Sed0005570 (gene) Chayote v1

Overview


Name	Sed0005570
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L18a
Location	LG10: 913163 .. 915124 (+)
RNA-Seq Expression	Sed0005570
Synteny	Sed0005570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCTTTCAGGGTAACCGTTCAAACTCCCATGAAATAAGATGATGAAAATTGAATCTCCTTATTGATTCTTCTCATCACGATCTGTTTTCTTGTTGCAGTTTCACCAATACCAGGTTGTGGGGCGGGCTCTCCCATCCGAAGCAGATGAACATCCAAAGATTTACCGAATGAAGCTGTGGGCAACCAATGAAGTTCGCGCTAAATCCAAGTTTTGGTGAGTTTTATCGTGTTTTTGTTCGATCATTTTGGATTGTTTGGCTAGTTTGATCACTAAAATCGAGATTCTATGCTCGAATTCACTATGTTTTGAACTGTTTTGCATCAGGTATTTTCTGCGGAAGCAGAAGAAAGTCAAGAAGAGCAACGGTCAGGTTCTTGCGATCAATGAGGTAATGTTGTTTTTAGCCTCTAAGATTGTATTCCGATGATTTTTTTTCATTTTTTCTGATCATTTATGGATGTGATCTTATGTTAGCCTACATAGTTAAGACATTGTCACTTTGTATGTAAAAAACCTGGCCTTAATGCTGAACTATTCAATTTTGCTTCTTTGTATTGTAGTTGTTACCATGATTTACTTATTGTTCAGTGCTATGTCCCGTGCTAATATTGTACAGCATTGCCTTTTGATGTTTTGGAAGTATTGTCGTTGTGATCACATTGTGAGCGTAAGTGTGAAGAACTTATGGTGGGCTGATGGATTGGATTTTTTTTGTTTGTATTTTTGTTTTTAAGTTTGATTTAGTGCATACTCTATTGGTTATGTTGATGTGGGTTAGTTTTGCAATGTGAATTTTATATGATAGAAGGGAGAAAATATTAGCTATCTTGAGAACCTTGGTCGTCAAAGACAGCCTAAGCGGGCTCGAATACTTTAGGTTTCCTGGACATCCAAATGTTGCAGGGTATGATAGTAATTAGTATGTCTTGTGACAATTTCCTAGACAGCCTAAGCGGGCTCGAATACTGGCATAATATGAACAATTAGCTATCTTGATGAGTAGATTTGATGTGTAATATGTGTCTATATTGGTGTAAGATGATTTAGGCATTGTAATGGATATACATAGTGGGAAAAGGGGATTTCCTTTAGGTTTCCTGGACATCCAAATGTTGCAGGGTATGATAGTAATTAGTATGTCTTGTGACAATTTCCTAGACAGCCTAAGCGGGCTCGAATACTGGCATAATATGAACAATTAGCTATCTTGATGAGTAGATTTGATGTGTAATATGTGTCTATATTGGTGTAAGATGATTTAGGCATTGTAATGGATATACATAGTGGGAAAAGGGGATTTAGCCCAGTGGTAATTGGCTTTATCCTCGACCAGGAGGTCATGTGCTTGAATTCCCAATTCCTTCCTTAATATTATTGTTGTTCTTGAGAAACATAGATATGCATAGTAGGCCTCCTATTTTTATAGAAAGAATTCTGACATTGATTGTGACTCAGTCCTCCAAGTTGTCTGTTAACTATTGGCTTCACATTTGGTTGGTCGATCTGTTTTCTCGGTTGGGGTTGCGTAGCTCTTGAATTTGTACGCCAGAATTATCAGCTCTACTCTATTCTTAAGTTTTAGGTTGTTCTTATGGAGTTGTCATTGTATTTTAGATCTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACAGGGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACAATGAAATGGGTTCTCGCCATCGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACAGCGACCGTCTCGGCTAAGCTATGCAAGAGGGAAAGCACCAAACAATTTCATGACTCCAAAATCAAGTTCCCATTGGTGCACAAGACTGTTAGGCCACCCACCCGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAG

mRNA sequence

ATGGTTTCTTTCAGGTTTCACCAATACCAGGTTGTGGGGCGGGCTCTCCCATCCGAAGCAGATGAACATCCAAAGATTTACCGAATGAAGCTGTGGGCAACCAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCAGAAGAAAGTCAAGAAGAGCAACGGTCAGGTTCTTGCGATCAATGAGATCTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACAGGGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACAATGAAATGGGTTCTCGCCATCGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACAGCGACCGTCTCGGCTAAGCTATGCAAGAGGGAAAGCACCAAACAATTTCATGACTCCAAAATCAAGTTCCCATTGGTGCACAAGACTGTTAGGCCACCCACCCGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAG

Coding sequence (CDS)

ATGGTTTCTTTCAGGTTTCACCAATACCAGGTTGTGGGGCGGGCTCTCCCATCCGAAGCAGATGAACATCCAAAGATTTACCGAATGAAGCTGTGGGCAACCAATGAAGTTCGCGCTAAATCCAAGTTTTGGTATTTTCTGCGGAAGCAGAAGAAAGTCAAGAAGAGCAACGGTCAGGTTCTTGCGATCAATGAGATCTTTGAGAAGAACCCAACCAAGATCAACAACTATGGTATTTGGTTGCGCTACCAAAGTCGCACAGGATATCACAACATGTACAAGGAGTACAGGGACACCACCTTAAACGGAGCGGTGGAAGCAATGTACAATGAAATGGGTTCTCGCCATCGGGTCAGGTTTCCTTGCATCCAAATCATCAAGACAGCGACCGTCTCGGCTAAGCTATGCAAGAGGGAAAGCACCAAACAATTTCATGACTCCAAAATCAAGTTCCCATTGGTGCACAAGACTGTTAGGCCACCCACCCGAAAGCTGAAGACCACTTACAAGGCTTCAAGGCCCAATTTGTTTATGTAG

Protein sequence

MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQVLAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRFPCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM

Homology

[Close]

BLAST of Sed0005570 vs. NCBI nr
Match: XP_022146684.1 (60S ribosomal protein L18a-like [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 8.4e-93
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEM SRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV +TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. NCBI nr
Match: XP_022157842.1 (60S ribosomal protein L18a [Momordica charantia])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 169/178 (94.94%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEM SRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. NCBI nr
Match: XP_038880985.1 (60S ribosomal protein L18a [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 170/178 (95.51%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEM SRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRH 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV +TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. NCBI nr
Match: XP_004134633.1 (60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Csa_003074 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 5.5e-92
Identity = 170/178 (95.51%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EM SRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. NCBI nr
Match: XP_030470745.1 (60S ribosomal protein L18a-like isoform X1 [Syzygium oleosum])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 168/178 (94.38%), Postives = 172/178 (96.63%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EAD+HPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPTEADDHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MYNEM SRHRVRF
Sbjct: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFH+SKIKFPLV K VRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.1e-90
Identity = 159/178 (89.33%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTAT+ AKLCKRES+KQFH+SKIKFPLV + +RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.9e-87
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M +FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++ VRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 321.6 bits (823), Expect = 5.5e-87
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEI+EKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFH+SKIKFPLV + VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.6e-86
Identity = 154/178 (86.52%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RK KKVKKSNGQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRE TKQFH+SKIKFPLV + VRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.0e-85
Identity = 152/178 (85.39%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+QKKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV A LCKRESTKQFH+SKIKFPLV + VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy TrEMBL
Match: A0A6J1CYS9 (60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111015828 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.1e-93
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEM SRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV +TVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFRTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy TrEMBL
Match: A0A6J1DVK7 (60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111024455 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 169/178 (94.94%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEM SRHRVR+
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMASRHRVRY 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPP+RKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy TrEMBL
Match: A0A0A0KIJ4 (60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.6e-92
Identity = 170/178 (95.51%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EM SRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPPTRKLKTTYKASRPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy TrEMBL
Match: A0A5D3CNU8 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008940 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.9e-92
Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EM SRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0005570 vs. ExPASy TrEMBL
Match: A0A1S3AZ74 (60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.9e-92
Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPTKI NYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMY EM SRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYTEMASRHRVRH 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFHDSKIKFPLV KTVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKTVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0005570 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 321.6 bits (823), Expect = 3.9e-88
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRK KKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEI+EKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRESTKQFH+SKIKFPLV + VRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Sed0005570 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 318.9 bits (816), Expect = 2.5e-87
Identity = 154/178 (86.52%), Postives = 161/178 (90.45%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RK KKVKKSNGQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPT I NYGIWLRYQSRTGYHNMYKEYRDTTLNG VE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV AKLCKRE TKQFH+SKIKFPLV + VRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Sed0005570 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-86
Identity = 152/178 (85.39%), Postives = 162/178 (91.01%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+QKKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRF 120
           LAINEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRF
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           PCIQIIKTATV A LCKRESTKQFH+SKIKFPLV + VRPPTRKLKTT+KA++PNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Sed0005570 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 314.7 bits (805), Expect = 4.8e-86
Identity = 151/176 (85.80%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 3   SFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKQKKVKKSNGQVLA 62
           S   HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+QKKVKKSNGQ+LA
Sbjct: 137 SIALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLA 196

Query: 63  INEIFEKNPTKINNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEAMYNEMGSRHRVRFPC 122
           INEIFEKNPT I N+GIWLRYQSRTGYHNMYKEYRDTTLNGAVE MY EM SRHRVRFPC
Sbjct: 197 INEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPC 256

Query: 123 IQIIKTATVSAKLCKRESTKQFHDSKIKFPLVHKTVRPPTRKLKTTYKASRPNLFM 179
           IQIIKTATV A LCKRESTKQFH+SKIKFPLV + VRPPTRKLKTT+KA++PNLFM
Sbjct: 257 IQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of Sed0005570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146684.1	8.4e-93	95.51	60S ribosomal protein L18a-like [Momordica charantia]	[more]
XP_022157842.1	2.5e-92	94.94	60S ribosomal protein L18a [Momordica charantia]	[more]
XP_038880985.1	2.5e-92	95.51	60S ribosomal protein L18a [Benincasa hispida]	[more]
XP_004134633.1	5.5e-92	95.51	60S ribosomal protein L18a [Cucumis sativus] >KGN49388.1 hypothetical protein Cs...	[more]
XP_030470745.1	1.2e-91	94.38	60S ribosomal protein L18a-like isoform X1 [Syzygium oleosum]	[more]

BLAST of Sed0005570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	9.1e-90	89.33	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
Q943F3	1.9e-87	87.08	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
P51418	5.5e-87	87.08	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q9LUD4	3.6e-86	86.52	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
Q8L7K0	3.0e-85	85.39	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of Sed0005570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYS9	4.1e-93	95.51	60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111015828 PE=3 S...	[more]
A0A6J1DVK7	1.2e-92	94.94	60S ribosomal protein L18a OS=Momordica charantia OX=3673 GN=LOC111024455 PE=3 S...	[more]
A0A0A0KIJ4	2.6e-92	95.51	60S ribosomal protein L18a OS=Cucumis sativus OX=3659 GN=Csa_6G522810 PE=3 SV=1	[more]
A0A5D3CNU8	5.9e-92	94.94	60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3AZ74	5.9e-92	94.94	60S ribosomal protein L18a OS=Cucumis melo OX=3656 GN=LOC103484376 PE=3 SV=1	[more]

BLAST of Sed0005570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34480.1	3.9e-88	87.08	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	2.5e-87	86.52	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	2.1e-86	85.39	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	4.8e-86	85.80	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.10		coord: 72..147 e-value: 5.1E-41 score: 140.9
None	No IPR available	GENE3D	3.10.20.10		coord: 1..71 e-value: 1.6E-37 score: 129.2
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 71..146
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 2.1E-53 score: 179.6
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 3.0E-72 score: 239.7
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 6..69 score: 24.454504

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005570.1	Sed0005570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome