XP_018498384.1	1.0e-08	48.05	PREDICTED: putative defensin-like protein 165 [Pyrus x bretschneideri]	[more]

BLAST of Sed0005642 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2R3	8.3e-25	71.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1	[more]
A0A5A7THQ7	1.5e-18	58.02	S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LVZ5	3.4e-18	61.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1	[more]
A0A0A0KYP7	1.2e-10	45.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1	[more]
A0A4Y1RT05	2.2e-09	58.00	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1	[more]

BLAST of Sed0005642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 28..81 e-value: 5.7E-8 score: 33.1
IPR010851	Defensin-like protein	PANTHER	PTHR33830	DEFENSIN-LIKE PROTEIN 184-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33830:SF21	DEFENSIN-LIKE PROTEIN 140-RELATED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005642.1	Sed0005642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044419	biological process involved in interspecies interaction between organisms