Sed0005468 (gene) Chayote v1

Overview


Name	Sed0005468
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein kish
Location	LG03: 41987738 .. 41989750 (-)
RNA-Seq Expression	Sed0005468
Synteny	Sed0005468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTCCTGCTATTCTTGAACAGAGAAATGGGTATTTTCTTCTTGTCTCTTATGCTATATACTGCATTGGGATAAAATTAGATAATCAGGTCTCCAGCATGTTGGCTACCTGTTTTGATTTTCCATTCATGCTGCTACTTTTTTTTTTTTTTAATAATATCTTTGAGTGTTCGAGCCCGCTTACGTGCATCTCGACTATTCTCGCAAGACAAACTGCGAACCTACAATATTTAGATGTCGAGTAAAGTTCTAGTTTGATACTTTTGGAACGAATTGGATGCTTGTAGAGACCAGTGTTTTAAAAGGCGCGCCTAGGCGTGCCTGGGCTTAAGTCCCACCTTTTGCGCTTCGCTTGTCCCAGGCGAGGCACATGTAATAAGGCGCGCACCTTATGGCGCCTTACGTGAAGCCCTGGGCGCCAAAAGGCGCGTGCCTCGTGGGCTTTTTAATTTTCCTTTGCGTTTTTTGTATTTCAGATCCACGTACTAGGTCATTTGAAGCGCATGAAGGTTGATAGTTGAATATTATGTATGTTTTATACATTATTCTTGGTTAAAACTTCATTTATGTCCATGTAAAGTGTTTTTATTGTGTATACACACATATATATAAATATTTTTTGTTTTTTTATATATTGCGCCTTAAGTAAAAAAGCCCTCACCTTTTGTTGCGCCTTGCGCCTCAGGCTCCAGATGGCCATTGGGCCTTAATACGCCTTGCGCTTTCTTGCGCTTTTTAAAACACTGGTAGAGACCCCATTCTTTACCATACTTTGTATATTTATATTTCCTCTACACTATGCTAGCTGTTTATTTATGTTAAAATGAAGCTATTAGTCACTGACATGCTTGATCTTGGTGTGCAAAATCAATACCTCTTATTTTCAAAATGCGGTGCCATTATAAATCCTGTATTGGTTTTTAATATAGTTGCTCATCTGACAGGTTCCGAGGCTTCTTTTGGAAAGCAGCCAGAATAGGTAGGATTCTTGGTTAAATTTGCACAATTGCTTATAAGATGTCTTTTCCTCTAACAATTCGAGTTTTATTTATTTATTTTTAACTGAAATTTTTCTTTTTTTTTCTACTCTTTGTTTTTTCCAGCATTTCTTTTTCTTATGAGTTTGAATCTCTGATGTTAACAATTCTACTCTATGATTTGACCTCTTGACTTACATTTCTCTCAACGGTATCTTTGACCAATAAAATGTCGTAGAGGGCTAGAAGCAACTCTTTACTTTAATAAACAACCAAGGGATTCGCAAATCCTGCAGATGTAGACGTAGAGTGCATAGAGCCTTGAATCTAAATACATTACCCACAATGGAAGTAAACATGTTAGTATCAGAACCTTCTTCAAAAAGGTCAAAGGGATAAAAATATTTTGTTGTGAATGAACAAGATATTGAGGAAATGTCCATACATAAAATCATAATTATTGGTACCGGTACCGGACTTTTCCACATAATTCACATAATGCTGTCTTTGAGAGCTTGAAACCTGTTCTGGCAGGGTTCAGGTGTCTCACATTTGTATTTTCCTTTTTCGGTGATTTCTTCAACAAAAAAAAAGGGGGTTTAACTGCAAAAGAAAAAGAAGAAAAAGAAGAAAAATTGACCATATTAGATTTCAATTGATTAGCAGGGTGTCTATATTTGTATTTATATACACAAAGCCACACAATAGGGTAAATGGAAGAAAGAAATAAAATCTTAGTTAAACTTATGTTAATTTGTATGGGATCCATACCTGGAAAAATTTCCTGCAAGTCATCTTGATAGCCATAAGTGGTACAATTAGGTGGTTGACACGTAAAAATAGTTGAAATGCATGTATGTTGATCCGAATACTCATGGATGTATGTATGACATAGATTTTGTTGTGAAATATTCAACATCATGCATTATTATCTGACAGGATGATGTTCTGGTTTGTGAATCAGGTGAACGCTTGAGTCCTTGGGTAGCTGTGGGATGCTTCTCAATGGGAGTCTCAATAATTTTCTTCTGA

mRNA sequence

ATGCAATTTCCTGCTATTCTTGAACAGAGAAATGGGTATTTTCTTCTTGTCTCTTATGCTATATACTGCATTGGGATAAAATTAGATAATCAGGTCTCCAGCATGTTCCGAGGCTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTGAGTCCTTGGGTAGCTGTGGGATGCTTCTCAATGGGAGTCTCAATAATTTTCTTCTGA

Coding sequence (CDS)

ATGCAATTTCCTGCTATTCTTGAACAGAGAAATGGGTATTTTCTTCTTGTCTCTTATGCTATATACTGCATTGGGATAAAATTAGATAATCAGGTCTCCAGCATGTTCCGAGGCTTCTTTTGGAAAGCAGCCAGAATAGGTGAACGCTTGAGTCCTTGGGTAGCTGTGGGATGCTTCTCAATGGGAGTCTCAATAATTTTCTTCTGA

Protein sequence

MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFSMGVSIIFF

Homology

[Close]

BLAST of Sed0005468 vs. NCBI nr
Match: KAG7020134.1 (Protein kish-A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 30 MQFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 74

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 90 MGVSIIFF 74

[Close]

BLAST of Sed0005468 vs. NCBI nr
Match: XP_022951814.1 (protein kish-like [Cucurbita moschata] >KAG6585214.1 Protein kish-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MQFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. NCBI nr
Match: XP_023002171.1 (protein kish-like [Cucurbita maxima] >XP_023536957.1 protein kish-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MQFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. NCBI nr
Match: XP_004144193.1 (protein kish [Cucumis sativus] >XP_008445493.1 PREDICTED: protein kish isoform X3 [Cucumis melo] >XP_022131327.1 protein kish [Momordica charantia] >XP_022961720.1 protein kish-like [Cucurbita moschata] >XP_022961721.1 protein kish-like [Cucurbita moschata] >XP_023545685.1 protein kish-like [Cucurbita pepo subsp. pepo] >XP_023545686.1 protein kish-like [Cucurbita pepo subsp. pepo] >XP_038884397.1 protein kish [Benincasa hispida] >KAG6598616.1 Protein kish-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/68 (64.71%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          M FPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MHFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. NCBI nr
Match: XP_022997301.1 (protein kish-like [Cucurbita maxima] >XP_022997302.1 protein kish-like [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 44/68 (64.71%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          M FPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MHFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot
Match: B5G2S6 (Protein kish-A OS=Taeniopygia guttata OX=59729 GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 28 LDNQVSSMFRGFFWKAARIGERLSPWVAVGCFSMGVSIIF 68
          LD   S +  G FWK ARIGER SP+VAV C  M  SI+F
Sbjct: 32 LDKNKSGLL-GIFWKCARIGERKSPYVAVCCVVMAFSILF 70

[Close]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot
Match: Q9VWH8 (Protein kish OS=Drosophila melanogaster OX=7227 GN=ksh PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0


Query: 36 FRGFFWKAARIGERLSPWVAVGCFSMGVSIIFF 69
          F G FWK ARIGER SPWV   C  M  +++F+
Sbjct: 39 FMGTFWKLARIGERKSPWVGAACLIMAFTVLFW 71

[Close]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot
Match: Q148I3 (Protein kish-A OS=Bos taurus OX=9913 GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 38 GFFWKAARIGERLSPWVAVGCFSMGVSIIF 68
          G FWK ARIGER SP+VAV C  M  SI+F
Sbjct: 41 GIFWKCARIGERKSPYVAVCCIVMAFSILF 70

[Close]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot
Match: Q8TBQ9 (Protein kish-A OS=Homo sapiens OX=9606 GN=TMEM167A PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 38 GFFWKAARIGERLSPWVAVGCFSMGVSIIF 68
          G FWK ARIGER SP+VAV C  M  SI+F
Sbjct: 41 GIFWKCARIGERKSPYVAVCCIVMAFSILF 70

[Close]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot
Match: Q5RAL1 (Protein kish-A OS=Pongo abelii OX=9601 GN=TMEM167A PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-04
Identity = 20/30 (66.67%), Postives = 22/30 (73.33%), Query Frame = 0


Query: 38 GFFWKAARIGERLSPWVAVGCFSMGVSIIF 68
          G FWK ARIGER SP+VAV C  M  SI+F
Sbjct: 41 GIFWKCARIGERKSPYVAVCCIVMAFSILF 70

[Close]

BLAST of Sed0005468 vs. ExPASy TrEMBL
Match: A0A6J1KKJ8 (Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111496111 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MQFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. ExPASy TrEMBL
Match: A0A6J1GJV2 (Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111454546 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 45/68 (66.18%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MQFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. ExPASy TrEMBL
Match: A0A6J1K4M0 (Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111492246 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/68 (64.71%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          M FPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MHFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. ExPASy TrEMBL
Match: A0A6J1HB53 (Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111462406 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/68 (64.71%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          M FPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MHFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. ExPASy TrEMBL
Match: A0A0A0KGV9 (Protein kish OS=Cucumis sativus OX=3659 GN=Csa_6G365220 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 44/68 (64.71%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          M FPAILEQRNG                       FRGFFWKAARIGERLSPWVAVGCFS
Sbjct: 26 MHFPAILEQRNG-----------------------FRGFFWKAARIGERLSPWVAVGCFS 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. TAIR 10
Match: AT5G20165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 8.4e-15
Identity = 40/68 (58.82%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFLLVSYAIYCIGIKLDNQVSSMFRGFFWKAARIGERLSPWVAVGCFS 60
          MQFPAILEQ+ G                       FRGFFWKAARIGERLSPWV+ GCF 
Sbjct: 26 MQFPAILEQKTG-----------------------FRGFFWKAARIGERLSPWVSAGCFM 70

Query: 61 MGVSIIFF 69
          MGVSIIFF
Sbjct: 86 MGVSIIFF 70

[Close]

BLAST of Sed0005468 vs. TAIR 10
Match: AT5G20165.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653). )

HSP 1 Score: 43.5 bits (101), Expect = 7.8e-05
Identity = 29/61 (47.54%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1  MQFPAILEQRNGYFL------LVSYAIYCIGIKLDNQVSSMFRGFFWKAARI-GERLSPW 55
          MQFPAILEQ+ G         L  ++ YC   +L      MFRGFFWKAARI    L P 
Sbjct: 26 MQFPAILEQKTGIVFCQIKDALSDFSAYCY-FRL-----QMFRGFFWKAARIDSNALKPM 80

The following BLAST results are available for this feature:

BLAST of Sed0005468 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020134.1	3.3e-13	66.18	Protein kish-A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951814.1	3.3e-13	66.18	protein kish-like [Cucurbita moschata] >KAG6585214.1 Protein kish-A, partial [Cu...	[more]
XP_023002171.1	3.3e-13	66.18	protein kish-like [Cucurbita maxima] >XP_023536957.1 protein kish-like [Cucurbit...	[more]
XP_004144193.1	1.3e-12	64.71	protein kish [Cucumis sativus] >XP_008445493.1 PREDICTED: protein kish isoform X...	[more]
XP_022997301.1	1.3e-12	64.71	protein kish-like [Cucurbita maxima] >XP_022997302.1 protein kish-like [Cucurbit...	[more]

BLAST of Sed0005468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B5G2S6	2.9e-04	57.50	Protein kish-A OS=Taeniopygia guttata OX=59729 GN=TMEM167A PE=3 SV=1	[more]
Q9VWH8	2.9e-04	54.55	Protein kish OS=Drosophila melanogaster OX=7227 GN=ksh PE=3 SV=2	[more]
Q148I3	5.0e-04	66.67	Protein kish-A OS=Bos taurus OX=9913 GN=TMEM167A PE=3 SV=1	[more]
Q8TBQ9	5.0e-04	66.67	Protein kish-A OS=Homo sapiens OX=9606 GN=TMEM167A PE=1 SV=1	[more]
Q5RAL1	5.0e-04	66.67	Protein kish-A OS=Pongo abelii OX=9601 GN=TMEM167A PE=3 SV=1	[more]

BLAST of Sed0005468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKJ8	1.6e-13	66.18	Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111496111 PE=3 SV=1	[more]
A0A6J1GJV2	1.6e-13	66.18	Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111454546 PE=3 SV=1	[more]
A0A6J1K4M0	6.1e-13	64.71	Protein kish OS=Cucurbita maxima OX=3661 GN=LOC111492246 PE=3 SV=1	[more]
A0A6J1HB53	6.1e-13	64.71	Protein kish OS=Cucurbita moschata OX=3662 GN=LOC111462406 PE=3 SV=1	[more]
A0A0A0KGV9	6.1e-13	64.71	Protein kish OS=Cucumis sativus OX=3659 GN=Csa_6G365220 PE=3 SV=1	[more]

BLAST of Sed0005468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20165.1	8.4e-15	58.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20165.3	7.8e-05	47.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13229:SF15	PROTEIN KISH	coord: 34..68
None	No IPR available	PANTHER	PTHR13229	PROTEIN KISH-A	coord: 34..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005468.1	Sed0005468.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane