Sed0005638 (gene) Chayote v1

Overview


Name	Sed0005638
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosystem I reaction center subunit VI, chloroplastic-like
Location	LG05: 28634389 .. 28636198 (-)
RNA-Seq Expression	Sed0005638
Synteny	Sed0005638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGCCGGAAGCTCCTTCGCCGGAACCAAGCTGCCCATCAGGCCCTCTCGCCAGAGCTTCACACCCAAAAACTTCAAGTACCAAAAACAATTCTCATAATTGGTTCTTTTTTTTTGTTCATTTTGGTTTGGAAATTTGATGAAACTTGTGGGATTTTTGTTTTGTTTACTCTGTTCTTAGGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGCTCTGATGCTCCTTCACCTTACAATTCTCTTCAGGTTTGTCATTTATTTTGTTGCTTTGATGAATTTGAAACATGGGTCAAAAGAATTTTTTTTGTTTACTTTTGAACTTGTTCAAATGGGTTGAATCAATTGTTAAACGTTTTGAATGACCTAATATCAAGCTTGTATTTTGTTTTCCATGTGGACGAAGTTAACACACACTTAGTGAATTAAGTAAATTTGTTTATTATTCTTCTCGTTCTTATATTCTTTGTTTGTCGATATTTTTATCAATCCTAATTGAACTTTTGGACCGATTTGTATCCATCATGAAGTGACCTATTGGTTAAGGGGGTCTTCAGGAACTTAGAGTTTGATGGATTTAATCCATGATGGTCTCCGGCGCTAATCTAGGTAATATTAATTGGGGGCCAAAATTATAAGGGAACGTCAATAGTAATGGTTTTATTTATAAAAAAATATACTAAAAAAAATTGGGGGGCCATGACAAAAATGTATATTTAATATAATGTAGAATTATTTATACATATAAAATACATCATTTTCAAAATTTTGAGGGGACCATGGCCTCTCTTGGTCTCCGTTATTGTTCTTCAATGATGGTTACTTACCTGTTAGTTAATTTTCTACGAGTTTACTGGACGTGTTGTAGGACTAGACATTATGTTCGTTAGAATAGTCGAGGTGTGTTGTTAAGTAATCTTAGCAACATGCTCTGATTATAAGCACTCTTTTAAGTGCTTGATGACAAATTACTCTGATGTTTACCTTTGATTATGAGAGTGTTTGGTTTTACTATCAAGTCAAAAATGCTATTGGCGCTTTCTCATGAAGGATTTAAGCGTTCTTTTGCCTTTTCCATTTACACTTATAAAACACTTCAATTATAAAGGTTAAAAATGAAGTAATATTAGCTTATGTTCTATTTTTTTTTTTTTTTTTTTAAAGTAATCTTAGCTTATGTTCGTTGACTTTTGCAATACTCACAAGTCACAGGTAATTCTCCTAAGAATCATTATAGTCTTAATGAAGTGTTTTATAAGTTCTTGATAGCACATAGCTTTGATGTTCCATTTCGAACCGTACAATTTTTCTTATAAAGGATATAAATGTTTCTTTTACTTTTCCATTATCACCTACAGAACACTTCAATTCAAATATAATGATTTTGAGGGGAATTATTTGAAGTGTCATGGGTAGAATATATCCATTTCTAACATGTTGTAAAGGTTTAGAGTTGTGAGACTGATGTCTCTGTTGCTGCTTGGTTGGATTGAACTTGATATGATTTCTGTACATTTATAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTAATTGGTGGTGGTGCCACTCTAACTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCAATCAAGAAGGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

mRNA sequence

ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGCCGGAAGCTCCTTCGCCGGAACCAAGCTGCCCATCAGGCCCTCTCGCCAGAGCTTCACACCCAAAAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGCTCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTAATTGGTGGTGGTGCCACTCTAACTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCAATCAAGAAGGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

Coding sequence (CDS)

ATGGCTTCCTTAGCAACACTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGCCGGAAGCTCCTTCGCCGGAACCAAGCTGCCCATCAGGCCCTCTCGCCAGAGCTTCACACCCAAAAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGCTCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTAATTGGTGGTGGTGCCACTCTAACTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCAATCAAGAAGGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Homology

[Close]

BLAST of Sed0005638 vs. NCBI nr
Match: XP_038902740.1 (photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AGTKLP+RPSRQS +PKN+KAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLSPKNYKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. NCBI nr
Match: XP_011651500.1 (photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58074.1 hypothetical protein Csa_023410 [Cucumis sativus])

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 136/144 (94.44%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AG KLP+RPSRQ+F PKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. NCBI nr
Match: XP_022955723.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata] >XP_022979288.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AGTKLP+RPSRQSF PK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL Y+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. NCBI nr
Match: XP_022153665.1 (photosystem I reaction center subunit VI, chloroplastic-like [Momordica charantia])

HSP 1 Score: 274.2 bits (700), Expect = 6.2e-70
Identity = 135/144 (93.75%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGLAGSS AGT+LP++PSRQSF PKNF+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. NCBI nr
Match: KAG7018324.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 135/144 (93.75%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AGTKLP+RP+RQSF PK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL Y+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot
Match: P22179 (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.8e-63
Identity = 118/144 (81.94%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP T+KGLAGSS AGTKL I+P+RQSF   N ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot
Match: Q9SUI6 (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 116/145 (80.00%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGL GSS AG KL I+PSRQSF  K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot
Match: O04006 (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris OX=3711 GN=PSAH PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQPVT-VKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP + VKGL GSS  G KL I+PSRQSF PK+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot
Match: Q9SUI7 (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.1e-59
Identity = 113/145 (77.93%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGL GSS AG KL I+PSR SF PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot
Match: A2Y7D9 (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PSAH PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.2e-53
Identity = 106/143 (74.13%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 4   LATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSF--TPKNFKAGAVVAKYGDKSVYFDLE 63
           +A+L AVQPV VKGLAGSS +G KL +RPS ++   T +  +A AVVAKYG+KSVYFDLE
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA-AVVAKYGEKSVYFDLE 60

Query: 64  DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSATA 123
           D+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLL+GGG+ + Y SA+A
Sbjct: 61  DIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASA 120

Query: 124 PDDVLPIKKGPQLPPKLGPRGKI 145
             D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 SPDLLPIKKGPQLPPTPGPRGKI 142

[Close]

BLAST of Sed0005638 vs. ExPASy TrEMBL
Match: A0A6J1IVS0 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479056 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AGTKLP+RPSRQSF PK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL Y+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy TrEMBL
Match: A0A0A0LAW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AG KLP+RPSRQ+F PKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy TrEMBL
Match: A0A6J1GUS6 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457635 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGL GSS AGTKLP+RPSRQSF PK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL Y+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy TrEMBL
Match: A0A6J1DHG2 (photosystem I reaction center subunit VI, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111021119 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.0e-70
Identity = 135/144 (93.75%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGLAGSS AGT+LP++PSRQSF PKNF+AGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVAVKGLAGSSIAGTRLPLKPSRQSFRPKNFRAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGGATL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. ExPASy TrEMBL
Match: A0A6J1K6V8 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492832 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70
Identity = 135/144 (93.75%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPV VKGL GSS AGTKLP+RPSRQ+ TPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVAVKGLGGSSLAGTKLPLRPSRQTLTPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLL+GGG+TL YFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGSTLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Sed0005638 vs. TAIR 10
Match: AT1G52230.1 (photosystem I subunit H2 )

HSP 1 Score: 230.3 bits (586), Expect = 9.6e-61
Identity = 116/145 (80.00%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGL GSS AG KL I+PSRQSF  K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Sed0005638 vs. TAIR 10
Match: AT3G16140.1 (photosystem I subunit H-1 )

HSP 1 Score: 228.4 bits (581), Expect = 3.6e-60
Identity = 113/145 (77.93%), Postives = 127/145 (87.59%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLAGSSFAGTKLPIRPSRQSFTPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGL GSS AG KL I+PSR SF PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLIGGGATLTYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL++GGG+ LTY SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

The following BLAST results are available for this feature:

BLAST of Sed0005638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902740.1	2.8e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]	[more]
XP_011651500.1	3.6e-70	94.44	photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58...	[more]
XP_022955723.1	3.6e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata...	[more]
XP_022153665.1	6.2e-70	93.75	photosystem I reaction center subunit VI, chloroplastic-like [Momordica charanti...	[more]
KAG7018324.1	8.1e-70	93.75	Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Sed0005638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22179	5.8e-63	81.94	Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SUI6	1.3e-59	80.00	Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian...	[more]
O04006	1.3e-59	80.00	Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris O...	[more]
Q9SUI7	5.1e-59	77.93	Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian...	[more]
A2Y7D9	7.2e-53	74.13	Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i...	[more]

BLAST of Sed0005638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVS0	1.8e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A0A0LAW4	1.8e-70	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1	[more]
A0A6J1GUS6	1.8e-70	94.44	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1DHG2	3.0e-70	93.75	photosystem I reaction center subunit VI, chloroplastic-like OS=Momordica charan...	[more]
A0A6J1K6V8	3.9e-70	93.75	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]

BLAST of Sed0005638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52230.1	9.6e-61	80.00	photosystem I subunit H2	[more]
AT3G16140.1	3.6e-60	77.93	photosystem I subunit H-1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.220		coord: 98..120 e-value: 6.5E-11 score: 43.7
None	No IPR available	PANTHER	PTHR34787:SF6	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-LIKE	coord: 1..144
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PFAM	PF03244	PSI_PsaH	coord: 7..144 e-value: 3.9E-71 score: 237.0
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PANTHER	PTHR34787	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005638.1	Sed0005638.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I