Sed0005563 (gene) Chayote v1

Overview


Name	Sed0005563
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG01: 13951918 .. 13952672 (+)
RNA-Seq Expression	Sed0005563
Synteny	Sed0005563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGCAATGAAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAGCTACCGGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTCGGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAACTGGGTTCAGGTATTAAAGAATAGTTATAAAATAAACTTTCAAATTATTTACGAATCGTATGTTCTTAATTTCATTGTCAGACGCACCCAAATGCAAAGGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCGATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCTCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAGCAGGAAATGCTTGATGTGTTGCGTCTTGGCATGAAACATGCGAAGACGAGCAAATTGTGA

mRNA sequence

ATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGCAATGAAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAGCTACCGGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTCGGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAACTGGGTTCAGACGCACCCAAATGCAAAGGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCGATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCTCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAGCAGGAAATGCTTGATGTGTTGCGTCTTGGCATGAAACATGCGAAGACGAGCAAATTGTGA

Coding sequence (CDS)

ATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGCAATGAAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAGCTACCGGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTCGGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAACTGGGTTCAGACGCACCCAAATGCAAAGGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCGATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCTCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAGCAGGAAATGCTTGATGTGTTGCGTCTTGGCATGAAACATGCGAAGACGAGCAAATTGTGA

Protein sequence

MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGGSQEYYIPEIPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGMKHAKTSKL

Homology

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BLAST of Sed0005563 vs. NCBI nr
Match: KAA0042500.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 103/225 (45.78%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R +RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRALRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI VE  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMWGPACSGFGWNDEEKCIVVEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           I +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 IDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

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BLAST of Sed0005563 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 5.1e-50
Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+      D       G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGNEDFPLVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

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BLAST of Sed0005563 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.4e-51
Identity = 103/225 (45.78%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R +RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRALRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI VE  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMWGPACSGFGWNDEEKCIVVEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           I +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 IDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+      D       G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGNEDFPLVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. ExPASy TrEMBL
Match: A0A5A7TC56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00560 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.4e-50
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCP 60
           M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 120
           + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KCI  E  +FDNWV++HP AKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPE 180
           L NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYSQG 180

Query: 181 IPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGM 220
           + +++++   +  SR +   + S G KRKR S++   L+ + L +
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

[Close]

BLAST of Sed0005563 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-09
Identity = 47/189 (24.87%), Postives = 82/189 (43.39%), Query Frame = 0


Query: 12  WTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRV 71
           WT   D  L+  L+E V  G       TF     NE++   + K       +  V+  R 
Sbjct: 327 WTPPMDYHLIDLLVEQVNNG--NRVGQTFITSAWNEMVTAFNAKFGS--QHNKDVLKNRY 386

Query: 72  KSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDD 131
           K  +R Y  I  +L    +GF W+ +   +  +  +++ ++Q HP A+    K  P Y +
Sbjct: 387 KHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPN 446

Query: 132 LAYIFGKDRACGSISQSARDIAEEDSNAE---VGEGGGSQEY----YIPEIPVAEEEDPN 191
           L +IFGK+ + G  ++ A+  A + S AE   + E G +  +       ++     E  +
Sbjct: 447 LCFIFGKETSDGRYTRLAQ--AFDPSPAETVRMNESGSTDGFKDTRSFQKVVYTSNEKND 506

Query: 192 TPTSRVARP 194
            P S +  P
Sbjct: 507 YPCSNIGPP 507

[Close]

BLAST of Sed0005563 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-08
Identity = 35/166 (21.08%), Postives = 72/166 (43.37%), Query Frame = 0


Query: 8   IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS---- 67
           +R  WT   D   ++ ++E V++G          N++ + L      K   C  T+    
Sbjct: 10  LRTVWTPEMDQYFIELMVEQVRKG----------NRFEDHLFSKRAWKFMSCSFTAKFKF 69

Query: 68  ---TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 127
                V+  R K+ +  ++++  +L     GF W+D  + +  +  V+D +++ HP+++ 
Sbjct: 70  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 129

Query: 128 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG 167
              K  P Y DL  ++       S  ++   I+E +S   + E  G
Sbjct: 130 FRIKSIPCYKDLCLVYSDGM---SEHKAEESISEGESKTLIQEDDG 160

[Close]

BLAST of Sed0005563 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-08
Identity = 35/166 (21.08%), Postives = 72/166 (43.37%), Query Frame = 0


Query: 8   IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS---- 67
           +R  WT   D   ++ ++E V++G          N++ + L      K   C  T+    
Sbjct: 10  LRTVWTPEMDQYFIELMVEQVRKG----------NRFEDHLFSKRAWKFMSCSFTAKFKF 69

Query: 68  ---TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKG 127
                V+  R K+ +  ++++  +L     GF W+D  + +  +  V+D +++ HP+++ 
Sbjct: 70  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 129

Query: 128 LNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG 167
              K  P Y DL  ++       S  ++   I+E +S   + E  G
Sbjct: 130 FRIKSIPCYKDLCLVYSDGM---SEHKAEESISEGESKTLIQEDDG 160

The following BLAST results are available for this feature:

BLAST of Sed0005563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042500.1	1.3e-50	45.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050293.1	5.1e-50	45.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038975.1	1.1e-49	44.89	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032766.1	1.1e-49	44.89	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033744.1	1.1e-49	44.89	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]

BLAST of Sed0005563 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGP1	6.4e-51	45.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U308	2.4e-50	45.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	5.4e-50	44.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	5.4e-50	44.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TC56	5.4e-50	44.89	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0005563 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	4.6e-09	24.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	8.7e-08	21.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	8.7e-08	21.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..108 e-value: 7.8E-7 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..220
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 5..210
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 5..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005563.1	Sed0005563.1	mRNA