Sed0005624 (gene) Chayote v1

Overview


Name	Sed0005624
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Aminoacyl-tRNA hydrolase
Location	LG01: 9730163 .. 9731533 (+)
RNA-Seq Expression	Sed0005624
Synteny	Sed0005624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAATCCAGTTTAAGAAACTCCGTTCCTCCGCCGGATGACGACGGAGGAGACCGCCGGCGTTTTGGTTCAGTAAGTTGTGCTTCGGAGACACCTGATCGATTCGTGGCTTCTAGGAATAAAGATGATCCATACAATTTGGAGTACTGTAATCCCGTAGACATCGACTCCATGAACAAGGTAAGTCGAATTTTGAACTCTATTTTTTACTTTTGGTTTCCATCTGAAATATATCGAACTCGAACAATGCGGTATGAATGTACAGTCTACAATCTTGTTTGTTGAAGGTTGACAGATGAACTTCAGTGCTGTGGTTGTGGTTGCTGGTTGATTATTTAGTTTTGTGAAGAACATTCTGTTCATCTCGCTAGTCTTCAATATTACTTCCGTCGAGTGTTCTAACAGTTTGGAAGAAGAATTGATGATTGGAAGTCTTTCTTTACTCTTTTTCCGGTTGGTTTTGTTTTCCGTTTAAGAGTGAGTGTATTTTTGTTATTCCAGATTTCAATCTCCTTTCTAGATTTGAGCTGAAGGTTTCGACGTTTTCACCTAATGTACTTATGGTTTCAAAGAATCTCCATCATACTTGAAAGTCAAGGAGAGCTCAATCACCTTTCATATTTCGGTCATTACATTTTCTTAAATTTTATGGTAGTTTTAAAGTACTTACCATCCGGGAAGTATAGTAACCAACGCCAATACTTTTGGACACTCTATTCGACAATCAAAATTTATTATTCCCTTTTATTATTTTTATTTTTGTTTTTGGATATGTGTTACACTATGGGCACCTCATACGCCAATGACTGACTTCCATAAAAAATAGAATGGAGAAATGAATAAAAGGAAAAAAAGAGAGAATAAAATGAAGAGAAGGTAAGAAGTATTAGTTTGTAACTAAGGAAGTTTGTAACTAAACTAGAACATTTAGGATTTGATATTTAATCATTTTTAAATACCGATGAATCTACCTGTAGTGTCGTGTCCATATCTTGTGTTTCTGTCCATGCTTCTTAGCAGCTTACCATGATTAATGCGAACCCTCCTCATTTCGCACTTACAGAACGATTGAACTACCATTTGGAAACTTTCTTGCCTAGTGAATCATTTATTGTATTATGTACCTCAACTTGTTGAAATTACTGGTGTTATATTATATATCCATTGGTCCCTTACGCCGGTCTGGACTTCGTAATCCCTGAAGTGGGTATTATCATGCTGACTTAATATCAATTCTTTATGTAGACTAATCTCAAGGTGAAGGGAGAAACCCAGATCGTCCGTATACTCTGGGTAGATTTAGAACAACCAGAAAACATTCCAACGCCAACTAGACTGCTGCAGGCAAGGATCAAGCCATTGTCCTAA

mRNA sequence

ATGAGTGAATCCAGTTTAAGAAACTCCGTTCCTCCGCCGGATGACGACGGAGGAGACCGCCGGCGTTTTGGTTCAGTAAGTTGTGCTTCGGAGACACCTGATCGATTCGTGGCTTCTAGGAATAAAGATGATCCATACAATTTGGAGTACTGTAATCCCGTAGACATCGACTCCATGAACAAGACTAATCTCAAGGTGAAGGGAGAAACCCAGATCGTCCGTATACTCTGGGTAGATTTAGAACAACCAGAAAACATTCCAACGCCAACTAGACTGCTGCAGGCAAGGATCAAGCCATTGTCCTAA

Coding sequence (CDS)

ATGAGTGAATCCAGTTTAAGAAACTCCGTTCCTCCGCCGGATGACGACGGAGGAGACCGCCGGCGTTTTGGTTCAGTAAGTTGTGCTTCGGAGACACCTGATCGATTCGTGGCTTCTAGGAATAAAGATGATCCATACAATTTGGAGTACTGTAATCCCGTAGACATCGACTCCATGAACAAGACTAATCTCAAGGTGAAGGGAGAAACCCAGATCGTCCGTATACTCTGGGTAGATTTAGAACAACCAGAAAACATTCCAACGCCAACTAGACTGCTGCAGGCAAGGATCAAGCCATTGTCCTAA

Protein sequence

MSESSLRNSVPPPDDDGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRILWVDLEQPENIPTPTRLLQARIKPLS

Homology

[Close]

BLAST of Sed0005624 vs. NCBI nr
Match: XP_022962062.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 5.6e-09
Identity = 49/117 (41.88%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKD 60
           MSES+  NS PPPDD                 D  D    GSV              NKD
Sbjct: 51  MSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAVWLNKD 110

Query: 61  DPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           DP+  EYC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 111 DPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWI--EQPENIPT 165

[Close]

BLAST of Sed0005624 vs. NCBI nr
Match: XP_038884124.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 7.3e-09
Identity = 48/120 (40.00%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASR 60
           MS+S+  NSVPPPDD G                     D    GSV              
Sbjct: 51  MSQSAETNSVPPPDDGGAKAEEIADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL 110

Query: 61  NKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           NKDDP+  +YC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 111 NKDDPHTSDYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWI--EQPENIPT 168

[Close]

BLAST of Sed0005624 vs. NCBI nr
Match: XP_023546189.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-09
Identity = 49/117 (41.88%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKD 60
           MSES+  NS PPPDD                 D  D    GSV              NKD
Sbjct: 62  MSESAESNSAPPPDDGVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAVWLNKD 121

Query: 61  DPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           DP+  EYC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 122 DPHTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKASSIAHKLWI--EQPENIPT 176

[Close]

BLAST of Sed0005624 vs. NCBI nr
Match: XP_022996792.1 (putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 49/117 (41.88%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKD 60
           MSES+  NS PPPDD                 D  D    GSV              NKD
Sbjct: 51  MSESAESNSAPPPDDIVEKAADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKD 110

Query: 61  DPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           DP   EYC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 111 DPQTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKENSIAHKLWI--EQPENIPT 165

[Close]

BLAST of Sed0005624 vs. NCBI nr
Match: XP_023002513.1 (putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 49/120 (40.83%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASR 60
           MSES+  NSV P DD G                     D    GSV              
Sbjct: 49  MSESAESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL 108

Query: 61  NKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +            LWV  EQPENIPT
Sbjct: 109 NKDDPHTSEYCSPQNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWV--EQPENIPT 166

[Close]

BLAST of Sed0005624 vs. ExPASy TrEMBL
Match: A0A6J1HBR1 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111462634 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 49/117 (41.88%), Postives = 57/117 (48.72%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKD 60
           MSES+  NS PPPDD                 D  D    GSV              NKD
Sbjct: 51  MSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAVWLNKD 110

Query: 61  DPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           DP+  EYC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 111 DPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWI--EQPENIPT 165

[Close]

BLAST of Sed0005624 vs. ExPASy TrEMBL
Match: A0A6J1K304 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111491924 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 49/117 (41.88%), Postives = 56/117 (47.86%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKD 60
           MSES+  NS PPPDD                 D  D    GSV              NKD
Sbjct: 51  MSESAESNSAPPPDDIVEKAADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWLNKD 110

Query: 61  DPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           DP   EYC+P +IDSM+K  L+VKGETQIV +            LW+  EQPENIPT
Sbjct: 111 DPQTSEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLKENSIAHKLWI--EQPENIPT 165

[Close]

BLAST of Sed0005624 vs. ExPASy TrEMBL
Match: A0A6J1KJQ6 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-08
Identity = 49/120 (40.83%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASR 60
           MSES+  NSV P DD G                     D    GSV              
Sbjct: 49  MSESAESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL 108

Query: 61  NKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +            LWV  EQPENIPT
Sbjct: 109 NKDDPHTSEYCSPQNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWV--EQPENIPT 166

[Close]

BLAST of Sed0005624 vs. ExPASy TrEMBL
Match: A0A6J1KTS0 (Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-08
Identity = 49/120 (40.83%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASR 60
           MSES+  NSV P DD G                     D    GSV              
Sbjct: 49  MSESAESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL 108

Query: 61  NKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +            LWV  EQPENIPT
Sbjct: 109 NKDDPHTSEYCSPQNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWV--EQPENIPT 166

[Close]

BLAST of Sed0005624 vs. ExPASy TrEMBL
Match: A0A6J1GJ11 (Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 49/120 (40.83%), Postives = 55/120 (45.83%), Query Frame = 0


Query: 1   MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASR 60
           MSES   NSV P DD G                     D    GSV              
Sbjct: 49  MSESGESNSVLPLDDGGAKAEEAADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL 108

Query: 61  NKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +            LWV  EQPENIPT
Sbjct: 109 NKDDPHTSEYCSPQNIDSMHKVTLEVKGETQIVNLSEKLKANSIVHKLWV--EQPENIPT 166

[Close]

BLAST of Sed0005624 vs. TAIR 10
Match: AT5G10700.1 (Peptidyl-tRNA hydrolase II (PTH2) family protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-09
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 42  KDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT 89
           KDDP  L+YC+P  IDSM+K  L+VKGETQ++ +            LW  +EQPENIPT
Sbjct: 106 KDDPVTLQYCDPQHIDSMHKVTLEVKGETQMMNLSEKLKLGGISHKLW--MEQPENIPT 162

The following BLAST results are available for this feature:

BLAST of Sed0005624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962062.1	5.6e-09	41.88	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]	[more]
XP_038884124.1	7.3e-09	40.00	putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]	[more]
XP_023546189.1	9.6e-09	41.88	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]	[more]
XP_022996792.1	2.8e-08	41.88	putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima]	[more]
XP_023002513.1	1.8e-07	40.83	putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0005624 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBR1	2.7e-09	41.88	Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111462634 PE=4 SV=1	[more]
A0A6J1K304	1.3e-08	41.88	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111491924 PE=4 SV=1	[more]
A0A6J1KJQ6	8.7e-08	40.83	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1	[more]
A0A6J1KTS0	8.7e-08	40.83	Aminoacyl-tRNA hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111496331 PE=4 SV=1	[more]
A0A6J1GJ11	1.1e-07	40.83	Aminoacyl-tRNA hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111454312 PE=4 SV=1	[more]

BLAST of Sed0005624 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10700.1	4.6e-09	50.85	Peptidyl-tRNA hydrolase II (PTH2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005624.1	Sed0005624.1	mRNA