Sed0005481 (gene) Chayote v1

Overview


Name	Sed0005481
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Actin-related protein 2/3 complex subunit 3
Location	LG11: 1325523 .. 1329414 (-)
RNA-Seq Expression	Sed0005481
Synteny	Sed0005481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATGGCAACAAAAAGACGATGAAGAAAATACCAGAGACGAAAACCCTTTCTCCGATCTCCACCGCTAACTTCACCGCTTTCTCTGAAATTTCCGGTGAATATTCCGGCGCCGATCCGGTCATCGGAACAGAAACTCACCGGTAAGTCTCATCGGCTCATAATTAGTCATTTCTGCTACGGTAGGAAATTGAGAGTTGATCGAAATTTATTGGAAATTATGTCCTCTTGGCTTTGGAAGAATTAGGATTCGTTTGATTAGATTGATAATCTTAAGATTCGTAGCTTAATTACCTGTTGGAGACTTGAATTTTTTCTTAGTAGTTAGAAGATATCGATCCGCTTAATCTTACTTCTGTTTCTCCGATCTGCTCGTCGGAACAGATACGCTCCGGTAAGTCTCGTTGGATTATAATTAGTCATTTCTGTTACTGTAGGAAATTGAGAGTTGATCGACGTTTATTGGAATTTTTTGTCGTCTTGGCTTTGGAAGAATTTGAATCATTTGATTAGATTGATAATTATAGGATTCATAGCTAAATTACCTATTGGAGACTTTAATTTTTTCTTAGAAGTTAGAAGATTACGATTCGCTTAATCTTATTTCTGTTTCTCCGCTCATCGGAACAGAAACTTACCGGTAAGTTCATCGGCTCATAATTAGTCATTTCTAATACAGTAGGAAATTGAGAGTCGATCGAAGTTTGTTGGAAATTATGTCCTCGTTGCTTTGGAAGAATTAGAATTCGTTTGATTAGATTGATAATTGAAGGATTCTTTTCTACTCTTTTGTCCCATTGAAAAAGTTTTTTTGTAAACTTGTTATTAAAGGTTCTTTTGTAACTTTTCATTCATCAATGAAAATATCTGTTTATAAAAAAAAATAATAATTGGAGGGTCCATATCTTAATTACCTATTGGAGACTTGAATTGTTGCTTTGAAGTTAGAAGATATGATCCTCTTAATCTAACTTGTGTTTCTGCGATCTTTGCAGTTTGGAGGAATTTGGAGCTTGGATTGAGATTTAATACGTTGATTATTGAGAAAAATTATGGTGAGGTTTCAATTTTTCGAAAGGATAATTATTTTCTGTCCTCTTGGCTTTGAAAGAATTAGAATTAGTTTGATTAGATTGATAATTATAGGATTCATAGCTTAATTTCATATTGGAGACTTGGATTGTTGCTTAGAAGTTAGAAGACGTCGATCAGCTTAATCTTCTTTTTCTGCAATCTTTGCAGTTTGGAGGAATTTGGAGCTCGAATTGAAGTTAAATTCGTTGATTATTGAGAAAAATTATGGTGAGGCTTTAATTTTCAAAGGATTATTATCTTTTTGATGTAAATGTAACATTACATATGGGAAGGGTTAAGAGTGAGAATGATATAAGGAAAGCTTATTTTGTGTTTTTTATCTGTTTAAGCAATTTCATTGGATTAATTTCATCGTATTTGGTTTGGTTGTTTTTCTCTTTATGGATTAAATTAGAACTGAGCGGGTGGTTTCATGGCAGGTTCACCACTCTAGCTTTGTGGATGTGGAAGGAATAAGCAAGGCTTGTGGGTGCCCATTACTTCCTTTGAAAAGTCATATAAAGGGCCCTGCTCCAGTTTCAGATCAAGGTTTAGCTCGACTTCTATGGATTATTTTTTTGTAAAACATCCCATCTTCGTATATGTTTTGGGATGTGCATGGTCTGGGTTGAGTTGGATTAGGAGAAACTTTTTAGCCAACACAAATTTTCGAGTTTGAATCCGTCAACTCATCCAACCTTGTGTAGTAGAGCAATACAACTCAATCCATATATTTTTGGGTTTGGTTGGGTTAGGTTATCGGTTGTAAATATTTCCAATTTATTTTGTAAAACCCCATAAATTAGTAAAAAAAATTAAGATAAGCCTAGATACCAATCTTGTTAGTGCATGCTTTGCTCCCTGTAAAAATGCTAAGAACCTAACTATGGATGCATATATATAGTATTATTCTTAGTTCGGGTTGGGTCGTACCGAACCAAAAATTGGTCAATCCATGAACCAACTCAACCTAAAGAATATTACAAAATTAGGACTCAACTCAGCCCAAAAAAAATTATAACCCAACCTTTACGGTTTAGGTTGGGTTGGGTTAGAAAATCCAAGATGCTTGGGTTGTCGGTTTTTTTGTGCAGCTTGTGTTTCTACTGAAATTTATCTTGTTTGGAAATTCACAGATAAGACTGATATTGTAGATGAAGCAATTACATTCTTTCGTGCCAATGTCTTCTTTAGAAATTTTGACATTAAGAGTCCGGCTGATAAGCTTCTGATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGACTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATCATCAACTTGGGTTTGGAGGATGTTCCCGTGCCTGGAGAGGCGAGCTTTCCCTTTCCTGGACTCTTCCCTATTCCTCAATCTAACGAGGAAGCAGGTGAAGCTCGATTTTAGTTTTCGCTTAACTGCTCAATATCTGTGTCGATATTATTTATCAACTAGATGCTTACATTATAAAGATGCTCCACTTTTCTATGCTAATCAACTATTTAATTTGCAATTAGCTCTAATTCCTGCATTCAGATTAGGTACTTTGTTCCTTTTTTCTGCATTTCACACAAAATATGTCAGTACTACATTCTTTAACTAGATGAAGATGTTTTTCCAATTCAGTTAATGCAGATATTATGGGTTCATCTTGTGTTCAATGAAATGAGCCAATAAAACTTCAGTTTCTTGACTTAAGATCAGCAATTTCATAAGTTTCAAATCTGTTTACTTTTATATGCAGAACTATTTAGGAATTACTTGAAGCAGATTAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCCAATGGGACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGACCAATTTGCTTCCCAGACTGTTAGGTTTCTATATTGACGTGGTTTCTTCTGCCCCCTTGGATGTTATATCAGTTTATGCCAATGCATACCAGTTGAAATTCAGCAGCAGTTAGGCCATAATTCTTTTCCTTTTAAAAATGATCTTAAATGCAATATGTTGTCATTTTACAAGTTTTGCACATTAATTACACTACTCCATCTTGTTCTGAAGGAATAGTTCATATCCATGTTTCTCATTGCATTGAATACCCTGTTTCTTACTCAATTCTCTAATTCTCTACATTAAGGTGATTCTTATGCTCTTCAAATTGATTTCTTCTAATCCCATACTTTGCCCTTTGCTAACGCACCCGTTGGAGGTACTCACTTTGTTGCAATTGCCCCATATTGGAAAGGTGAGAATTCTTCAACATCTTTATAAGAAATATGAGTTACTCCCGTAGTGGTTAATTGATTTTGAGGTGGAACTCCATATTATCTAATAATCGCATAGCACGGTTTTCGATGGCTGTTTATTTACCCTTTACCCTCATTAAACTTTCTGTTTGATGTTAAATAGCTTTGTTCCTCAAGGACAAAATGCATAACTTATTGTTATTACTATAGTTCATCTCTACCTGCATACTCTGAGAACATCTATTTTCAATGAGAAATGTAATTTTTGTCGAATCGGCGTATGAATGAGGAGATTGACTCTATGTTTCCTCAACGGATTATCGCCTCGACCTTTCTGTCACCCCTTTATTCCTTACTATCATATAGATATGATTGGTGTGTTTAGTCAGATTTATTTCACAGTTGCAGTTATTAATCATGTTCTTTCATTTGTCCATTGTTTGGTTTCTTCTAGTTGAAGGCTCACATATTGCAGGGACCTTCAAGTTTGAAGCAGCTGGAGCTTAGGGAAAGGAAGG

mRNA sequence

GTAAAATGGCAACAAAAAGACGATGAAGAAAATACCAGAGACGAAAACCCTTTCTCCGATCTCCACCGCTAACTTCACCGCTTTCTCTGAAATTTCCGGTGAATATTCCGGCGCCGATCCGGTCATCGGAACAGAAACTCACCGTTTGGAGGAATTTGGAGCTTGGATTGAGATTTAATACGTTGATTATTGAGAAAAATTATGGTTCACCACTCTAGCTTTGTGGATGTGGAAGGAATAAGCAAGGCTTGTGGGTGCCCATTACTTCCTTTGAAAAGTCATATAAAGGGCCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTAGATGAAGCAATTACATTCTTTCGTGCCAATGTCTTCTTTAGAAATTTTGACATTAAGAGTCCGGCTGATAAGCTTCTGATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGACTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATCATCAACTTGGGTTTGGAGGATGTTCCCGTGCCTGGAGAGGCGAGCTTTCCCTTTCCTGGACTCTTCCCTATTCCTCAATCTAACGAGGAAGCAGAACTATTTAGGAATTACTTGAAGCAGATTAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCCAATGGGACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGACCAATTTGCTTCCCAGACTGTTAGGTTTCTATATTGACGTGGTTTCTTCTGCCCCCTTGGATGTTATATCAGTTTATGCCAATGCATACCAGTTGAAATTCAGCAGCAGTTAGGCCATAATTCTTTTCCTTTTAAAAATGATCTTAAATGCAATATGTTGTCATTTTACAAGTTTTGCACATTAATTACACTACTCCATCTTGTTCTGAAGGAATAGTTCATATCCATGTTTCTCATTGCATTGAATACCCTGTTTCTTACTCAATTCTCTAATTCTCTACATTAAGGTGATTCTTATGCTCTTCAAATTGATTTCTTCTAATCCCATACTTTGCCCTTTGCTAACGCACCCGTTGGAGGTACTCACTTTGTTGCAATTGCCCCATATTGGAAAGGGACCTTCAAGTTTGAAGCAGCTGGAGCTTAGGGAAAGGAAGG

Coding sequence (CDS)

ATGGTTCACCACTCTAGCTTTGTGGATGTGGAAGGAATAAGCAAGGCTTGTGGGTGCCCATTACTTCCTTTGAAAAGTCATATAAAGGGCCCTGCTCCAGTTTCAGATCAAGATAAGACTGATATTGTAGATGAAGCAATTACATTCTTTCGTGCCAATGTCTTCTTTAGAAATTTTGACATTAAGAGTCCGGCTGATAAGCTTCTGATCTATTTGACATTCTACATCAATGTGGCTTTGAAGAGACTTGAAGGTTGCAGAACTTTGGCTGTAGGAACTAAGGCAATCATCAACTTGGGTTTGGAGGATGTTCCCGTGCCTGGAGAGGCGAGCTTTCCCTTTCCTGGACTCTTCCCTATTCCTCAATCTAACGAGGAAGCAGAACTATTTAGGAATTACTTGAAGCAGATTAGAGAAGAAACAAGTGGGAGACTCTTGAGTGTTGCCTATAGAGCCAATGGGACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCATCATTCCTTGA

Protein sequence

MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPIPQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP

Homology

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BLAST of Sed0005481 vs. NCBI nr
Match: XP_008457213.1 (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 170/174 (97.70%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE+ FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

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BLAST of Sed0005481 vs. NCBI nr
Match: XP_038889879.1 (actin-related protein 2/3 complex subunit 3 [Benincasa hispida] >XP_038889880.1 actin-related protein 2/3 complex subunit 3 [Benincasa hispida])

HSP 1 Score: 351.3 bits (900), Expect = 4.8e-93
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE+ FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYLKQIREETSGRLLSVAYR+NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRSNGTPNKWWLAFAKRKFMNIIIP 174

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BLAST of Sed0005481 vs. NCBI nr
Match: XP_022938181.1 (actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_022965982.1 actin-related protein 2/3 complex subunit 3 [Cucurbita maxima] >KAG6586375.1 Actin-related protein 2/3 complex subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.5 bits (898), Expect = 8.2e-93
Identity = 169/174 (97.13%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

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BLAST of Sed0005481 vs. NCBI nr
Match: XP_023536665.1 (actin-related protein 2/3 complex subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92
Identity = 168/174 (96.55%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEA+LFRNYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEADLFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

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BLAST of Sed0005481 vs. NCBI nr
Match: XP_022143039.1 (actin-related protein 2/3 complex subunit 3 [Momordica charantia])

HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 166/174 (95.40%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EG++KACGCPLLPLKSHIKGPAPVSD+DKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGVNKACGCPLLPLKSHIKGPAPVSDEDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEA++FRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEADVFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

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BLAST of Sed0005481 vs. ExPASy Swiss-Prot
Match: Q1ECJ7 (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 8.0e-91
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVD EG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLED+PVPGE  FPFPGLF +
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 174
           PQS +EAELFRNYLKQ+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

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BLAST of Sed0005481 vs. ExPASy Swiss-Prot
Match: Q9JM76 (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 158.3 bits (399), Expect = 7.9e-38
Identity = 79/170 (46.47%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 3   HHSSFVDVEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 62
           +HSS +D +  +K  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 63  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPIP 122
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ + P+PGE  FP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 123 QSNEEAELFRNYLKQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 171
            S +E E+ R YL+Q+R+ET  RL    +   +  P+KWW  F KR+FMN
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

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BLAST of Sed0005481 vs. ExPASy Swiss-Prot
Match: Q3T035 (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 78/170 (45.88%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 3   HHSSFVDVEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 62
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 63  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPIP 122
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ + P+PGE  FP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 123 QSNEEAELFRNYLKQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 171
            + +E E+ R YL+Q+R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Sed0005481 vs. ExPASy Swiss-Prot
Match: O15145 (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 78/170 (45.88%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 3   HHSSFVDVEGISKACG-CPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDI 62
           +HSS +D +  +K  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 63  KSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPIP 122
           K+ AD+ LIY+T YI+  LK+L+ C + + G K +  LG+ + P+PGE  FP   ++  P
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 123 QSNEEAELFRNYLKQIREETSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 171
            + +E E+ R YL+Q+R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

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BLAST of Sed0005481 vs. ExPASy Swiss-Prot
Match: A1DPK7 (Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3-a PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-35
Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 21  LLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFDIKSPADKLLIYLTFYINVAL 80
           +LP++S  KGPAP   +D TDI+DEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  L
Sbjct: 21  MLPIRSQFKGPAPRETKD-TDIIDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 80

Query: 81  KRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPIPQSNEEAELFRNYLKQIREE 140
           K+L+ C +   G K +  LG+ + P+PGE  FP   ++  P + +E E+ R YL+Q+R+E
Sbjct: 81  KKLQKCNSKGQGEKEMYTLGITNFPIPGEPGFPLNAMYVKPSNKQEDEVMRAYLQQLRQE 140

Query: 141 TSGRLLSVAY-RANGTPNKWWLAFAKRKFMN 171
           T  RL    +      P+KWW  F KR+FMN
Sbjct: 141 TGLRLCDKVFDPQTDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Sed0005481 vs. ExPASy TrEMBL
Match: A0A1S3C5N9 (Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496939 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 170/174 (97.70%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE+ FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Sed0005481 vs. ExPASy TrEMBL
Match: A0A6J1HLS5 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111465702 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.0e-93
Identity = 169/174 (97.13%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Sed0005481 vs. ExPASy TrEMBL
Match: A0A6J1FCE9 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111444343 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.0e-93
Identity = 169/174 (97.13%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYL+QIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Sed0005481 vs. ExPASy TrEMBL
Match: A0A6J1CN65 (Actin-related protein 2/3 complex subunit 3 OS=Momordica charantia OX=3673 GN=LOC111013027 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.5e-92
Identity = 166/174 (95.40%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EG++KACGCPLLPLKSHIKGPAPVSD+DKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGVNKACGCPLLPLKSHIKGPAPVSDEDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGE  FPFPGLFPI
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGELGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEA++FRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEADVFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Sed0005481 vs. ExPASy TrEMBL
Match: A0A0A0LI55 (Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G008100 PE=3 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.6e-92
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MVHHSSFVD EGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKS ADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLE+VPVPGE+ FPFPGLFPI
Sbjct: 61  IKSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 175
           PQSNEEAELFRNYLKQIREETSGRLLSVAYR NGTPNKWWLAFAKRKFMNIIIP
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Sed0005481 vs. TAIR 10
Match: AT1G60430.1 (actin-related protein C3 )

HSP 1 Score: 334.3 bits (856), Expect = 5.7e-92
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVD EG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLED+PVPGE  FPFPGLF +
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 174
           PQS +EAELFRNYLKQ+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

[Close]

BLAST of Sed0005481 vs. TAIR 10
Match: AT1G60430.2 (actin-related protein C3 )

HSP 1 Score: 334.3 bits (856), Expect = 5.7e-92
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MVHHSSFVDVEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60
           MV+HSSFVD EG++KACGCPLLPLKSHIKGPAPVS+QDKTDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDVPVPGEASFPFPGLFPI 120
           IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLED+PVPGE  FPFPGLF +
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIII 174
           PQS +EAELFRNYLKQ+REETSGRLLSVAYRANGTPNKWWLAFAKRKFMN+++
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173

The following BLAST results are available for this feature:

BLAST of Sed0005481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457213.1	2.2e-93	97.70	PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo]	[more]
XP_038889879.1	4.8e-93	97.13	actin-related protein 2/3 complex subunit 3 [Benincasa hispida] >XP_038889880.1 ...	[more]
XP_022938181.1	8.2e-93	97.13	actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_...	[more]
XP_023536665.1	1.8e-92	96.55	actin-related protein 2/3 complex subunit 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022143039.1	3.1e-92	95.40	actin-related protein 2/3 complex subunit 3 [Momordica charantia]	[more]

BLAST of Sed0005481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECJ7	8.0e-91	90.17	Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q9JM76	7.9e-38	46.47	Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE...	[more]
Q3T035	1.0e-37	45.88	Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 ...	[more]
O15145	1.0e-37	45.88	Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=...	[more]
A1DPK7	2.8e-35	45.70	Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3...	[more]

BLAST of Sed0005481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5N9	1.0e-93	97.70	Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1HLS5	4.0e-93	97.13	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FCE9	4.0e-93	97.13	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CN65	1.5e-92	95.40	Actin-related protein 2/3 complex subunit 3 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A0A0LI55	2.6e-92	96.55	Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]

BLAST of Sed0005481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60430.1	5.7e-92	90.17	actin-related protein C3	[more]
AT1G60430.2	5.7e-92	90.17	actin-related protein C3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007204	Actin-related protein 2/3 complex subunit 3	PIRSF	PIRSF016315	p21-ARC	coord: 1..173 e-value: 8.2E-68 score: 225.6
IPR007204	Actin-related protein 2/3 complex subunit 3	PFAM	PF04062	P21-Arc	coord: 3..170 e-value: 4.1E-62 score: 209.3
IPR007204	Actin-related protein 2/3 complex subunit 3	PANTHER	PTHR12391	ARP2/3 COMPLEX 21 KD SUBUNIT	coord: 1..171
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	GENE3D	1.10.1760.10		coord: 1..173 e-value: 1.2E-65 score: 222.6
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	SUPERFAMILY	69060	Arp2/3 complex 21 kDa subunit ARPC3	coord: 3..170
None	No IPR available	PANTHER	PTHR12391:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 3	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005481.1	Sed0005481.1	mRNA
Sed0005481.2	Sed0005481.2	mRNA
Sed0005481.3	Sed0005481.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0015937	coenzyme A biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0042995	cell projection
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004594	pantothenate kinase activity