Sed0005497 (gene) Chayote v1

Overview


Name	Sed0005497
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	LG13: 18639684 .. 18640585 (+)
RNA-Seq Expression	Sed0005497
Synteny	Sed0005497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAGGATCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGGGGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGGTGGTATACAATCGGTTTACGTACTAATGGGGATCTTTATACTGGAGCTCTTTTTCTATTATTTCTTTCTGCTATATCTTTAATAGCGGGTTGGTTACACCTACAACCGAAATGGAAACCGAGCGTTTCATGGTTTAAAAATGCCGAATCTCGTCTTAATCATCATTTGTCAGGACTATTCGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTCCATGTCGCTATTCCTGCATCCAGGGAGAATATGTTCGATGGAATAATTTCTTAGATGTATTGCCACATCCCCAAGGATTAGGACCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCAAATAATCATTTATTTGGTACTTCTGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGATTGGACACAGTATAA

mRNA sequence

ATGGCACTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAGGATCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGGGGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGGTGGACTATTCGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTCCATGTCGCTATTCCTGCATCCAGGGAGAATATGTTCGATGGAATAATTTCTTAGATGTATTGCCACATCCCCAAGGATTAGGACCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCAAATAATCATTTATTTGGTACTTCTGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGATTGGACACAGTATAA

Coding sequence (CDS)

ATGGCACTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCGCATGACTTCGAAAGTCATGATGATATTACTGAAGAACGTCTTTATCAGAATATTTTTGCTTCTCATTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTAAAGGATCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCCGTCGAAGCTTTTACTCGAGGGGGTGCTCTTGGCCCAGTGAATATCGCTTATTCTGGTGTTTATCAGTGGTGGACTATTCGGAGTAAGTTCCTTGGCTTGGACAGGACATTTAGTCCATGTCGCTATTCCTGCATCCAGGGAGAATATGTTCGATGGAATAATTTCTTAGATGTATTGCCACATCCCCAAGGATTAGGACCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCAAATAATCATTTATTTGGTACTTCTGAAGGAGCAGGAACTGCCATTCTAACCCTTCTCGGGGGATTCCATCCGCAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTTGTTGCTGGTCATATGTATAGAACTAACTTCGGATTGGACACAGTATAA

Protein sequence

MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWTIRSKFLGLDRTFSPCRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLVAGHMYRTNFGLDTV

Homology

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BLAST of Sed0005497 vs. NCBI nr
Match: KAD2805226.1 (hypothetical protein E3N88_38603 [Mikania micrantha])

HSP 1 Score: 457.6 bits (1176), Expect = 6.7e-125
Identity = 210/240 (87.50%), Postives = 221/240 (92.08%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRI FGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 380 MALRFPRFSQGLAQDPTTRRIRFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 439

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIAYSGV
Sbjct: 440 TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAYSGV 499

Query: 121 YQWWTIRSKFLGLDRTFSPCRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNP 180
           YQWWT+R   L              +GEYVRWNNFL+VLPHPQGLGPLFTG+WNLYAQNP
Sbjct: 500 YQWWTLRLISLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGKWNLYAQNP 559

Query: 181 DSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLVAGHMYRTNFGL 240
           DS++HLFGTS+GAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFL+AGHMYRTNFG+
Sbjct: 560 DSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLIAGHMYRTNFGI 619

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BLAST of Sed0005497 vs. NCBI nr
Match: PHT94093.1 (Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 213/268 (79.48%), Postives = 222/268 (82.84%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           T  NLFHV WQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TFENLFHVDWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW----------------------------TIRSKFLGLDRTFSPCRYSCIQGEYVRW 180
           YQWW                            T   KFLGLDR FSPC Y   +GEYVRW
Sbjct: 121 YQWWLVTPTTEMETERFLVQKCRISSESSFVRTFWRKFLGLDRAFSPCCYPASRGEYVRW 180

Query: 181 NNFLDVLPHPQGLGPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLW 240
           NNFLDVLPH QGLG  FTGQWNLYAQNPDS++HLFGT++G  TA LT LGGFHPQTQSLW
Sbjct: 181 NNFLDVLPHLQGLGTHFTGQWNLYAQNPDSSSHLFGTAQGEETASLTFLGGFHPQTQSLW 240

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BLAST of Sed0005497 vs. NCBI nr
Match: YP_009945416.1 (photosystem I P700 apoprotein A2 [Sechium edule] >QOE55946.1 photosystem I P700 apoprotein A2 [Sechium edule])

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 220/297 (74.07%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. NCBI nr
Match: QIT04132.1 (photosystem I P700 apoprotein A2 [Sechium edule])

HSP 1 Score: 451.8 bits (1161), Expect = 3.7e-123
Identity = 220/297 (74.07%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. NCBI nr
Match: YP_010131093.1 (photosystem I P700 apoprotein A2 [Benincasa hispida] >QPZ75740.1 photosystem I P700 apoprotein A2 [Benincasa hispida] >QSQ72309.1 photosystem I P700 apoprotein A2 [Benincasa hispida])

HSP 1 Score: 450.3 bits (1157), Expect = 1.1e-122
Identity = 219/297 (73.74%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSALSLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot
Match: Q4VZN4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psaB PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 1.5e-124
Identity = 218/297 (73.40%), Postives = 226/297 (76.09%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GE VRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGESVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot
Match: Q68S07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Panax ginseng OX=4054 GN=psaB PE=3 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.0e-123
Identity = 215/297 (72.39%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFLSTISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDS+
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240

[Close]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot
Match: Q27S51 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Solanum tuberosum OX=4113 GN=psaB PE=3 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.0e-123
Identity = 215/297 (72.39%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDS+
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240

[Close]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 2.2e-123
Identity = 215/297 (72.39%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNEDLYSGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDS+
Sbjct: 181 GLFGVSPLAWTGHLVHVAIPGSRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSS 240

[Close]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot
Match: Q332X9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa OX=4236 GN=psaB PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 2.9e-123
Identity = 213/297 (71.72%), Postives = 226/297 (76.09%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLLISAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDS 
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSG 240

[Close]

BLAST of Sed0005497 vs. ExPASy TrEMBL
Match: A0A5N6LUF9 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_38603 PE=3 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125
Identity = 210/240 (87.50%), Postives = 221/240 (92.08%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRI FGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 380 MALRFPRFSQGLAQDPTTRRIRFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 439

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGA GPVNIAYSGV
Sbjct: 440 TSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAYSGV 499

Query: 121 YQWWTIRSKFLGLDRTFSPCRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNP 180
           YQWWT+R   L              +GEYVRWNNFL+VLPHPQGLGPLFTG+WNLYAQNP
Sbjct: 500 YQWWTLRLISLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGKWNLYAQNP 559

Query: 181 DSNNHLFGTSEGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLVAGHMYRTNFGL 240
           DS++HLFGTS+GAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFL+AGHMYRTNFG+
Sbjct: 560 DSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDMAHHHLAIAFIFLIAGHMYRTNFGI 619

[Close]

BLAST of Sed0005497 vs. ExPASy TrEMBL
Match: A0A2G3AIU9 (Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_01975 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.1e-124
Identity = 213/268 (79.48%), Postives = 222/268 (82.84%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           T  NLFHV WQGNFE+WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TFENLFHVDWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW----------------------------TIRSKFLGLDRTFSPCRYSCIQGEYVRW 180
           YQWW                            T   KFLGLDR FSPC Y   +GEYVRW
Sbjct: 121 YQWWLVTPTTEMETERFLVQKCRISSESSFVRTFWRKFLGLDRAFSPCCYPASRGEYVRW 180

Query: 181 NNFLDVLPHPQGLGPLFTGQWNLYAQNPDSNNHLFGTSEGAGTAILTLLGGFHPQTQSLW 240
           NNFLDVLPH QGLG  FTGQWNLYAQNPDS++HLFGT++G  TA LT LGGFHPQTQSLW
Sbjct: 181 NNFLDVLPHLQGLGTHFTGQWNLYAQNPDSSSHLFGTAQGEETASLTFLGGFHPQTQSLW 240

[Close]

BLAST of Sed0005497 vs. ExPASy TrEMBL
Match: A0A6H0EP56 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Sechium edule OX=184140 GN=psaB PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 220/297 (74.07%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. ExPASy TrEMBL
Match: A0A6H0ERZ3 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii OX=3677 GN=psaB PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.2e-123
Identity = 219/297 (73.74%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. ExPASy TrEMBL
Match: A0A6M3RVC2 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii var. japonica OX=61011 GN=psaB PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.2e-123
Identity = 219/297 (73.74%), Postives = 227/297 (76.43%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFEAWV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++ + +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNGDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240

[Close]

BLAST of Sed0005497 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 436.8 bits (1122), Expect = 1.1e-122
Identity = 210/297 (70.71%), Postives = 224/297 (75.42%), Query Frame = 0


Query: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60
           MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLW 60

Query: 61  TSGNLFHVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120
           TSGNLFHVAWQGNFE WV+DPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV
Sbjct: 61  TSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGV 120

Query: 121 YQWW------------------------TIRSKFLGLDRTFSP----------------- 180
           YQWW                        ++   +L L   + P                 
Sbjct: 121 YQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLS 180

Query: 181 ----------------CRYSCIQGEYVRWNNFLDVLPHPQGLGPLFTGQWNLYAQNPDSN 240
                                 +GEYVRWNNFL+VLPHPQGLGPLFTGQWNLYAQNPDS+
Sbjct: 181 GLFGVSSLAWTGHLVHVAIPASRGEYVRWNNFLNVLPHPQGLGPLFTGQWNLYAQNPDSS 240

[Close]

BLAST of Sed0005497 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-33
Identity = 96/289 (33.22%), Postives = 129/289 (44.64%), Query Frame = 0


Query: 8   FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLF 67
           FS+ +A+ P TT  IW   A AHDF+SH    EE + + +F++HFGQL+IIFLW SG  F
Sbjct: 32  FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYF 91

Query: 68  HVAWQGNFEAWVKDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAYSGVYQWWT- 127
           H A   N+EAW+ DP H+ P A  +W P  GQ  +     GG  G + I  SG +Q W  
Sbjct: 92  HGARFSNYEAWLSDPTHIGPSAQVVW-PIVGQEILNGDVGGGFRG-IQIT-SGFFQIWRA 151

Query: 128 --IRSKFLGLDRTFSPCRYSCIQGEYVRWNNFLDVLP--------------HPQGLGPLF 187
             I S+            ++ +   +  W ++    P              H  GL  L 
Sbjct: 152 SGITSELQLYCTAIGALVFAALM-LFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLG 211

Query: 188 TGQW--------------------------------------NLYAQNPDSNNHLFGTSE 241
           +  W                                       LY    +     F  + 
Sbjct: 212 SLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFTLNW 271

The following BLAST results are available for this feature:

BLAST of Sed0005497 vs. NCBI nr


Match Name	E-value	Identity	Description
KAD2805226.1	6.7e-125	87.50	hypothetical protein E3N88_38603 [Mikania micrantha]	[more]
PHT94093.1	1.3e-123	79.48	Photosystem I chlorophyll a apoprotein A2 [Capsicum annuum]	[more]
YP_009945416.1	3.7e-123	74.07	photosystem I P700 apoprotein A2 [Sechium edule] >QOE55946.1 photosystem I P700 ...	[more]
QIT04132.1	3.7e-123	74.07	photosystem I P700 apoprotein A2 [Sechium edule]	[more]
YP_010131093.1	1.1e-122	73.74	photosystem I P700 apoprotein A2 [Benincasa hispida] >QPZ75740.1 photosystem I P...	[more]

BLAST of Sed0005497 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN4	1.5e-124	73.40	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus OX=3659 GN=psa...	[more]
Q68S07	1.0e-123	72.39	Photosystem I P700 chlorophyll a apoprotein A2 OS=Panax ginseng OX=4054 GN=psaB ...	[more]
Q27S51	1.0e-123	72.39	Photosystem I P700 chlorophyll a apoprotein A2 OS=Solanum tuberosum OX=4113 GN=p...	[more]
Q33332	2.2e-123	72.39	Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p...	[more]
Q332X9	2.9e-123	71.72	Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa OX=4236 GN=psaB...	[more]

BLAST of Sed0005497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6LUF9	3.2e-125	87.50	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_38603 PE=3 SV=1	[more]
A0A2G3AIU9	6.1e-124	79.48	Photosystem I chlorophyll a apoprotein A2 OS=Capsicum annuum OX=4072 GN=T459_019...	[more]
A0A6H0EP56	1.8e-123	74.07	Photosystem I P700 chlorophyll a apoprotein A2 OS=Sechium edule OX=184140 GN=psa...	[more]
A0A6H0ERZ3	5.2e-123	73.74	Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii OX=367...	[more]
A0A6M3RVC2	5.2e-123	73.74	Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichosanthes kirilowii var. j...	[more]

BLAST of Sed0005497 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	1.1e-122	70.71	Photosystem I, PsaA/PsaB protein	[more]
ATCG00350.1	3.8e-33	33.22	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..130 e-value: 2.6E-65 score: 222.8
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 142..243 e-value: 1.7E-39 score: 137.4
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 4..240
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 162..240 e-value: 2.2E-25 score: 89.0 coord: 8..125 e-value: 1.5E-51 score: 175.5
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 144..240
None	No IPR available	PANTHER	PTHR30128:SF55	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 144..240
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 1..125
None	No IPR available	PANTHER	PTHR30128:SF55	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005497.1	Sed0005497.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0034357	photosynthetic membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003735	structural constituent of ribosome