Sed0005553 (gene) Chayote v1

Overview


Name	Sed0005553
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich SC35-like splicing factor SCL28
Location	LG12: 5413855 .. 5420984 (-)
RNA-Seq Expression	Sed0005553
Synteny	Sed0005553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGTATCGGAGCCGGAGCAGAAGCTACAGCCCTCGTCGGCGTAGCAGAAGCCCGCCACCACGCGGGCGGAAACGCTACGACGACGTCGACGACACTCGGGACCGGTGCCGCGAAACCAGGTCTCGTAGGGACCGCCGCTCTCCCGCTCCTTCTGGATTGCTCGTTCGCAATCTTCCCCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCCGTTTCTGTTCTTGGTAATGGTTATCGTTCTTAGTGTGTTGGAGGAATTAGAATGGCTTATTGGCTTTCGCTTTTGTGCATACTTTATTATGGTCGCTTTGTTTGGAGTTTTGAATTTAGGGCAGTTGGGAATTATGATGTGTCGTATTCAACAACATTTTGTTCTGATTTTCATTCAGTAGACTCGGATACATGAGTTTAGACTTCGGCCTTGGCCTAGGCTTCTTTATGGGTTGTTTTTTTTGTACTTGGGACTATGCTTTAGGAACAGGCTCCGGCCCCATAGCCGAAGGTGGATTGGATCGTACATACGAAAAATTTGAAAACAAATCATCAACTCCGGGGGTATTATTATTGTCGATATAGAGCCGCTTGACTACTTGAATAATTTATTCCCCTCTATTCTAGCTTCTAATTTGGCTTAATCTTTAGATTCTTGAAGATTAAAGGAAACATGATTGGTTTGGATGCTTTGGTGGGTTCGGATGAAAGAGAGTGTTTTGACTCCAGAGTTGATGATCCGGCACCCTCGGGTGCTTATATGTTTTGCTTTATAAGTTTAGGGAATGAAAATGGAATCCTATTTCTATGCCTTCCTAAACTAGGGTTTATGCTTGACTTTAACCTCCTCCTTAGGGCCAGGCCTATTGTAGGAATTTTGATTAGTAGTTATAAAAGAGTCGATCAAATAGAGCCTTTGTTGCTATTCATTTATCGTCAAGCCGTGTGCAATCGCTTTACATTGTATTGTTTTCACGTTTTCTATTGTCTATCCAATCTATGATTTATGAGGAGGAATAATCCAGTGTTTTGATTGCATTCTATACAGGCCAGAAGATCTTAGGATCCCCTTCGAGCGATTTGGTCCTGTTAAGGATATTTATCTGCCGAAGAACTACTACACAGGGTATGACTGCTTTCATGTTAACTTGTGCACACTTGGGTGTTATAGAAATCAATTTATTACCTCTGGGTGCTTGTTTTTTTCTCTTAAATATCTGGGCATCCACACTAGATCATAGTGTTTTGGCTACATTAGTTATGAAAGAAATAATGAGAAATTAATATTGTTTTTTAGATCCCAAATCACTGGTTTAACCGTTAGACCGGTTCATTTTCTAGGTTGTGACCGTGAGATGAGAATTTGGAGTACATTTGGAGTTTCAAACTTCACACTTCAACTTTCTAGAGAGAATAGGGATCGTAGAGAGGTCAAAGGACTGACGGATGAGGAATGGATAAGGAATTTTTCAAAGATAAACTACATATTTTAGTTTGTAGTGATAGTAATTAATACTTGAATTTAGTTAAAACTGTCTTTTATTGTCCGAAGAACCAAGCTTTCATCAAGACATAAAGAATTCACCGAGTATCAAAAAAACTTAAGCACCACCAAACTAAAGGCAACGGTTCTAGTTAGTAATATGAGACCTTAATGGTAATTGTACAAAAAGAACCTTCATCATTTATGCCTAAAGAGAAGTACAGAACCTAGTGAAGAACCAAACATCACTTAAGTTCCTATTTACCCCTTTAAAGTTCACATTTTTTCTCTTTCCTACAAACCTCACAAGACTACGCATACACTTTCTAACCATGATCTTGTGGATGAAAGAGGAACACCTCGGGCATCTATCTCTCTATAATCCATGTTTCTAGCAAGATGGAAACCTAATGCATAAAAAAACTGCCTCAAATTGACCAAGCATTGTTGCAACTCTAAACATCCCTTTCGAGATCGTGACAACCCTTTCTAGTTATTAGTAAGATTTTTTTTTTACATTTTTCATGTTTTGAATTTGTGGTAGCTCTGACATATTCTAGCAATGACTTATTTGTTGCATTCATTTATATATTTTTGTTTCTCAATGATATTATTCCCTTCATTGCCTATTTGTAGGGAGCCTCGGGGATTTGGGTTTGTGAAGTTTCGATATGGAGAAGATGCAAGTGAAGCAAAACAACAGCTAAATCATACTGTTATTGGTGGACGAGAGATACGAATTGTCTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGCGTGACATCACACGCAAGGTTATATAACCTTCCACCTAACTTTTATTTGCAGTACCTTTATGTCTTTTAATAGCTTCTCCATGAAAGGAGTGTTTTTAATCTTGAACTAATATATCAATTGGCTTTTCTTGTTTGTCATTCATAGTGGCAGAGTCTCCAGAAGGCGCTCACCAGGAAGGTCTCCCAGAAGATATCGTTGTCAGTACACATTTATGTTGCCTTTTTTTCCTGACTTTCATGAATATAAGAAATTGAATTTTATTTTGGGTTGATGTTTAATTAGCACCATCCTGATGCAATATTGTAATTACACCCTCATTTTATACTCAATAACCTTTTTCTACCTGACTGCAGCTTACTCGCGCTCACCTTCACCTGCCAGGCATGGCTCAAGGTTGGATACTTTTGTCATGCTTATTCTATTAGTAGCAACACTAACACTTTCCATTACTTATTGCTAGTGGCTACTACCCTGTTTGGAAATTTTGTTTGTTCCTATCTTGATAATTAGTAAGTTGCACATGCCTTCTTTGAACCATATATTTCCGCCCTAGAACATGTCTGAAATTCTTTTTGGATGAGATGGTATACTATTTTGATATTATGTACTGTCCTTATTGAGTATCCAAACCTCCAACCGAAGCACTTGTCCATTGTTTTAATGTAATACTAATTTCACATGGGGTGAGATCATTTTTGCAGGTTTAGATCCAAGTGGTTATCTTGTATGGTTTTAGTTTCAGACTAAATATTGGTGTCATAGTCCAACAATAATGGCACCTTCTATTTTCTATTTTCCATTAGGTTTATAAGGTCAGCTCAAAACATAAAATCTTAGTCATATTTTTTTTCCTACATGCTCCGGTTGTAGATTTCTTTTACAATCATAGGTTGACGTAGTGGTCAAGTGAGTCTTAGGGAAAGAGGTTATGTGTTTAATCTGTGATGTCCACCTACCATAGGTTTCCTGCGATGAGAATAATTGAGGTTCGTATTAGCTGGCCAACAACATGGATATCATTTTTGTGTGTAGATTTCTTATTTCATATGCTTGAATTTTATCATGTTATGTTTAACCAAAGTAATCACCTTTTGGCGTTTGGAGCTTCCATTTTTTCATTTTTCAATGAAATTGTTTCTTATTTAAAAAAAAAAGAAAGTTTAACCAAAGTCATTAAATTTAATGTTGGATTTGGTGCACGTGGAATATTCTGCTCCACATAGTACAGTGTTGCATTGCCGGACATTGTATACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGGGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCAACTTGCTTACTTTACCTATGGAACCCTCTTCATGAGTCATCTATTGCTTATTCAAGTATCATAGCTGCCTGGTTTTTATTTGTTTGTTGACATATGTTTTGTGAGGCAGTAATTGAGCATTGGTGAGAGTTTCAAATCAAAAGTTAATTTTTTTTTTTCCTTTTCCTCAACTCTCAACGATTTATCAGAAAGAAAGTAATTTATAAGTTTGATATCTTCTTTTGCGTATACCATCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCGAAGAAAGAAACCATCTTCAAAGGAGAAAGGCCAAAGTTTAACTGGTTGTAGTATGGTGACACTGTCCAAGAAAAGATAATGTGGTTTTTAGAAAGTTGGGGGCAAAGAGAGCTATGAACTTGTCAGTAGCTGATCAACCAGTACAGCTCAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATGAGTTTTGAAAATGATGTTAAAAGAAACTTGTCCTCATAAAAGTAGGATGTAGTATCATAAGTACCTATTCAACGTCGTTCCTCATTGGGGCCCTTGAAGACTGCTCAGACATTTTTTCTTTCCAGTCACAAAGAGAGATGGGTTGTGTTGTGCTGTTTTATGTCCTGATGGAAGTCTTATTTGTTTGATTTGTTGATTTATTTCTCTATTCATTTTCCCATTGTTGTGGCTAACCCAGGAACCATAGGGCAAGGGATGGATATTTTTCTCCTGCACGATCTAGATCGATTTCACGATCTCATTCCCCTCGTGATGGGCGGAAATACAGCCGATCTCCAAGTCTGAAGGAGAATGGCAGGAGCCCTCATGAAGAGAATGTTGCACGCAGTAGATCAAGGAGTCCAAGGGCTGTTAGTCGCAGTCCTTCTGGATCCCGCTCACGATCTCGTTCACGATCCTATAGGTATTTTACCTTTTTAAGTTCCTTTTACTGATCTTTTAGAAGTCAAATCTCTCATGCCAGAATAGTTGATTAATGCATATCATGCAATATTGGTAGTTTCAAGATTCATGCTGTTTACTTCAACTAAATAAATGAATTGATGAAATTTGTATTACTGTTTCCTTTTTCCTTGGCGATTCAAGTGAAATGTCCTAGGAGATTAAGTAGGCCCATGCCAGATGCAAATAGGTGTCCAATATGTATGTGTCAAGCTAAGCCCTAGAAGATAAAGTTTACATACCGATGGGTTGCACTTAAAAAGCTGATGATATTTTCTCAGACGGTTATTGGAAGTCGATTATAGAGGCGAGAAGGAAACAACATGCTTGAATAATCTTGTTGTTTCTCTCCCTCTTGTCAAGAATATCATTGTTCACAGTTACTACAATATGAACTCATAATGTAGGGGACATAAAAGTTGTTGACGTTGATTTGTCATTGTTAAATATTTCTCATGGTTCAAAGTGTGTTAAGTCTAGCCTGGGAATCCTTTCACCTGACTGACTAACTAACACCCTGCCTTGTTGCTTCTGCAGTCCTCGCTGATGGATGCGTTTAGGGTTTGTGCAGTGGTCGAGATTAGTTAGCATGCTTTCGGTTGTGGCCAGACGAAGAATTATATGCTATTCCATCCCGATAGTTGTGGGTTGAAGAATAATGAGTGTAATCTTTGGTGTTCTCAAACAGTTCAGTTAACTTTTACTAGATTTAGGATTTTGGGATCTGTGGATTTCGTTTTACTCTTGTATATGTCAAATGGTTTGTATTTGATGATGATGATACCGACAGGTTTTGAAAAACATAGGATGCTCAAATCTTCATAATCATGTTGGCTTGGTTTTTTTCTAGTATTTTTATGTCTAGTAATCTCTTCTTTGGTGTTCTTTTACTAATTCGGACATGTTGATGATCTCACACTTCGGAAAGGTGAGTATGTTTTTTTAAAGATACATAAATTATGAGCCACCCCTTTTACCAATTAATTTAAAGATGGAATCTATGTTTCTTTCCGTAAAAATTAAAGACACAATTGTTATCACTGATTTCAGTGGCGTGTTTTGGAATTCATCATTTGTGATTAGATCTGATATGTGTTGTGTTTTCATGGTACAAAAGCTTCAGCTTCTTGTTCAAAATTTCCTTGGTCGTTATTTCTGTTTTTAAAATTAGTTTCATGGTCGTTTTTTGGATCTGAGTTTTTTATTTGTTGTGGCTTTTAAGTTCTCTGAAGTTGTGATTTTTAGAAGCATATTTCTTGTTATTCTACATCGTTGAAAAATGTAATTTGTATCTTTCATATCCTTCTCTCTGCTAGCAAACTTGTCTAGAAACCTGGAGTTGTTTTTTTGGTAATTTTTGTAGTTTGAGCAGGTAATTTGTTTCTTGTATATTTTCTATTAAACAGAGGAATAGGAGACTATTTGTCTGTGCCATTTTTTTAAAAAAATTAATAATCATATTTGGGGTGAATAATTTGAATCTATAACCTCCATTTATTTATGTCATTCAGCATAGTATTAATAATAATAATAAAAATTACGTAATCATATTAGTTTAGCAGACGAGAAAGATTTGCAACTATTTTCATCAAGCTTAGAAAGTTATGGACTAAACTTGAAAATGTGTTTAGTACGATCCGAGGTGTCCTTAAATGTCAAATATTTATTGTTTAGAAAATAAGTAGCTCTCGGCATATTTTTAAATGCTTAAATATATGTTAATTTTCTAAAATATAAGAAAATTTGGCTATATATTTAATTTGTTCTGAAGGGCATAATTTTAGTGATATCATGCCGTTCCAACATTAATTTGATTTTCAACGAAAAAAATCAAATTTTGCGTCGCCATATGTTGGTTCATACCAAAGCGGAGGCCGCCCTTTTGGTTCAATTTGACAATAGTATTCATAAAATTACAACGAAAATAGTTTTCATAAAGTTCAACAAAAAAAAGTATACAATTTTTGCCAAAAGTTTCTAAAAATTTCTATGCTAAAAATGTTTGTCGGAACTTATTAAAAATGAACCCAAGTGTTAGATTTCTTTTTTGGAAAATTTGAATCTCTTATTTTTGGACATCAGGAAATTTGAATGTAAGCCTTTCATTGATTTTGATGATAATGAGAATTATTACATGGAGCAAAAGACAACAGCAACGGTCGAAATAAAGCCCACATGCAAATCACATGACCGTTTTGAAAATTTGAACGTATAACAGTGCCACGTCACCCGTTGCAGTTCTTATTTTCAATAATAATAAAAAAAAACAAATATTTTCTTTTTCGCAATTTTCTCTGTTCCCGCCCATTTCATACACCGTTTCTCATCGCTGTGGACGATTTTTCCGAGCAACGGCACAAAAGCAGACTCCATTTCTCTGCTTCATCTCCGCCATTGACGTAGATCTTCAAGAAATCAAGCTCGATTCTCTCTTCCCTCGCTCTCTTTTGATCGTATTTACGGTTTCTCGATTTCGTAATCTGAAACCCTAG

mRNA sequence

ATGGCGAGGTATCGGAGCCGGAGCAGAAGCTACAGCCCTCGTCGGCGTAGCAGAAGCCCGCCACCACGCGGGCGGAAACGCTACGACGACGTCGACGACACTCGGGACCGGTGCCGCGAAACCAGGTCTCGTAGGGACCGCCGCTCTCCCGCTCCTTCTGGATTGCTCGTTCGCAATCTTCCCCTTGATGCTAGGCCAGAAGATCTTAGGATCCCCTTCGAGCGATTTGGTCCTGTTAAGGATATTTATCTGCCGAAGAACTACTACACAGGAGAGAATAGGGATCTGGCAGAGTCTCCAGAAGGCGCTCACCAGGAAGGTCTCCCAGAAGATATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCATGGCTCAAGTAATTGAGCATTGGAACCATAGGGCAAGGGATGGATATTTTTCTCCTGCACGATCTAGATCGATTTCACGATCTCATTCCCCTCGTGATGGGCGGAAATACAGCCGATCTCCAAGTCTGAAGGAGAATGGCAGGAGCCCTCATGAAGAGAATGTTGCACGCAGTAGATCAAGGAGTCCAAGGGCTACGAAGAATTATATGCTATTCCATCCCGATAGTTGTGGGTTGAAGAATAATGAGTGTAATCTTTGGTGTTCTCAAACACTCGATTCTCTCTTCCCTCGCTCTCTTTTGATCGTATTTACGGTTTCTCGATTTCGTAATCTGAAACCCTAG

Coding sequence (CDS)

ATGGCGAGGTATCGGAGCCGGAGCAGAAGCTACAGCCCTCGTCGGCGTAGCAGAAGCCCGCCACCACGCGGGCGGAAACGCTACGACGACGTCGACGACACTCGGGACCGGTGCCGCGAAACCAGGTCTCGTAGGGACCGCCGCTCTCCCGCTCCTTCTGGATTGCTCGTTCGCAATCTTCCCCTTGATGCTAGGCCAGAAGATCTTAGGATCCCCTTCGAGCGATTTGGTCCTGTTAAGGATATTTATCTGCCGAAGAACTACTACACAGGAGAGAATAGGGATCTGGCAGAGTCTCCAGAAGGCGCTCACCAGGAAGGTCTCCCAGAAGATATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCATGGCTCAAGTAATTGAGCATTGGAACCATAGGGCAAGGGATGGATATTTTTCTCCTGCACGATCTAGATCGATTTCACGATCTCATTCCCCTCGTGATGGGCGGAAATACAGCCGATCTCCAAGTCTGAAGGAGAATGGCAGGAGCCCTCATGAAGAGAATGTTGCACGCAGTAGATCAAGGAGTCCAAGGGCTACGAAGAATTATATGCTATTCCATCCCGATAGTTGTGGGTTGAAGAATAATGAGTGTAATCTTTGGTGTTCTCAAACACTCGATTCTCTCTTCCCTCGCTCTCTTTTGATCGTATTTACGGTTTCTCGATTTCGTAATCTGAAACCCTAG

Protein sequence

MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRDLAESPEGAHQEGLPEDIVLTRAHLHLPGMAQVIEHWNHRARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRATKNYMLFHPDSCGLKNNECNLWCSQTLDSLFPRSLLIVFTVSRFRNLKP

Homology

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BLAST of Sed0005553 vs. NCBI nr
Match: KAG7018652.1 (Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-51
Identity = 135/216 (62.50%), Postives = 146/216 (67.59%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLP--------------GMAQVIEHWNHRARDGYFSPARSRSISRSH 180
           G    IV    +   P               ++      +  ARD Y SPARSRSISRSH
Sbjct: 121 GREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSH 180

Query: 181 SPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
           SPRD R YSRSP+ KENGRSP   ++ARSRSRSPRA
Sbjct: 181 SPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRA 213

[Close]

BLAST of Sed0005553 vs. NCBI nr
Match: XP_022979912.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 1.8e-50
Identity = 137/235 (58.30%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            ARD Y SPARSRSISRSHSPRD R YSRSP+ KENGRSP   ++ARSRSRSPRA
Sbjct: 181 GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRA 232

[Close]

BLAST of Sed0005553 vs. NCBI nr
Match: XP_023527505.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 1.8e-50
Identity = 137/235 (58.30%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            ARD Y SPARSRSISRSHSPRD R YSRSP+ KENGRSP   ++ARSRSRSPRA
Sbjct: 181 GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRA 232

[Close]

BLAST of Sed0005553 vs. NCBI nr
Match: XP_022955785.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 9.0e-50
Identity = 136/235 (57.87%), Postives = 146/235 (62.13%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MA+YRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MAKYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            ARD Y SPARSRSISRSHSPRD R YSRSP+ KENGRSP   + ARSRSRSPRA
Sbjct: 181 GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRA 232

[Close]

BLAST of Sed0005553 vs. NCBI nr
Match: XP_038878233.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 4.9e-48
Identity = 134/235 (57.02%), Postives = 145/235 (61.70%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           M RYRSRSRSYSPRRRSR+ PPRGRKR+D  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MGRYRSRSRSYSPRRRSRT-PPRGRKRHD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            AR+ Y SPARSRSISRS SPRD R YSRSP+ KENGRSP E + ARSRSRSPRA
Sbjct: 181 GAREEYLSPARSRSISRSRSPRDRRDYSRSPTPKENGRSPREVDNARSRSRSPRA 232

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BLAST of Sed0005553 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-26
Identity = 104/244 (42.62%), Postives = 122/244 (50.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MAR RSRSRSYSPR R RS PPR RK YDD     +R RE  S RD  S  PSGLL+RNL
Sbjct: 1   MARARSRSRSYSPRPRDRS-PPRERKGYDD-----NRLRERPSSRDHESSGPSGLLIRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR-----------DLAESPEGAHQEGL- 120
           PLDARP DLR  FERFGP+KDIYLP+NYYTGE R           D AE+ +  + + + 
Sbjct: 61  PLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 120

Query: 121 ---------------PEDIVLTRAHLHLPGMAQVIEHWNHRAR----------------- 180
                          P+++  T       G  +   H + R R                 
Sbjct: 121 GREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH 180

Query: 181 -----DGYFSP-ARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENV---------ARS 186
                D  +SP  RSRSISRS  PR+ R+Y        N RSP EE V         +RS
Sbjct: 181 SKVREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERVLTPIRSRCLSRS 233

[Close]

BLAST of Sed0005553 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-15
Identity = 80/210 (38.10%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 7   RSRSYSPR------RRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 66
           R RSY+P       RR RSP PRGR                     R    P+ LLVRNL
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGR------------------YGGRSRDLPTSLLVRNL 61

Query: 67  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPEGAHQE------ 126
             D R EDLR  FE+FGPVKDIYLP++YYTG+ R        D A++ +  H        
Sbjct: 62  RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLL 121

Query: 127 GLPEDIVLTRAHLHLPGMAQVIEHWNHRARDGYFSPARSRSISRSHSPRDGRKYSRS--- 186
           G    +V    +   P   +  E    R RD   +P R  S SRS  PR GR  SRS   
Sbjct: 122 GRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDY 181

[Close]

BLAST of Sed0005553 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-14
Identity = 78/213 (36.62%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 7   RSRSYSPR------RRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 66
           R RSY+P       RR RSP PRGR        +RD            S  P+ LLVRNL
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGR-----FGGSRD------------SDLPTSLLVRNL 61

Query: 67  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPEGAHQE------ 126
             D R EDLR PFE+FGPVKDIYLP++YYTG+ R        D A++ E  HQ       
Sbjct: 62  RHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLL 121

Query: 127 GLPEDIVLTRAHLHLPGMAQVIEHW--NHRARDGYFSPARSRSISRSHSPRDGRK----- 186
           G    +V    +   P   +  +    ++R +D   SP R    SRS  PR GR+     
Sbjct: 122 GRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPR---YSRSPPPRRGRRSRSRS 181

[Close]

BLAST of Sed0005553 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-12
Identity = 70/207 (33.82%), Postives = 91/207 (43.96%), Query Frame = 0


Query: 4   YRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNLPLD 63
           Y    R Y  R RS  PPP  R+ Y                  RR  +   LLVRN+PLD
Sbjct: 9   YSPPRRGYGGRGRS-PPPPPPRRGYGG----------GGGGGGRRGSSHGSLLVRNIPLD 68

Query: 64  ARPEDLRIPFERFGPVKDIYLPKNYYTGENR-----------DLAESPEGAHQE---GLP 123
            RPE+LR PFERFGPV+D+Y+P++YY+G+ R           D  E+    ++    G  
Sbjct: 69  CRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGRE 128

Query: 124 EDIVLTRAHLHLPGMAQVIEHWNHR----ARDGYFSPARSRSISRSHSPRDG-------R 183
             +V+       P   +V      R    +RD     +RSRSISRS SPR         R
Sbjct: 129 ITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYR 188

Query: 184 KYSRSPSLKENGRSPHEENVARSRSRS 186
             S SP+ +  G  P  E       RS
Sbjct: 189 SRSYSPAPRRRGGPPRGEEDENYSRRS 204

[Close]

BLAST of Sed0005553 vs. ExPASy Swiss-Prot
Match: Q8WXF0 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 44/150 (29.33%), Postives = 69/150 (46.00%), Query Frame = 0


Query: 50  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPE 109
           P  + L +RN+    RPEDLR  F R+GP+ D+Y+P ++YT   R        D+ ++ +
Sbjct: 7   PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 110 GAHQE------GLPEDIVLTRAHLHLPGMAQVIEHWNHRARDGYFSPARSRSISRSHSPR 169
             +        G   +I   +     PG  +  E       D   S + S+  +RS S  
Sbjct: 67  ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSS 126

Query: 170 DGRKYSRSPSLKENGRSPHEENVARSRSRS 186
            GR   RS SLKE+       + ++SRS+S
Sbjct: 127 WGRNRRRSDSLKESRHRRFSYSQSKSRSKS 156

[Close]

BLAST of Sed0005553 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 8.8e-51
Identity = 137/235 (58.30%), Postives = 147/235 (62.55%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            ARD Y SPARSRSISRSHSPRD R YSRSP+ KENGRSP   ++ARSRSRSPRA
Sbjct: 181 GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRA 232

[Close]

BLAST of Sed0005553 vs. ExPASy TrEMBL
Match: A0A6J1GW11 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111457670 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 136/235 (57.87%), Postives = 146/235 (62.13%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MA+YRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MAKYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
            ARD Y SPARSRSISRSHSPRD R YSRSP+ KENGRSP   + ARSRSRSPRA
Sbjct: 181 GARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRA 232

[Close]

BLAST of Sed0005553 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 7.0e-48
Identity = 133/236 (56.36%), Postives = 147/236 (62.29%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSRS PPRGRKRYD  DD RDR  E+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRS-PPRGRKRYD--DDPRDRYHESRSYRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR-----------DLAESPE-------- 120
           PLDARPEDLR PFERFGPVKD+YLPKNYYTGE R           D AE+ +        
Sbjct: 61  PLDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 --------GAHQEGLPEDIVLT---------------------RAHLHLPGMAQVIEHWN 180
                          P+++ +T                     R++   P  A+  +  N
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPAR-HDSRN 180

Query: 181 HRARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPRA 189
             ARD Y SPARSRSISRS SP D R YSRSPS KENGRSP E ++ RSRSRS RA
Sbjct: 181 RGARDEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRA 232

[Close]

BLAST of Sed0005553 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 132/234 (56.41%), Postives = 144/234 (61.54%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPR 188
            ARD Y SPARSRSIS S SPRD + YSRSP+ K+NGRSP E + ARSRSRSP+
Sbjct: 181 GARDEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPK 231

[Close]

BLAST of Sed0005553 vs. ExPASy TrEMBL
Match: A0A1S3AXW0 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 132/234 (56.41%), Postives = 144/234 (61.54%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MARYRSRSRSYSPRRRSR+ PPRGRKRYD  DD RDR RE+RS RDRRSPAPSGLLVRNL
Sbjct: 1   MARYRSRSRSYSPRRRSRT-PPRGRKRYD--DDPRDRYRESRSHRDRRSPAPSGLLVRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENRD-------LAESPEGAHQE------- 120
           PLDARPEDLRIPFERFGPVKD+YLPKNYYTGE R         AE    A Q+       
Sbjct: 61  PLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIG 120

Query: 121 GLPEDIVLTRAHLHLPGMAQVIEHWNHR-------------------------------- 180
           G    IV    +   P   +V    + R                                
Sbjct: 121 GREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSR 180

Query: 181 -ARDGYFSPARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENVARSRSRSPR 188
            ARD Y SPARSRSIS S SPRD + YSRSP+ K+NGRSP E + ARSRSRSP+
Sbjct: 181 GARDEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPK 231

[Close]

BLAST of Sed0005553 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-28
Identity = 104/244 (42.62%), Postives = 122/244 (50.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 60
           MAR RSRSRSYSPR R RS PPR RK YDD     +R RE  S RD  S  PSGLL+RNL
Sbjct: 1   MARARSRSRSYSPRPRDRS-PPRERKGYDD-----NRLRERPSSRDHESSGPSGLLIRNL 60

Query: 61  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR-----------DLAESPEGAHQEGL- 120
           PLDARP DLR  FERFGP+KDIYLP+NYYTGE R           D AE+ +  + + + 
Sbjct: 61  PLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIG 120

Query: 121 ---------------PEDIVLTRAHLHLPGMAQVIEHWNHRAR----------------- 180
                          P+++  T       G  +   H + R R                 
Sbjct: 121 GREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRH 180

Query: 181 -----DGYFSP-ARSRSISRSHSPRDGRKYSRSPSLKENGRSPHEENV---------ARS 186
                D  +SP  RSRSISRS  PR+ R+Y        N RSP EE V         +RS
Sbjct: 181 SKVREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERVLTPIRSRCLSRS 233

[Close]

BLAST of Sed0005553 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-16
Identity = 80/210 (38.10%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 7   RSRSYSPR------RRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 66
           R RSY+P       RR RSP PRGR                     R    P+ LLVRNL
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGR------------------YGGRSRDLPTSLLVRNL 61

Query: 67  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPEGAHQE------ 126
             D R EDLR  FE+FGPVKDIYLP++YYTG+ R        D A++ +  H        
Sbjct: 62  RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLL 121

Query: 127 GLPEDIVLTRAHLHLPGMAQVIEHWNHRARDGYFSPARSRSISRSHSPRDGRKYSRS--- 186
           G    +V    +   P   +  E    R RD   +P R  S SRS  PR GR  SRS   
Sbjct: 122 GRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDY 181

[Close]

BLAST of Sed0005553 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-16
Identity = 80/210 (38.10%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 7   RSRSYSPR------RRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 66
           R RSY+P       RR RSP PRGR                     R    P+ LLVRNL
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGR------------------YGGRSRDLPTSLLVRNL 61

Query: 67  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPEGAHQE------ 126
             D R EDLR  FE+FGPVKDIYLP++YYTG+ R        D A++ +  H        
Sbjct: 62  RHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLL 121

Query: 127 GLPEDIVLTRAHLHLPGMAQVIEHWNHRARDGYFSPARSRSISRSHSPRDGRKYSRS--- 186
           G    +V    +   P   +  E    R RD   +P R  S SRS  PR GR  SRS   
Sbjct: 122 GRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDY 181

[Close]

BLAST of Sed0005553 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-15
Identity = 78/213 (36.62%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 7   RSRSYSPR------RRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNL 66
           R RSY+P       RR RSP PRGR        +RD            S  P+ LLVRNL
Sbjct: 2   RGRSYTPSPPRGYGRRGRSPSPRGR-----FGGSRD------------SDLPTSLLVRNL 61

Query: 67  PLDARPEDLRIPFERFGPVKDIYLPKNYYTGENR--------DLAESPEGAHQE------ 126
             D R EDLR PFE+FGPVKDIYLP++YYTG+ R        D A++ E  HQ       
Sbjct: 62  RHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLL 121

Query: 127 GLPEDIVLTRAHLHLPGMAQVIEHW--NHRARDGYFSPARSRSISRSHSPRDGRK----- 186
           G    +V    +   P   +  +    ++R +D   SP R    SRS  PR GR+     
Sbjct: 122 GRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPR---YSRSPPPRRGRRSRSRS 181

[Close]

BLAST of Sed0005553 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-13
Identity = 70/207 (33.82%), Postives = 91/207 (43.96%), Query Frame = 0


Query: 4   YRSRSRSYSPRRRSRSPPPRGRKRYDDVDDTRDRCRETRSRRDRRSPAPSGLLVRNLPLD 63
           Y    R Y  R RS  PPP  R+ Y                  RR  +   LLVRN+PLD
Sbjct: 9   YSPPRRGYGGRGRS-PPPPPPRRGYGG----------GGGGGGRRGSSHGSLLVRNIPLD 68

Query: 64  ARPEDLRIPFERFGPVKDIYLPKNYYTGENR-----------DLAESPEGAHQE---GLP 123
            RPE+LR PFERFGPV+D+Y+P++YY+G+ R           D  E+    ++    G  
Sbjct: 69  CRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGRE 128

Query: 124 EDIVLTRAHLHLPGMAQVIEHWNHR----ARDGYFSPARSRSISRSHSPRDG-------R 183
             +V+       P   +V      R    +RD     +RSRSISRS SPR         R
Sbjct: 129 ITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYR 188

Query: 184 KYSRSPSLKENGRSPHEENVARSRSRS 186
             S SP+ +  G  P  E       RS
Sbjct: 189 SRSYSPAPRRRGGPPRGEEDENYSRRS 204

The following BLAST results are available for this feature:

BLAST of Sed0005553 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018652.1	1.3e-51	62.50	Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma sub...	[more]
XP_022979912.1	1.8e-50	58.30	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]	[more]
XP_023527505.1	1.8e-50	58.30	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo...	[more]
XP_022955785.1	9.0e-50	57.87	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]	[more]
XP_038878233.1	4.9e-48	57.02	serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]	[more]

BLAST of Sed0005553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PDV2	1.1e-26	42.62	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q9SEU4	7.5e-15	38.10	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	6.3e-14	36.62	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	7.7e-12	33.82	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q8WXF0	1.7e-06	29.33	Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 S...	[more]

BLAST of Sed0005553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ05	8.8e-51	58.30	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GW11	4.4e-50	57.87	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36...	[more]
A0A6J1C7W4	7.0e-48	56.36	serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3...	[more]
A0A5D3CXM8	1.5e-47	56.41	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXW0	1.5e-47	56.41	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of Sed0005553 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18810.1	7.9e-28	42.62	SC35-like splicing factor 28	[more]
AT1G55310.1	5.3e-16	38.10	SC35-like splicing factor 33	[more]
AT1G55310.2	5.3e-16	38.10	SC35-like splicing factor 33	[more]
AT3G13570.1	4.5e-15	36.62	SC35-like splicing factor 30A	[more]
AT3G55460.1	5.5e-13	33.82	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 55..96 e-value: 5.5E-6 score: 26.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..103 e-value: 2.3E-10 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..190
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 1..94
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..94
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 11..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005553.1	Sed0005553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding