Sed0005573 (gene) Chayote v1

Overview


Name	Sed0005573
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like
Location	LG12: 32509584 .. 32510571 (+)
RNA-Seq Expression	Sed0005573
Synteny	Sed0005573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCTCATAACGAAACCAGATCGCTGCTTGCGGCGGCGCCAATTTCGCCATCGCTAAATCCTAGCCACTTCCTTTCAGTACCGGAGATTTCCACAACGCCACCATGGTTGACCGTGAACGCGACCGAGATCGGGGCCGTGACAGAGACAAAGATCGGGACCGTGATCGATACAAGGATCGGGAGCGAGATCGTGACCACCGTGACCGTGACCGGGACCGAGACCGGCGTAGAGATCGCGAAGACCGCGACCGGGACCGTGACCGCGGCAGGAGTAAAAGGTCACACACTCCAGACCACTCCAGATCCCGCCATACTCGCTCGCCGGATCGGTACCGGTCGCGCTCTCTTTCTCATTCCCCTGACGATCGGTCTCTTCGCCGCCGCCATCGCTCTCCTTCCCCGGAACATGCTCGGAAGCGTCATCGGCGGGATTTGACGGTGGAGGATGAGAAGGATAGGCAGAAAGCAGTGTCGGACTTCGTGGATGGAATTGCGAAGGAGCAGCATAAGCAGAAGAAAGATAAAGAAATTGGTGGTGGAGAAGTGGTGGAGGAGGAGGCGGTGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTGGGAATTCCTGTGGGGTTTGATTCGACGAAGGGAAAGCCCGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGCGGTCACCAAGCGGCAGCCTAGGCAGTACATGAACCGGCGTGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGCTAGCTAATTGATTTCGCTAGGTCACCGTGGTTAGTCGATTGTTCCTTTTAATTTTCAGTTTTTGGTTTCTTTGTTTACATTGTCTTCATAGCTTCGATTGTAATTTGAAAACGGATATGAATACTGGCGGTTGATTAGAACTTTGCTGTTAATGTTGCCTTCTCCCTAAATTTTGGTTTTAATATCTACATAAATGTATTTGGCTATGTTCTGTATTTCTTTGCGACTCATCCTGG

mRNA sequence

ATATCTCATAACGAAACCAGATCGCTGCTTGCGGCGGCGCCAATTTCGCCATCGCTAAATCCTAGCCACTTCCTTTCAGTACCGGAGATTTCCACAACGCCACCATGGTTGACCGTGAACGCGACCGAGATCGGGGCCGTGACAGAGACAAAGATCGGGACCGTGATCGATACAAGGATCGGGAGCGAGATCGTGACCACCGTGACCGTGACCGGGACCGAGACCGGCGTAGAGATCGCGAAGACCGCGACCGGGACCGTGACCGCGGCAGGAGTAAAAGGTCACACACTCCAGACCACTCCAGATCCCGCCATACTCGCTCGCCGGATCGGTACCGGTCGCGCTCTCTTTCTCATTCCCCTGACGATCGGTCTCTTCGCCGCCGCCATCGCTCTCCTTCCCCGGAACATGCTCGGAAGCGTCATCGGCGGGATTTGACGGTGGAGGATGAGAAGGATAGGCAGAAAGCAGTGTCGGACTTCGTGGATGGAATTGCGAAGGAGCAGCATAAGCAGAAGAAAGATAAAGAAATTGGTGGTGGAGAAGTGGTGGAGGAGGAGGCGGTGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTGGGAATTCCTGTGGGGTTTGATTCGACGAAGGGAAAGCCCGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGCGGTCACCAAGCGGCAGCCTAGGCAGTACATGAACCGGCGTGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGCTAGCTAATTGATTTCGCTAGGTCACCGTGGTTAGTCGATTGTTCCTTTTAATTTTCAGTTTTTGGTTTCTTTGTTTACATTGTCTTCATAGCTTCGATTGTAATTTGAAAACGGATATGAATACTGGCGGTTGATTAGAACTTTGCTGTTAATGTTGCCTTCTCCCTAAATTTTGGTTTTAATATCTACATAAATGTATTTGGCTATGTTCTGTATTTCTTTGCGACTCATCCTGG

Coding sequence (CDS)

ATGGTTGACCGTGAACGCGACCGAGATCGGGGCCGTGACAGAGACAAAGATCGGGACCGTGATCGATACAAGGATCGGGAGCGAGATCGTGACCACCGTGACCGTGACCGGGACCGAGACCGGCGTAGAGATCGCGAAGACCGCGACCGGGACCGTGACCGCGGCAGGAGTAAAAGGTCACACACTCCAGACCACTCCAGATCCCGCCATACTCGCTCGCCGGATCGGTACCGGTCGCGCTCTCTTTCTCATTCCCCTGACGATCGGTCTCTTCGCCGCCGCCATCGCTCTCCTTCCCCGGAACATGCTCGGAAGCGTCATCGGCGGGATTTGACGGTGGAGGATGAGAAGGATAGGCAGAAAGCAGTGTCGGACTTCGTGGATGGAATTGCGAAGGAGCAGCATAAGCAGAAGAAAGATAAAGAAATTGGTGGTGGAGAAGTGGTGGAGGAGGAGGCGGTGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTGGGAATTCCTGTGGGGTTTGATTCGACGAAGGGAAAGCCCGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGCGGTCACCAAGCGGCAGCCTAGGCAGTACATGAACCGGCGTGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACCCGCTAG

Protein sequence

MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTPDHSRSRHTRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

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BLAST of Sed0005573 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 1.1e-86
Identity = 196/224 (87.50%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRD----RRRDREDRDRDRDRGR 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHR+RDRDRD    RRRDREDRDR+R+RGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDHSRSRH----TRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPD  RSRH    TRSPDR+R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGF 180
           V+D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           DSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Sed0005573 vs. NCBI nr
Match: XP_023007065.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] >XP_023007073.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 328.2 bits (840), Expect = 5.4e-86
Identity = 194/224 (86.61%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRD----RRRDREDRDRDRDRGR 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHR+RDRDRD    RRRDR+DRDR+R+RGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDHSRSRH----TRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPD  RSRH    TRSPD++R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGF 180
           V+D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           DSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

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BLAST of Sed0005573 vs. NCBI nr
Match: KAG6587747.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021718.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.8 bits (839), Expect = 7.1e-86
Identity = 195/224 (87.05%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRD----RRRDREDRDRDRDRGR 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHR+RDRDRD    RRRDREDRDR+R+RGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDHSRSRHTRSP----DRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPD  RSRHTRS     DR+R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGF 180
           V+D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           DSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Sed0005573 vs. NCBI nr
Match: XP_022930164.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930170.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930179.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 1.2e-85
Identity = 194/222 (87.39%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH--RDRDRDRDRRRDREDRDRDRDRGRSK 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH  RDRDR+R+RRRDREDRDR+R+RGRSK
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRERERRRDREDRDRERERGRSK 60

Query: 61  RSHTPDHSRSRHTRSP----DRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVE 120
           RSHTPD  RSRHTRS     DR+R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLTV+
Sbjct: 61  RSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLTVD 120

Query: 121 DEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDS 180
           D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGFDS
Sbjct: 121 DDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGFDS 180

Query: 181 TKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           TKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 TKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of Sed0005573 vs. NCBI nr
Match: XP_022135124.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 5.6e-83
Identity = 191/225 (84.89%), Postives = 207/225 (92.00%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRS 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH  R+RDR+RRRDR+DRDR+R+RGRSKRS
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH--RERDRERRRDRDDRDRERERGRSKRS 60

Query: 61  HTPDHSRSRH----TRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDE 120
           HTPD +RSRH    TRSPDR+RSRSLS +P+DRS RRRHR+PSPEHARKRHRRDLT +DE
Sbjct: 61  HTPDRTRSRHTRSRTRSPDRHRSRSLSRTPEDRSGRRRHRTPSPEHARKRHRRDLTADDE 120

Query: 121 KDRQKAVSDFVDGIAKEQHKQKKDKE-----IGGGEVVEEEAVADEDEIEMMKKLGIPVG 180
           K+RQKAVSDFVDGIAKEQHKQKK+K+      GGGEVV EEA+ADEDEIEMMKKLGIPVG
Sbjct: 121 KERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVV-EEAMADEDEIEMMKKLGIPVG 180

Query: 181 FDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           FDSTKGKPVAGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 FDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 222

[Close]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-08
Identity = 78/194 (40.21%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 18  RDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTPDHSRSRHTRSPDRY 77
           R R R   RER R  R   RDR+RRR    R R+RDR RS+            +RSP R 
Sbjct: 3   RSRSRSPRRERRRS-RSTSRDRERRRRERSRSRERDRRRSR------------SRSPHRR 62

Query: 78  RSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQKAVSDFVDGIAKEQHKQ 137
           RSRS           RRHRS SP  +R + RRD    +EK   K +        K + +Q
Sbjct: 63  RSRS----------PRRHRSTSPSPSRLKERRD----EEKKETKEI--------KNKERQ 122

Query: 138 KKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQP 197
             ++++ G           E+EIEMMK +G    FDSTKGK V G+ +   +    KR+ 
Sbjct: 123 ITEEDLEG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKY 151

Query: 198 RQYMNRRGGFNRPL 211
           RQYMNR+GGFNRPL
Sbjct: 183 RQYMNRKGGFNRPL 151

[Close]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 76/194 (39.18%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 18  RDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTPDHSRSRHTRSPDRY 77
           R R R   RER R  R   R+R+RRR    R R+RDR RS+            +RSP R 
Sbjct: 3   RSRSRSPRRERRRS-RSTSRERERRRRERSRSRERDRRRSR------------SRSPHRR 62

Query: 78  RSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQKAVSDFVDGIAKEQHKQ 137
           RSRS           RRHRS SP  +R + RRD   E++K+ ++          K + +Q
Sbjct: 63  RSRS----------PRRHRSTSPSPSRLKERRD---EEKKETKE---------TKSKERQ 122

Query: 138 KKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRAVTKRQP 197
             ++++ G           E+EIEMMK +G    FDSTKGK V G+ +   +    KR+ 
Sbjct: 123 ITEEDLEG---------KTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKY 151

Query: 198 RQYMNRRGGFNRPL 211
           RQYMNR+GGFNRPL
Sbjct: 183 RQYMNRKGGFNRPL 151

[Close]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot
Match: A2A4P0 (ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 4   RERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTP 63
           ++R R R RDRD+DRDRDR +DR+RDRD +DR+RDRDR RDRE RDR+RD  R  RS + 
Sbjct: 174 KKRSRSRDRDRDRDRDRDRDRDRDRDRD-KDRERDRDRERDRE-RDRERDHKRRHRSRSR 233

Query: 64  DHSRSR-HTRSPDRYRSRSLSHSP-DDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQK 123
            HSR+R  T+   RYRSRS S SP  DR  R ++   + +  R +H     V+     + 
Sbjct: 234 SHSRTRERTKGKSRYRSRSRSQSPFKDRKDREKYGERNLDRWRDKH-----VDRPPPEEP 293

Query: 124 AVSDFVDG 130
           A+ D  +G
Sbjct: 294 AIGDIYNG 294

[Close]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot
Match: Q6DDA4 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.9e-05
Identity = 74/206 (35.92%), Postives = 99/206 (48.06%), Query Frame = 0


Query: 6   RDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTPDH 65
           R R R  +R ++R R R   RER+R  R+R R R+RRR R                    
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERRRSR-------------------- 62

Query: 66  SRSRHTRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQKAVSD 125
                +RSP R RSRS           RRHRS S    R + RRD   +D+KD       
Sbjct: 63  -----SRSPHRRRSRS----------PRRHRSSSISPGRLKDRRD---DDKKD------- 122

Query: 126 FVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDSTKGKPVAGA-D 185
                  ++ K  K+++I      E+     E+EIEMMK +G    FD++KGK V G+ +
Sbjct: 123 ------SKESKGAKERQI----AAEDLEGKTEEEIEMMKMMGFAT-FDTSKGKKVDGSVN 152

Query: 186 VSGVRAVTKRQPRQYMNRRGGFNRPL 211
              +    KR+ RQYMNR+GGFNRPL
Sbjct: 183 AYAINVSQKRKYRQYMNRKGGFNRPL 152

[Close]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot
Match: Q6GLZ8 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.7e-05
Identity = 75/206 (36.41%), Postives = 98/206 (47.57%), Query Frame = 0


Query: 6   RDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRSHTPDH 65
           R R R  +R ++R R R   RER+R  R+R R R+RRR R                    
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERRRSR-------------------- 62

Query: 66  SRSRHTRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDEKDRQKAVSD 125
                +RSP R RSRS           RRHRS S   +R + RRD       D +K   +
Sbjct: 63  -----SRSPHRRRSRS----------PRRHRSSSISPSRLKDRRD-------DDKKEPKE 122

Query: 126 FVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDSTKGKPVAGA-D 185
              G +KE+    +D E   G+         E+EIEMMK +G    FDS+KGK   G+ +
Sbjct: 123 SKGGGSKERQLAAEDLE---GKT--------EEEIEMMKLMGF-ASFDSSKGKKTDGSVN 154

Query: 186 VSGVRAVTKRQPRQYMNRRGGFNRPL 211
              +    KR+ RQYMNR+GGFNRPL
Sbjct: 183 AYAINVSQKRKYRQYMNRKGGFNRPL 154

[Close]

BLAST of Sed0005573 vs. ExPASy TrEMBL
Match: A0A6J1L1Y6 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111499666 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.6e-86
Identity = 194/224 (86.61%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRD----RRRDREDRDRDRDRGR 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHR+RDRDRD    RRRDR+DRDR+R+RGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDHSRSRH----TRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPD  RSRH    TRSPD++R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGF 180
           V+D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           DSTKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Sed0005573 vs. ExPASy TrEMBL
Match: A0A6J1EW85 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111436672 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.9e-86
Identity = 194/222 (87.39%), Postives = 206/222 (92.79%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH--RDRDRDRDRRRDREDRDRDRDRGRSK 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH  RDRDR+R+RRRDREDRDR+R+RGRSK
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRERERRRDREDRDRERERGRSK 60

Query: 61  RSHTPDHSRSRHTRSP----DRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVE 120
           RSHTPD  RSRHTRS     DR+R+RSLS SP+DRSLRRRHRSPSPEHARKRHRRDLTV+
Sbjct: 61  RSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLTVD 120

Query: 121 DEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFDS 180
           D+K+RQK VSDFVDGIAKEQHKQKK+K+  GGE V EEAVADEDEIEMMKKLGIPVGFDS
Sbjct: 121 DDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGFDS 180

Query: 181 TKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           TKGKPV GADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 TKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of Sed0005573 vs. ExPASy TrEMBL
Match: A0A6J1C0K3 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia OX=3673 GN=LOC111007178 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.7e-83
Identity = 191/225 (84.89%), Postives = 207/225 (92.00%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRDRGRSKRS 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH  R+RDR+RRRDR+DRDR+R+RGRSKRS
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDH--RERDRERRRDRDDRDRERERGRSKRS 60

Query: 61  HTPDHSRSRH----TRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHARKRHRRDLTVEDE 120
           HTPD +RSRH    TRSPDR+RSRSLS +P+DRS RRRHR+PSPEHARKRHRRDLT +DE
Sbjct: 61  HTPDRTRSRHTRSRTRSPDRHRSRSLSRTPEDRSGRRRHRTPSPEHARKRHRRDLTADDE 120

Query: 121 KDRQKAVSDFVDGIAKEQHKQKKDKE-----IGGGEVVEEEAVADEDEIEMMKKLGIPVG 180
           K+RQKAVSDFVDGIAKEQHKQKK+K+      GGGEVV EEA+ADEDEIEMMKKLGIPVG
Sbjct: 121 KERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVV-EEAMADEDEIEMMKKLGIPVG 180

Query: 181 FDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           FDSTKGKPVAGADVSGVR VTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 FDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 222

[Close]

BLAST of Sed0005573 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.3e-81
Identity = 187/232 (80.60%), Postives = 201/232 (86.64%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRER--------------DRDHRDRDRDRDRRRDRE 60
           MVDRERDRDRGRDRDKDRDRDRYKDRER              DRDHR+RDRDR+RRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRDRDRGRSKRSHTPDHSRSR--HTRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHAR 120
           DRDR+R+RGRSKRSHTPD SRSR   TRSPDR+RSRSLS +P+DRS RRRHRSPSP+HAR
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSRRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDHAR 120

Query: 121 KRHRRDLTVEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMK 180
           KRHRRDLT +DEK+RQKAVSDFVDGIAKEQHKQK +K+  G   V EEA+ADEDEIEMMK
Sbjct: 121 KRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEMMK 180

Query: 181 KLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           KLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 KLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Sed0005573 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.3e-81
Identity = 187/232 (80.60%), Postives = 201/232 (86.64%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRER--------------DRDHRDRDRDRDRRRDRE 60
           MVDRERDRDRGRDRDKDRDRDRYKDRER              DRDHR+RDRDR+RRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRDRDRGRSKRSHTPDHSRSR--HTRSPDRYRSRSLSHSPDDRSLRRRHRSPSPEHAR 120
           DRDR+R+RGRSKRSHTPD SRSR   TRSPDR+RSRSLS +P+DRS RRRHRSPSP+HAR
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSRRSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDHAR 120

Query: 121 KRHRRDLTVEDEKDRQKAVSDFVDGIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMK 180
           KRHRRDLT +DEK+RQKAVSDFVDGIAKEQHKQK +K+  G   V EEA+ADEDEIEMMK
Sbjct: 121 KRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEMMK 180

Query: 181 KLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           KLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 KLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Sed0005573 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-44
Identity = 139/223 (62.33%), Postives = 159/223 (71.30%), Query Frame = 0


Query: 5   ERDRDRGRDRDKDRDRDRYKDRERDRDHRDRDRDRDRRRDREDRDRDRD-RGRSKRSHTP 64
           ERDR R R+RDKDR+ DR  DR R RD RDRDRDRDR RDRE RDRDR  R +  RS TP
Sbjct: 3   ERDR-RERERDKDREPDR--DRRRGRDDRDRDRDRDRERDRE-RDRDRGLRNKKSRSRTP 62

Query: 65  D-HSRSRHTRSPDRYRSRSLSHSPD---DRSLRRRHRSPSPEHARKRHRRDLTVEDEKD- 124
           D H+R+RH RSP+RYRSRS S   D   DR    R RSPSP+   ++  R  +V+DEK+ 
Sbjct: 63  DHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQGSVDDEKER 122

Query: 125 -RQKAVSDFVD----GIAKEQHKQKKDKEIGGGEVVEEEAVADEDEIEMMKKLGIPVGFD 184
            R++ V+D VD     I K++ KQ  D    GG   E+E   D +EIEMMK LGIP GFD
Sbjct: 123 NRKRVVTDSVDENASTITKKKDKQPSDAADNGGG--EDEEGMDVNEIEMMKMLGIPTGFD 182

Query: 185 STKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 217
           STKGKPVAGADVSG+RAVTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 STKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of Sed0005573 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530476.1	1.1e-86	87.50	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub...	[more]
XP_023007065.1	5.4e-86	86.61	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] ...	[more]
KAG6587747.1	7.1e-86	87.05	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]
XP_022930164.1	1.2e-85	87.39	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata...	[more]
XP_022135124.1	5.6e-83	84.89	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia]	[more]

BLAST of Sed0005573 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K194	6.2e-08	40.21	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q8WVK2	4.0e-07	39.18	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
A2A4P0	1.7e-05	47.66	ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1	[more]
Q6DDA4	2.9e-05	35.92	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX...	[more]
Q6GLZ8	3.7e-05	36.41	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835...	[more]

BLAST of Sed0005573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1Y6	2.6e-86	86.61	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima...	[more]
A0A6J1EW85	5.9e-86	87.39	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moscha...	[more]
A0A6J1C0K3	2.7e-83	84.89	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia O...	[more]
A0A5D3CK71	4.3e-81	80.60	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	4.3e-81	80.60	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]

BLAST of Sed0005573 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	1.4e-44	62.33	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 157..212 e-value: 1.2E-24 score: 86.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 25..216
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 25..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005573.1	Sed0005573.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus