Sed0005465 (gene) Chayote v1

Overview


Name	Sed0005465
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ubiquitin receptor RAD23
Location	LG08: 28247147 .. 28257305 (-)
RNA-Seq Expression	Sed0005465
Synteny	Sed0005465

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTACAATAAGAGGCACCAAAGGATCCAATCTAGTAAATAACTCCTAAATAGTAGTTATAAAAAAGCTTAGTCACTGGCCCAAAAGGGCATCCTCGTTTTAAGGCCCAAGGCTTCCTACGTAGGCTCCCTTGGAAGTCTGAGCTTCGAGATCCATGCGTTTAGCTTAATCGTAAAATTTCTTGTTGTCCCCCGTATCCAAACCTTGAGATGGGCTCGAGTACCCCAGAGTCTATGGGAGTGAAGCTTTGATTCTTGATCATAAAAAAAAAATGCTTAGTTATTGTGGCCCATAGAGAAACATTGAATCTAATGAGGGCTCAAACATCAACGAAAGATCTCTCCACCTTTTAAAGATTCTATTATTTTTCTCACTTTAGAGACCCAACAATATCGCTGCACACTCCTTTTCATAAGAACTCCCACTTGTTACGAGTGGGAGGATAAACAAAAAGTTCTATGATCCTCTCTCTACAACCCCTTGGTCTTGCTAGCCCCAAACCAAACAACTCAAAATCTTTGCTCCACTCCTCAGAAGCCATCTCATAGCCCTACTAAAAAAACTGGCTCCACGCGTCGGAGGCCATCTTGCAAAAGGCGGATGGAAAGGAAAATGAATGACAAGAAAAATCCTATGCTGGACTTTAGACCCAACAATGAATATCTATGTGACCCAAATCACAACAAAAGTCCCCCGTGAGATTAAGGAGAGCGACATCATCCAACATCTTCCTTTCTTAGGAAGTTGGAAACTCAAAGAGAGAAGGATGATGTCTTAGAAGAGCTAGCATATCTGCCACCATATATTCTTTCATTAGAGATATATGTATCAACCCTCTCCAAAAAAGAGATGTATGTATCAACCTAAGAAACAAAGAGCTTAGCCTCTTAGAGAACAAACCACTGTTTTCCTGCTTCCAAATCCACCGATCTTCAGCAAAAAAGAGTAGTACTCTAGTGGTATCATGTATCACTTGGTAACCAGTTGATTATGAGTTCGAGTCTTAAATATTGTTGAATTCAAAAAAAAAAAAAAAAATCCACCGATGAAGAGCTTAACAGTCAATCAAGCTGGAAAAAATTGCTTATACACAAGTTGAATATCTCTAACATAGAAATGACTCCATCGTTTTTATTGTTTATTTTTATTAAATATTCTACCTTTTGTCTACCTAACTAGGTATTGAGTATAAAGAAAAACATTGAAGATGTACAAGGAAAAGATAGTTATCCTTGTTGCCAACAATTGTTAATCCACAATGGGAAGGTGTTAAAGGATGAAACAACGCTGTCAGAGAACAAGGTTACTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGGTAAGTTGTGTGTAGCTAACGTGGGTATCCTTTGACAAACAATTAAGCTGCCTTTCTGACTAATATCTTGCTTCATTTATGAATGGTAGACTAATGCACTAAACAAATATTTTTAAAAAAATTAAATGATGATGGTGCATAATACACTACACGTTAATCTTAATTTTTTTTTTATCATGAGAACTTATAATTGGAATCTTTTTAGGCCGCTATTAGCATCCATCTTGTTGTTACAATGGTCTATTGGTTGTTGATGTCCTACGTCTTTTAATGTGTGAAGTTATATTGATTGTAATTGAAAATCAAGGGTAATTATTTTAATGTGTTGTACTTATTTGATAAACATGATACATTTGGTAAAAGATATTTTCACGTTGGGATGTTTTGCTAAAAATAACTAAATTATGAATAATTTATGTTTAGGATTCCTGTAAAATAAAAGGGAATCATTCTCTTTGGACACACTAAAATTTAATTTTGATGATATTCAATAAAAAAAAAAATTTAGCTTGTCGTTTTAAATAGAGAAGAAATTTCATGATTGTCTTAATTTCGAATAATCGTTTTATCCTCAAGAGGTGGTAGGATGATCGAAGACTTGGACTTTGAATGTGTCCTCCGCTCAAGGTCCCAAGTTTGAAACTTGTGACATTAATTTATAAACACCTCCTATGTTTCCATTCATTTGATGTCTCTTGGTACCTGGCCTAGGAACATGCATGGTTACTCTGGTTAAAGTATAGCAAAGCTTCGATTTTCTGGTTCCAAAAAAAAAGAAAATTCAAATAATTTTTTAAAAATTGATACTTCCTACAATTATAAATTGATACTTCCTAGAATGTCCAAATCAATGTTGTTCTTTATGACATAATATTTCAAAATAGTGGCTTGACGTTTATATTTCGTTATGTTAACATGCCTTTATCGATACATTGACTACCAAATGTAAGATTAGGTGGTTGTCTTGTGAGAATAATTGAGGTATGCATAAGCTAAGCCAGACAGACATTCACAAGTTAGCATGCCTAGATTTAAAAAAAAATCGATTTGTCTAATATTTTCTTCAGGCTGTTAATTTTTTTTTCATTTGGGTTAAGGTTAATCTCTTAGTGATAGTTGTTGAACAAGATCTTTTTTGTCACTAGAGTTGTCTAGTACTCCAATGCTGTAGATCTTTGGAGAATCTGAAGCCTAGATTTTCTTGTAGGAAATAGTATGAATCGTTATTTTTCTGCTTGATGTTAACTACCTGTTTTGTTTTAGATGATATCTTTAGTGGTCCTATAAAAGGAGGAGCTATATGAAACACGGACATGCGAAAATGGGGAAGAATTTTTGTCAGACACGTATCGGACACAGATTCGTTCGAACGCCTTGGATGTGTGTCTGACACACAAATATCAGTATCCCTAATTTTGTAGTTTTTTTTTCCTTCAAATTTTGAACACTTGAGGTACTATACACTCCACAGACACATCACGAACATGCCTCCATGCAAGTAGTCGACAACAGAATAATGACGTTGGCAGAGTGGTCGCCATCGTGGAAGAATCCATCAGAGGTAGAGGGGGGGAGATCGAAGGAAAGAAGAATCTAGAGGGGGAGGGAAATCAAAATGGGAGAGGGAAAGCAAAATTTATGACTTATTGAGTTTTATGTAGTTTTAAATTTTAAACTAAATTCAATGGAAAATTAAAATTTCATTCACAATTTTTTAATTTTAATTATTCTTAATAGTTAGTAAAAAAAACTTAACTTAGTAGTTGCATGTTATCCATGGATATCTGAAGAATTTTGGTTAAATTTCAGTCTGAGTCTAAGTCAGGCATACGTTTACTTCATTGTCGTCCCCTAAATTCATATGGTTTTCAAATTTTTTGCTCACTGATTTCCTTTATACAGAGTAAAACACAAGGCTCAACTGGGTCATCGTCTACTCAGGTAAAATATCTTTATTCATTTCATTTGCGGGGTCATAATGTAACTAATATATTGCTCTTTCAATTGGTCTATATATCGAATTGACAGACAACTACCGATGTACCTACAATTACTCCAACACCAAATTCTACTTCGATTCCAGAAGCTCCCACACAACCAGAGTGAGTCTATTGATGATGCCAGCTCCTACTATCCTTTACCCCTCGGCTGCATACTAGCTTGATAATCCTATATTGTTGTTTGTTTGTGACTTTAGCAGAGCCTCGAGGAATGTTGCTACTTCTGATGTGCCAACTGCAAAGTATGAACTTAGTTTCTTCTTTATTGTTTATCATTTTGTATCTATAATTTGCTATTTGAAAGTTTTTTTGTTAGCTCTTGGAGTTCCTTATTTGACTAGGACAAATGCTCAAATATTAATGGCATGAAGTATCGAATGTTTTGGTATATTGTGAAGTTTTTTTGTATAAGAGATGATTTTTATTCATAATGAATTGAAGGTACATTTATGCATAGAGCATTCTAACTAACTATACTATAAATAGTATAGACTAAATATAGATAACCAACTACATTGAGCATCTAGGAAAAAGAGTTACAATAGAGAGAAAATAGGGAAATAAGTTATAACAGCTTGCTTGAATTTCTACACCCCCCCTCAAGCTGGGCGATATATGCTTGTCATGCCGAGTCTGAGATTTAACTCACCGAGACTGGGTCGATGTAGTGCTTTAGTCAAGATATCTACAACCTGTTGTTGAGAGGGAACATACCTCACTGTAATATCGTTGGCTTCAATATTCTCACGAATGAAATGATGATCTTTCTCAACGTGTTTCATTCTGTCATGATGTACTTGATTTTTTGCAATAGCTATAGCTGATTGATTGTCACACAACATTTCTACATGACCTTCTATCTTTACTTTTAGTTCAGTGAGAAGACGTTTTAACCAAATTCCTTCACATATTCCATGAGCTAGTGAACGAAACTCAGCTTTTTGCACTACTTCGTGCGACTACTTGCTGCGCCAGGTGACTAGATTTCCCCACACATAAGAGCAATATCCTGATATAGACCTATGATCCACATGAGAGCTAGCCCAGTTTGCATAAGTGAAGACTTCTAATGATTGGTTTGTGTTTTTTTTTTAACATAAGATCCTTCCCAGGATCATTCTTGAGATGCCTCAATATTCTATACACAGCTTCCATATGTTCTCTAGAAGGTTTATTCAGAAACTGGCTCACGACGCTTACTGCAAAGCTAATATCCAGTCGAGTATGAGTTAAATAAATTAGTTTTCCAACTAATTGTTGATATCTACCACGATCAACTACCTCATCTTCAGGATTGACTCCTAACTTTGTATTTGCATTCATAGGTGTGTCTACAAGTTTACAACCACTCATTCTTGTCTCTTTCAAGAGGTCTAACGTATATTTTCGTTGAGTCACAGAGATTCCTTGGCTTGACCTTGCTACCTCCATTCCTAGAAAGTATCTCAAATGGCCTAAGTCCTTCACTTCAAACACTCTGGAGAGCAAGTTTTTTAGGCGGACTATTTCTTCAGATATATTTCCTGTGAGAACAATGTTGTCGACATACACTATCAATACACAGCTTTGTTAGGTGAAAAATTCTTAATAAATAGAGTGTGATCTGATTGGCATTGGGTGTAATCATTTTGCTTTAATACAGTTGCGAATTTTTCAAACCAAGCCCGAGGCGACTGTTTTAGCCCATAGAGAGATTTCTTAAACCTACATACCTTTCCACTTGTGTACCGATCTTCAAAACTAGGAGGAACATCCATATACATCTCTTCAGCCAAGTCACCATTCTAGAATGCATTTTTTACATTAAGTTGGAATAATGACCAATCCAAATTAGAAGAAATAGAGAGAAGTACTTGGATAGTATGTAGCTTGGCAACAGGTGCAAACGTTTCTTGATAGTCAATCCCATATGCTTAGGTGAACCCTCTAGCCACCAAACGAGCTTTGAATCGTTCTATACTGCTGTTTGGTCTATGCTTGATAGTGAAAACTCATTTGCATCCCACTGTACGTTTTCGTGGAGGCAAATCAATAAGAATCCTCTAGTGTGGCTGCTTTCCATTCAGGTCTTCATAAGGCCTCTTGTACAATATTAGGAGTTTGTATTCGATCTAATATTGTCACAAAAGCTTTGAACATTGGTGACAGGTTACTGTAAGCCAAATGATAATGTATCAGATGTTATATACATGATCGAACACCTTTCCTTAAGGCAATAAGGTCTATCTAGATCATCTTCTATAGTCTCGGGCAATGTTTTAAAAAGCTTAAGGCGGTATGAGGCATAAGCCTCATTTTAAATTTAAAAATACATATTTAAATCATAAAACATGGAACCTTTTGTATTTATAACCATGTAATACTTCTTAAAACTTAATATATATATATATATATATATATAAATGTGCTTATAAAAAAGAAAAAAATAAATTACAATAAACAAATATAATAAAAATAAAATAAGATACTAAATTGCTATTCTAAAATATGATAAGAATAATAGTACGGTAAATAGTAAAAATGCTAAAAATTTAGAGCATAAATTGATGGTAAATTATTTATGGGTCTTTAACCATTTGAACATTTAATAAAAAAAAAAAATTAAAAGAAATAAAACCATAGATTTAAAGAATGTCAAAAATCAATTGTCTTGAGCCAGACATATGTCAATAAAAATTTAATTTAAATAGTATTTTAGTCTTTTTTTAAGTTTTCTATGTAGCTGTCTTTTCATTTACTATTTTCCTTTTATATTAATTATTCTTTTAACTCTACATTTTCATTTAACGACTATTCTTCTTCTTCCCTCTTCTCTTTCTTTCTTTCTTTTTTACTTTTAGTTTATCACTTTTCTCCTCTTCTCAAATGGGTTATAGTCGAAGCTTGTCACAAGTTTTAGGTTTGTATGATTTTTTAAATTTCTTTTTTTGTTTGTCAGAAGCAAATCGTTGCCTCAGAAGGTGAAAATCAAGGCTTACGCCTTTAAGCCTTTGAGGCGGTAGCTCAAAGGCGTACGCCTTGAGGTTTTTTCGTTCTGCCCTCGAGGCACACCTCTAGGCATACGCCTCTTACGATTTTTAAAACGCTGGTCTCAGGTACTACTTCAGGGACATTGAGATTTTGGTTTAGATCATAGCCTTCTTGAGTATGTGAAGGTTGTTCCTCTAGCTGCCTGGTTCTTCGTGAATAACCTATAATTCAGCTTGGGGATTTGACTCTAGAGGGCTATCAACTAAGTTAGGGAGAGGGTTTGACTCAGTAAGGCTATCAACTAAGTTAGGAAGAGGGGTTGACTTGGGTAGCGGATCAGGTGAAAAATCAGGAAAGAGTACTTCAGAAGAACGAAGTGGAATACAGTCCAAATTCTGGGGTTCAATGTCATAGTGCTCCCTTGAACTGCAGAAGTGGGAAAATAGGATTGGTTTTCAAAGAATGTGACATCCATGATATGAAAGAATTGGCGAGATGGAGGGTGATAGCACTTATATCTTTTTTATTGGGTGAGTGTCCTAGAAAAATGCATTTTATGGATCGAGCATCAAGTTTACTTCAATGCTGAGAATGGACCTGAACAAAGGCATTACATCCGAATATCTTGAATGGTAGATGAGACACAAGATGAGATGTAGGATATATGACAAATAGGGTTTGTAAGGGTGTTTGGAATTTTAGGATACGTGATGGCATGCGATTTATAAGATATGTAGCTGTTAGGATTGCTCCACCCCAAATTTTTTTTGGAACATTTGAAGTGAGCATAATTGATCGAGCTACAACGAGAAGATGAAAATTTTTGCTTTCGACCACACCGTTTTGTTGGGGTGTGTAGACACAAGAACTCTGGTGAACAATACCATGATTTTGAAGATATTCTCCCAGATAAGAGTTGAAGAAATCACGAGCATTGTCAGTCTTAAGATTCTGACATTGGTCGAAAATTGATTCTGGATCATTTTATGAAAGACTTTGAATGAATGACTTGTTTCGCCTTTATCTTTCATGAGAAATGTCCAACCTAGTCGAGTATGGTCATCAACAAATAGGAGGAACCAACGTGCTCCACTGACATTGTTTACTCTTGAAGGTCCCTAAATGTCTCCATGGATAAGGGAGAAAGGTTGGAAAGGTATATAAGGAGATGTTACTTGGAGAAGATACAATCTTCCACATAATTCGGCGCGGCCAATTACTTTCCTTGATCCCAAGTCTTGAAAAGTACATGAATTTGCACAGAAATTAGTTTCGCAATTCAAATACTTATTCAATCTACTCACAAATAGTAGGTTATATTCAAGTTTAGGCATAAATAAAATTGATTGAAGTAGCAAAGATTCTCATACTTGAATATTGATAACTTTAGTGGGTCTGCCATCAGTAATGCGAGCATAAATATCTCTTGTATGCAGAGTGTAAGTCGTGAACAATGTCTTATCACCTTTCATGTGATCAGAGGCTCCAAAGTCAACTATCCACTCCGTTCGGGAAACTTGTGTATGAAGAGCAAAATCTCCAAGTTTGGTAACTTGAGAAACTGACATATTGAGAAATTATGAGACAAAAATTCGTGAAATGTGAGAAGAAGTTATCACAAGAAGATTGAAATTGATTTGGAGACTGGAAATTGTAAATTGCAACAGTAAAATTTTCTTCACTGTTCACCCAGTGAATGTACTATTCATCTATTGACTTTGACTTTATTGTTCACTGTTGACTGGTTTGAGTGAACCAAGCTGAACCATATGAGATGATGGATTTGGATCGAAAATGTTGACCAGTTTGTGCATAGTTGTGATCGGTGAACTAAAGAGTGTGATCAGAGGGTTTGGCTCTTTATATGAGATTATGAGCAACCGGATTGAGATAATGGTGATTGAGTGCAGCAATGATGTTGGGTTTGGCGGTGGATTGGAGGTCTTGAGTTCGACCAATTACAATTTGTAAATATGGCTACTGATTGAATGAGAATGTAGCTCGAGAGTGCAGTGCTATGTCGGATAGGTTTCTTCGTGTCGATGAACAAGACTACGACACGAAAGAGAGACCGGGTTGGAGTTCCGGCTTGAAGCTTAAGATAACTTCAAAGCTTTGATACCATGAAGCTTTTTGTATAAGAAATTATTTTTATTTATAATGAATTGAAGGTACATTTATACATAGAGCTTTCTAACTAACTATACTATGAATAGTATAGACTAAATATAGATAACCAAATACATTGAGAGCATCTAAGGGAAAGGAGTTACAATAGAGAGAAAATAGGGAAATAAGTTCTAACAGCGTGCTTGAATTTCTACATATCGCAGTGCTCAAATTGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGAAATAATCTTGAGCAGACTATTCAAGAAATTATGGATATGGGTGGTGGCAACTGGGATAGAGAAACAGTTACTCGTGCACTTCGAGCCGCCTATAATAATCCTGAGCGGGCAGTAGATTATTTGTACTCCGTATGTTTCATCCACTTAACTATAGTATTTTCAGTTTTTTTTCCCTCTTTTCTTTGAGTAATTGTTACTGAACTTGGCTTTATATTCAGGGTATTCCAGAAACTGAAGTTGCAGCCCCTGTGGCTCGACCCCCAACTAGCCAGTCTATTGAAAACAGGTGGTGCTACTGCTCCACCTGTTTCTGGAGGTCCCAACTCATCTCCCCTGAATATGTTTCCACGGGTAAAGCTTTGTACTTGATTTTCATTTTGTCATTTTTATCCTTTTTAATTTCTCTGATTGGGGGAGGTAGTTCTTTAGGAGTCCCTTGCTGCTACCGCTGCTGATGGTGGAGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAACCCACAGATATTCTGTAATTCTTCTCGTTTTTCTATTATTATGCAGAACTGTAATTTGAAAATGCCTATGACCTTCTGATTACTCTTTCATTGGTCATTATTAAGAACATTTTGTTCAGAACATGTCAATAATCCTTGCTCCATGTCAAATTTTCTGTGAAGTGTCATGTTAATTGAAAAGATGCTCGGTCAAACTTGAACACAGCCTTCCAAACAATTAAAAGACAAAGCTTATATAAATATTTAATCTGATATGATTTGTTTAGGCTTTCACTTTATCTGTATAAATGCTGACAAACTTGATATGTTTTGTTTACCCTCCATACAAATTTTAGTTTTAAGCATTGCGGTCTATGGTGCAAGCAAATCCACAAATATTACAGGTAAATGTTGTTCTTTTTAGATTGTGCATTGTTTTAGCTAGATCTAAAGATGTGAACTTGGCCACTGTTTCAGGGTATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGGGCCTCTTGAGGGGGGCTTTGAAGGGCAAGTCTTCTCGTCCATTTGTGGCCCTTGGTTTTTGTATGCTCATTGAAATTTAAAAGTCATCTTTTTTTTTTGTTCTTTTTACATTTTCTTCCAGGGATCTATTTGATCTGCCTGAGCAAGACATGCCCCATGCAATCAATGTCACACCAGCAGAGCAGCAAGCGATCGAACGAGTTAGTAATCTTCACTTTATATACCTCCCAAGCCCCGATATCGATCAATGATCTTCTATCTATTAGTATTAACCATCTCCCTCTCTCCTACCTGCAATGTAGCTGGAAGCAACGGGGTTTGATAGAGATCAAGTAATTGAGGTATTTTTAGCTTGCGATCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGGTGGCGAGTTCGAAGATTAA

mRNA sequence

ATGCCACCTACAATAAGAGGCACCAAAGGATCCAATCTAGTATTGAGTATAAAGAAAAACATTGAAGATGTACAAGGAAAAGATAGTTATCCTTGTTGCCAACAATTGTTAATCCACAATGGGAAGGTGTTAAAGGATGAAACAACGCTGTCAGAGAACAAGGTTACTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACACAAGGCTCAACTGGGTCATCGTCTACTCAGACAACTACCGATGTACCTACAATTACTCCAACACCAAATTCTACTTCGATTCCAGAAGCTCCCACACAACCAGAAGCCTCGAGGAATGTTGCTACTTCTGATGTGCCAACTGCAAATGCTCAAATTGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGAAATAATCTTGAGCAGACTATTCAAGAAATTATGGATATGGGTGGTGGCAACTGGGATAGAGAAACAGTTACTCGTGCACTTCGAGCCGCCTATAATAATCCTGAGCGGGCAGTAGATTATTTGTACTCCTTGCAGCCCCTGTGGCTCGACCCCCAACTAGCCAGTCTATTGAAAACAGGTGGTGCTACTGCTCCACCTGTTTCTGGAGGTCCCAACTCATCTCCCCTGAATATGTTTCCACGGGAGTCCCTTGCTGCTACCGCTGCTGATGGTGGAGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAACCCACAGATATTCTCATTGCGGTCTATGGTGCAAGCAAATCCACAAATATTACAGGGTATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGGGCCTCTTGAGGGGGGCTTTGAAGGGCAAGTCTTCTCGGATCTATTTGATCTGCCTGAGCAAGACATGCCCCATGCAATCAATGTCACACCAGCAGAGCAGCAAGCGATCGAACGACTGGAAGCAACGGGGTTTGATAGAGATCAAGTAATTGAGGTATTTTTAGCTTGCGATCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGGTGGCGAGTTCGAAGATTAA

Coding sequence (CDS)

ATGCCACCTACAATAAGAGGCACCAAAGGATCCAATCTAGTATTGAGTATAAAGAAAAACATTGAAGATGTACAAGGAAAAGATAGTTATCCTTGTTGCCAACAATTGTTAATCCACAATGGGAAGGTGTTAAAGGATGAAACAACGCTGTCAGAGAACAAGGTTACTGAAGATGGTTTTCTTGTTGTTATGCTTAGTAAGAGTAAAACACAAGGCTCAACTGGGTCATCGTCTACTCAGACAACTACCGATGTACCTACAATTACTCCAACACCAAATTCTACTTCGATTCCAGAAGCTCCCACACAACCAGAAGCCTCGAGGAATGTTGCTACTTCTGATGTGCCAACTGCAAATGCTCAAATTGATACATATGGACAAGCTGCTTCAAATTTAGTTTCTGGAAATAATCTTGAGCAGACTATTCAAGAAATTATGGATATGGGTGGTGGCAACTGGGATAGAGAAACAGTTACTCGTGCACTTCGAGCCGCCTATAATAATCCTGAGCGGGCAGTAGATTATTTGTACTCCTTGCAGCCCCTGTGGCTCGACCCCCAACTAGCCAGTCTATTGAAAACAGGTGGTGCTACTGCTCCACCTGTTTCTGGAGGTCCCAACTCATCTCCCCTGAATATGTTTCCACGGGAGTCCCTTGCTGCTACCGCTGCTGATGGTGGAGGTAGCCTTGGATCTCTTGAGTTCCTTAGAAACAACCCACAGATATTCTCATTGCGGTCTATGGTGCAAGCAAATCCACAAATATTACAGGGTATGCTTCAGGAGCTTGGGAAGCAGAACCCTCAGCTTTTGAGATTAATTCAGGATCATCAAGCAGAGTTTCTCCAGTTAATAAATGGGCCTCTTGAGGGGGGCTTTGAAGGGCAAGTCTTCTCGGATCTATTTGATCTGCCTGAGCAAGACATGCCCCATGCAATCAATGTCACACCAGCAGAGCAGCAAGCGATCGAACGACTGGAAGCAACGGGGTTTGATAGAGATCAAGTAATTGAGGTATTTTTAGCTTGCGATCGCAATGAGGAATTGGCTGCCAACTATCTCTTGGAACATGGTGGCGAGTTCGAAGATTAA

Protein sequence

MPPTIRGTKGSNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLDPQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED

Homology

[Close]

BLAST of Sed0005465 vs. NCBI nr
Match: XP_008443453.1 (PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo] >XP_008443454.1 PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo])

HSP 1 Score: 576.2 bits (1484), Expect = 1.9e-160
Identity = 310/379 (81.79%), Postives = 326/379 (86.02%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLT 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENK+TEDGFLVVMLSKSK  GSTGSSSTQTTT+VPT TPTPNSTSIPEAPTQP ASRNVA
Sbjct: 61  ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTNVPTTTPTPNSTSIPEAPTQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
            SDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPER
Sbjct: 121 ISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P  +  ++ GGATAPPVSGGPNSSPLNMFP+ESLAA A 
Sbjct: 181 AVDYLYSGIPETAEVAAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESLAAAAG 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD P+QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. NCBI nr
Match: KAG7017735.1 (Ubiquitin receptor RAD23b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 574.7 bits (1480), Expect = 5.6e-160
Identity = 310/379 (81.79%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIED QG DSYPC QQLLIHNGKVLKDETTLS
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIEDAQGTDSYPCGQQLLIHNGKVLKDETTLS 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENKVTEDGFLVVMLSKSK  GSTGSSSTQTTT+VPT TPTPNST IPEAP QP ASRNVA
Sbjct: 61  ENKVTEDGFLVVMLSKSKAPGSTGSSSTQTTTNVPTTTPTPNSTLIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
           TSDVPTAN Q+DTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER
Sbjct: 121 TSDVPTANTQVDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P  +  ++TGG TAPP SGGPNSSPLNMFP+ESLAA AA
Sbjct: 181 AVDYLYSGIPEAAEIAAPVARPPSSQPIETGGVTAPPTSGGPNSSPLNMFPQESLAAAAA 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD PEQDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPEQDMPHAINVTPAEQQAIERLEALGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. NCBI nr
Match: XP_023527347.1 (ubiquitin receptor RAD23b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527348.1 ubiquitin receptor RAD23b-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527350.1 ubiquitin receptor RAD23b-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 574.7 bits (1480), Expect = 5.6e-160
Identity = 310/379 (81.79%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIED QG DSYPC QQLLIHNGKVLKDETTLS
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIEDAQGTDSYPCGQQLLIHNGKVLKDETTLS 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENKVTEDGFLVVMLSKSK  GSTGSSSTQTTT+VP  TPTPNSTSIPEAP QP ASRNVA
Sbjct: 61  ENKVTEDGFLVVMLSKSKAPGSTGSSSTQTTTNVPITTPTPNSTSIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
           TSDVPTAN Q+DTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER
Sbjct: 121 TSDVPTANTQVDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P  +  ++TGG TAPP SGGPNSSPLNMFP+ESLAA AA
Sbjct: 181 AVDYLYSGIPEAAEIAAPVARPPSSQPIETGGVTAPPTSGGPNSSPLNMFPQESLAAAAA 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD PEQDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPEQDMPHAINVTPAEQQAIERLEALGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. NCBI nr
Match: KAA0053718.1 (ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa] >TYK17740.1 ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa])

HSP 1 Score: 574.3 bits (1479), Expect = 7.3e-160
Identity = 305/357 (85.43%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 14  VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKTQGS 73
           VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+ENK+TEDGFLVVMLSKSK  GS
Sbjct: 11  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 70

Query: 74  TGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTANAQIDTYGQAASNLV 133
           TGSSSTQTTT+VPT TPTPNSTSIPEAPTQP ASRNVA SDVPTANAQIDTYGQAASNLV
Sbjct: 71  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQPAASRNVAISDVPTANAQIDTYGQAASNLV 130

Query: 134 SGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLD-------P 193
           SGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYS  P   +       P
Sbjct: 131 SGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARP 190

Query: 194 QLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIFSLR 253
             +  ++ GGATAPPVSGGPNSSPLNMFP+ESLAA A  GGGSLGSLEFLRNNPQ  +LR
Sbjct: 191 PTSQPIEAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALR 250

Query: 254 SMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFDLPE 313
           SMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQLIN PLE GFEG    DLFD P+
Sbjct: 251 SMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLE-GFEG----DLFDQPD 310

Query: 314 QDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
           QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACDRNEELAANYLLEHGGEFED
Sbjct: 311 QDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHGGEFED 362

[Close]

BLAST of Sed0005465 vs. NCBI nr
Match: XP_004147454.1 (ubiquitin receptor RAD23b [Cucumis sativus] >KGN59613.1 hypothetical protein Csa_002691 [Cucumis sativus])

HSP 1 Score: 572.4 bits (1474), Expect = 2.8e-159
Identity = 309/379 (81.53%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENK+TEDGFLVVMLSKSK  GSTGSSSTQTTT VPT TPTPNSTSIPEAP QP ASRNVA
Sbjct: 61  ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTIVPTTTPTPNSTSIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
            SDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPER
Sbjct: 121 ISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P     +  GGATAPPVSGGPNSSPLNMFP+ESLAA A 
Sbjct: 181 AVDYLYSGIPETAEVAAPVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQESLAAAAG 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD P+QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot
Match: Q84L33 (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3)

HSP 1 Score: 425.6 bits (1093), Expect = 5.5e-118
Identity = 234/360 (65.00%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 11  SNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKT 70
           S+ ++++KKNIED QGKD+YPC QQLLIHNGKVLKDET+L ENKVTE+GFLVVMLSKSK+
Sbjct: 20  SDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKS 79

Query: 71  QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTAN---AQIDTYGQ 130
            GS G +S QT++    ++ T +ST  P AP+  ++S  V  S +P      AQ DTYGQ
Sbjct: 80  GGSAGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSS-PVPASPIPAQEQPAAQTDTYGQ 139

Query: 131 AASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLDPQ 190
           AAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYS  P   +  
Sbjct: 140 AASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVA 199

Query: 191 L----ASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIF 250
           +    A +  +G A   P SGGPNSSPL++FP+E++AA    G G LG+LEFLRNN Q  
Sbjct: 200 VPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA---GSGDLGTLEFLRNNDQFQ 259

Query: 251 SLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFD 310
            LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+N P EG  +G+   D+FD
Sbjct: 260 QLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGS-DGE--GDMFD 319

Query: 311 LPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
            PEQ+MPHAINVTPAEQ+AI+RLEA GFDR  VIE FLACDRNEELAANYLLE+ G+FED
Sbjct: 320 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot
Match: Q84L32 (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2)

HSP 1 Score: 416.8 bits (1070), Expect = 2.6e-115
Identity = 236/379 (62.27%), Postives = 282/379 (74.41%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          ++++KKNIED Q KD+YPC QQLLIHNGKVLKDETTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPE----AS 120
           ENKVTE+GFLVVMLSKSKT  S G SSTQ T+   T T T +ST++    T       AS
Sbjct: 61  ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTS---TTTSTISSTTLAAPSTTQSIAVPAS 120

Query: 121 RNVATSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYN 180
            +    + PT  AQ DTYGQAAS LVSG+++EQ +Q+IM+MGGG+WD+ETVTRALRAAYN
Sbjct: 121 NSTPVQEQPT--AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYN 180

Query: 181 NPERAVDYLYSLQPLWLDPQLASLLKTGGA---TAPPVSGGPNSSPLNMFPRESLAATAA 240
           NPERAVDYLYS  P  +     +L   G     TAPP SGGPNSSPL++FP+E+++  A 
Sbjct: 181 NPERAVDYLYSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAA- 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
             GG LG+LEFLR N Q   LRSMV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL
Sbjct: 241 --GGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           +N P EG  +G V  D+FD P+Q+MPH++NVTP EQ++IERLEA GFDR  VIE FL+CD
Sbjct: 301 LNEPYEGS-DGDV--DIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEH  +FED
Sbjct: 361 RNEELAANYLLEHSADFED 368

[Close]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot
Match: Q84L30 (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2)

HSP 1 Score: 336.7 bits (862), Expect = 3.4e-91
Identity = 194/370 (52.43%), Postives = 249/370 (67.30%), Query Frame = 0


Query: 9   KGSNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKS 68
           K ++ V  +K  IE V+G + YP  +Q+LIH GKVLKDETTL EN V E+ F+V+MLSK+
Sbjct: 18  KPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKT 77

Query: 69  KT--QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTANAQIDTYG 128
           K    G++ +S+   +   P    TP  ++   +   P +    A +    A+ Q D YG
Sbjct: 78  KASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYG 137

Query: 129 QAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLD- 188
           QAASNLV+G  LE T+Q+I+DMGGG+WDR+TV RALRAA+NNPERAV+YLYS  P   + 
Sbjct: 138 QAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEI 197

Query: 189 PQLASLLKTGGATAPPV------------SGGPNSSPLNMFPRESLAATAADGGGSLGSL 248
           P +A    TG   A P+            +GGPN++PLN+FP+      AAD G   G+L
Sbjct: 198 PPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQ---GMPAADAGAGAGNL 257

Query: 249 EFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGF 308
           +FLRN+ Q  +LR+MVQANPQILQ MLQELGKQNPQL+RLIQ+HQA+FL+LIN P+EG  
Sbjct: 258 DFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG-- 317

Query: 309 EGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANY 364
           E  V   L    E  MP A+ VTP E++AIERLE  GFDR  V+EVF AC++NEELAANY
Sbjct: 318 EENVMEQL----EAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANY 377

[Close]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot
Match: Q84L31 (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 324.3 bits (830), Expect = 1.7e-87
Identity = 200/418 (47.85%), Postives = 258/418 (61.72%), Query Frame = 0


Query: 4   TIRGT------KGSNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTE 63
           T++GT      K  + V+ +KKNIE VQG D YP  +Q+LIH GKVLKDETT+ ENKV E
Sbjct: 7   TLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAE 66

Query: 64  DGFLVVMLSKSKTQGSTGSSSTQTT---------TDVPTITP-TPNSTSIPEAPT----- 123
           + F+V+M++KSK   +  SS++  T         T  P+I+P TP S S P AP      
Sbjct: 67  NSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAPAPTRPP 126

Query: 124 --------QPEASRNVATSDVP-----------------TANAQIDTYGQAASNLVSGNN 183
                    P A+    T+ +P                    +Q D YGQAASNL +G+N
Sbjct: 127 PPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSN 186

Query: 184 LEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLD-PQLASLLKTGG 243
           LE TIQ+I+DMGGG WDRETV  ALRAA+NNPERAV+YLY+  P   + P +A    + G
Sbjct: 187 LESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAG 246

Query: 244 ATAPP----------VSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIFSLR 303
             A P           + GPN++PL++FP+         G    G+L+FLRN+ Q  +LR
Sbjct: 247 QPANPPAQTQQPAAAPASGPNANPLDLFPQ---GLPNVGGNPGAGTLDFLRNSQQFQALR 306

Query: 304 SMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFE-GQVFSDLFDLP 363
           +MVQANPQ+LQ MLQELGKQNP L+RLIQDHQA+FL+LIN P+EGG E G +   +    
Sbjct: 307 AMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQM--AA 366

[Close]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot
Match: Q40742 (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 1.9e-81
Identity = 185/372 (49.73%), Postives = 241/372 (64.78%), Query Frame = 0


Query: 14  VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKTQGS 73
           V  +K+ IE  QG+  YP  QQ+LIH GKVLKD+TTL ENKV E+ FLV+ML + K   S
Sbjct: 23  VADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSS 82

Query: 74  TGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATS-DVPTANA----------QI 133
           +  ++++  ++    T T  +    +AP  P  +  V  S   PTA A          + 
Sbjct: 83  SAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVAVSSEA 142

Query: 134 DTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPL 193
           D YGQA SNLV+G+NLE TIQ I++MGGG WDR+ V  AL AA+NNPERAV+YLYS  P 
Sbjct: 143 DNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPE 202

Query: 194 WLD-------PQLASLLKTGGATAPP----VSGGPNSSPLNMFPRESLAATAADGGGSLG 253
            +D        Q A+  +   AT P     +S GPN+SPL++FP ++L   + D  G LG
Sbjct: 203 QMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPNASPLDLFP-QALPNASTDAAG-LG 262

Query: 254 SLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEG 313
           +L+ LRNN Q  +L S+VQANPQILQ +LQELGKQNPQ+L+LIQ++QAEFL LIN P EG
Sbjct: 263 NLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 322

Query: 314 GFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAA 364
             E     +L D   + MP  I VTP E +AI RLEA GFDR  V++VF AC+++E+LAA
Sbjct: 323 DDE----ENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAA 382

[Close]

BLAST of Sed0005465 vs. ExPASy TrEMBL
Match: A0A1S3B8V4 (Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103487042 PE=3 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 9.3e-161
Identity = 310/379 (81.79%), Postives = 326/379 (86.02%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLT 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENK+TEDGFLVVMLSKSK  GSTGSSSTQTTT+VPT TPTPNSTSIPEAPTQP ASRNVA
Sbjct: 61  ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTNVPTTTPTPNSTSIPEAPTQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
            SDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPER
Sbjct: 121 ISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P  +  ++ GGATAPPVSGGPNSSPLNMFP+ESLAA A 
Sbjct: 181 AVDYLYSGIPETAEVAAPVARPPTSQPIEAGGATAPPVSGGPNSSPLNMFPQESLAAAAG 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD P+QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. ExPASy TrEMBL
Match: A0A5A7UF49 (Ubiquitin receptor RAD23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1804G00110 PE=3 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 3.5e-160
Identity = 305/357 (85.43%), Postives = 318/357 (89.08%), Query Frame = 0


Query: 14  VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKTQGS 73
           VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+ENK+TEDGFLVVMLSKSK  GS
Sbjct: 11  VLGVKKNIENVQGKDSYPCGQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSKAPGS 70

Query: 74  TGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTANAQIDTYGQAASNLV 133
           TGSSSTQTTT+VPT TPTPNSTSIPEAPTQP ASRNVA SDVPTANAQIDTYGQAASNLV
Sbjct: 71  TGSSSTQTTTNVPTTTPTPNSTSIPEAPTQPAASRNVAISDVPTANAQIDTYGQAASNLV 130

Query: 134 SGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLD-------P 193
           SGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPERAVDYLYS  P   +       P
Sbjct: 131 SGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVAAPVARP 190

Query: 194 QLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIFSLR 253
             +  ++ GGATAPPVSGGPNSSPLNMFP+ESLAA A  GGGSLGSLEFLRNNPQ  +LR
Sbjct: 191 PTSQPIEAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNPQFQALR 250

Query: 254 SMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFDLPE 313
           SMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQLIN PLE GFEG    DLFD P+
Sbjct: 251 SMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLE-GFEG----DLFDQPD 310

Query: 314 QDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
           QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACDRNEELAANYLLEHGGEFED
Sbjct: 311 QDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACDRNEELAANYLLEHGGEFED 362

[Close]

BLAST of Sed0005465 vs. ExPASy TrEMBL
Match: A0A0A0LCV4 (Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G829030 PE=3 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.3e-159
Identity = 309/379 (81.53%), Postives = 322/379 (84.96%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIE+VQGKDSYPC QQLLIHNGKVLKDETTL+
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENK+TEDGFLVVMLSKSK  GSTGSSSTQTTT VPT TPTPNSTSIPEAP QP ASRNVA
Sbjct: 61  ENKITEDGFLVVMLSKSKAPGSTGSSSTQTTTIVPTTTPTPNSTSIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
            SDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGG+WDRETVTRALRAAYNNPER
Sbjct: 121 ISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P     +  GGATAPPVSGGPNSSPLNMFP+ESLAA A 
Sbjct: 181 AVDYLYSGIPETAEVAAPVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQESLAAAAG 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD P+QDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPDQDMPHAINVTPAEQQAIERLEAMGFDRDQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. ExPASy TrEMBL
Match: A0A6J1J0D2 (Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482316 PE=3 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 2.5e-158
Identity = 306/379 (80.74%), Postives = 321/379 (84.70%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIED QG DSYPC QQLLIHNGKVLKD+TTLS
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIEDAQGTDSYPCGQQLLIHNGKVLKDDTTLS 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENKVTEDGFLVVMLSKSK  GS+GSSSTQTTT+VPT  PTPNST IPEAP QP ASRNVA
Sbjct: 61  ENKVTEDGFLVVMLSKSKAPGSSGSSSTQTTTNVPTTIPTPNSTLIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
           TSDVPTAN Q+DTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER
Sbjct: 121 TSDVPTANTQVDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAA 240
           AVDYLYS  P   +       P  +  ++TGG TAPP SGGPNSSPLNMFP+ESLAA AA
Sbjct: 181 AVDYLYSGIPEAAEIAAPVARPPSSQPIETGGVTAPPTSGGPNSSPLNMFPQESLAAAAA 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
            GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFLQL
Sbjct: 241 GGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           IN PLE GFEG    DLFD PEQDMPHAINVTPAEQQAIERLEA GFDR+QVIE FLACD
Sbjct: 301 INEPLE-GFEG----DLFDQPEQDMPHAINVTPAEQQAIERLEALGFDREQVIEAFLACD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEHGGEFED
Sbjct: 361 RNEELAANYLLEHGGEFED 374

[Close]

BLAST of Sed0005465 vs. ExPASy TrEMBL
Match: A0A6J1F959 (Ubiquitin receptor RAD23 OS=Cucurbita moschata OX=3662 GN=LOC111441956 PE=3 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 1.1e-156
Identity = 309/381 (81.10%), Postives = 321/381 (84.25%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          VL +KKNIED QG DSYPC QQLLIHNGKVLKDETTLS
Sbjct: 1   MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIEDAQGTDSYPCGQQLLIHNGKVLKDETTLS 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVA 120
           ENKVTEDGFLVVMLSKSK  GSTGSSSTQTTT+VPT TPTPNST IPEAP QP ASRNVA
Sbjct: 61  ENKVTEDGFLVVMLSKSKAPGSTGSSSTQTTTNVPTTTPTPNSTLIPEAPAQPAASRNVA 120

Query: 121 TSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180
           TSDVPTAN Q+DTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER
Sbjct: 121 TSDVPTANTQVDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPER 180

Query: 181 AVDYLYSLQPLWLD-------PQLASLLKTGGATAPPVSGGPNSSPLNMFPRESL--AAT 240
           AVDYLYS  P   +       P  +  ++TGG TA P SGGPNSSPLNMFP+ESL  AA 
Sbjct: 181 AVDYLYSGIPEAAEIAAPVARPPSSQPIETGGVTA-PTSGGPNSSPLNMFPQESLAAAAA 240

Query: 241 AADGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFL 300
           AA GGGSLGSLEFLRNNPQ  +LRSMVQANPQILQ MLQELGKQNPQLLRLIQDHQAEFL
Sbjct: 241 AAGGGGSLGSLEFLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFL 300

Query: 301 QLINGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLA 360
           QLIN PLE GFEG    DLFD PEQDMPHAINVTPAEQQAIERLEA GFDRDQVIE FLA
Sbjct: 301 QLINEPLE-GFEG----DLFDQPEQDMPHAINVTPAEQQAIERLEALGFDRDQVIEAFLA 360

Query: 361 CDRNEELAANYLLEHGGEFED 364
           CDRNEELAANYLLEHGGEFED
Sbjct: 361 CDRNEELAANYLLEHGGEFED 375

[Close]

BLAST of Sed0005465 vs. TAIR 10
Match: AT1G79650.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 425.6 bits (1093), Expect = 3.9e-119
Identity = 234/360 (65.00%), Postives = 283/360 (78.61%), Query Frame = 0


Query: 11  SNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKT 70
           S+ ++++KKNIED QGKD+YPC QQLLIHNGKVLKDET+L ENKVTE+GFLVVMLSKSK+
Sbjct: 20  SDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKS 79

Query: 71  QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTAN---AQIDTYGQ 130
            GS G +S QT++    ++ T +ST  P AP+  ++S  V  S +P      AQ DTYGQ
Sbjct: 80  GGSAGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSS-PVPASPIPAQEQPAAQTDTYGQ 139

Query: 131 AASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLDPQ 190
           AAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYS  P   +  
Sbjct: 140 AASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVA 199

Query: 191 L----ASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIF 250
           +    A +  +G A   P SGGPNSSPL++FP+E++AA    G G LG+LEFLRNN Q  
Sbjct: 200 VPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA---GSGDLGTLEFLRNNDQFQ 259

Query: 251 SLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFD 310
            LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+N P EG  +G+   D+FD
Sbjct: 260 QLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGS-DGE--GDMFD 319

Query: 311 LPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
            PEQ+MPHAINVTPAEQ+AI+RLEA GFDR  VIE FLACDRNEELAANYLLE+ G+FED
Sbjct: 320 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of Sed0005465 vs. TAIR 10
Match: AT1G79650.2 (Rad23 UV excision repair protein family )

HSP 1 Score: 420.6 bits (1080), Expect = 1.3e-117
Identity = 233/360 (64.72%), Postives = 280/360 (77.78%), Query Frame = 0


Query: 11  SNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKT 70
           S+ ++++KKNIED QGKD+YPC QQLLIHNGKVLKDET+L ENKVTE+GFLVVMLSKSK+
Sbjct: 20  SDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKS 79

Query: 71  QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTAN---AQIDTYGQ 130
            GS G +S Q       ++ T +ST  P AP+  ++S  V  S +P      AQ DTYGQ
Sbjct: 80  GGSAGQASVQ------PVSATTSSTK-PAAPSTTQSS-PVPASPIPAQEQPAAQTDTYGQ 139

Query: 131 AASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLDPQ 190
           AAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYS  P   +  
Sbjct: 140 AASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVA 199

Query: 191 L----ASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIF 250
           +    A +  +G A   P SGGPNSSPL++FP+E++AA    G G LG+LEFLRNN Q  
Sbjct: 200 VPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA---GSGDLGTLEFLRNNDQFQ 259

Query: 251 SLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFD 310
            LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL+N P EG  +G+   D+FD
Sbjct: 260 QLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGS-DGE--GDMFD 319

Query: 311 LPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
            PEQ+MPHAINVTPAEQ+AI+RLEA GFDR  VIE FLACDRNEELAANYLLE+ G+FED
Sbjct: 320 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 365

[Close]

BLAST of Sed0005465 vs. TAIR 10
Match: AT1G16190.1 (Rad23 UV excision repair protein family )

HSP 1 Score: 416.8 bits (1070), Expect = 1.8e-116
Identity = 236/379 (62.27%), Postives = 282/379 (74.41%), Query Frame = 0


Query: 1   MPPTIRGTKGSNL---------VLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLS 60
           M  T++  KGS+          ++++KKNIED Q KD+YPC QQLLIHNGKVLKDETTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENKVTEDGFLVVMLSKSKTQGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPE----AS 120
           ENKVTE+GFLVVMLSKSKT  S G SSTQ T+   T T T +ST++    T       AS
Sbjct: 61  ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTS---TTTSTISSTTLAAPSTTQSIAVPAS 120

Query: 121 RNVATSDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYN 180
            +    + PT  AQ DTYGQAAS LVSG+++EQ +Q+IM+MGGG+WD+ETVTRALRAAYN
Sbjct: 121 NSTPVQEQPT--AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYN 180

Query: 181 NPERAVDYLYSLQPLWLDPQLASLLKTGGA---TAPPVSGGPNSSPLNMFPRESLAATAA 240
           NPERAVDYLYS  P  +     +L   G     TAPP SGGPNSSPL++FP+E+++  A 
Sbjct: 181 NPERAVDYLYSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAA- 240

Query: 241 DGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQL 300
             GG LG+LEFLR N Q   LRSMV +NPQILQ MLQELGKQNPQLLRLIQ++QAEFLQL
Sbjct: 241 --GGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQL 300

Query: 301 INGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACD 360
           +N P EG  +G V  D+FD P+Q+MPH++NVTP EQ++IERLEA GFDR  VIE FL+CD
Sbjct: 301 LNEPYEGS-DGDV--DIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCD 360

Query: 361 RNEELAANYLLEHGGEFED 364
           RNEELAANYLLEH  +FED
Sbjct: 361 RNEELAANYLLEHSADFED 368

[Close]

BLAST of Sed0005465 vs. TAIR 10
Match: AT1G79650.4 (Rad23 UV excision repair protein family )

HSP 1 Score: 416.4 bits (1069), Expect = 2.4e-116
Identity = 234/384 (60.94%), Postives = 284/384 (73.96%), Query Frame = 0


Query: 11  SNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKT 70
           S+ ++++KKNIED QGKD+YPC QQLLIHNGKVLKDET+L ENKVTE+GFLVVMLSKSK+
Sbjct: 20  SDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKS 79

Query: 71  QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVP-------------- 130
            GS G +S QT++    ++ T +ST  P AP+  ++S  V  S +P              
Sbjct: 80  GGSAGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSS-PVPASPIPAQEQPAVYAFVFSF 139

Query: 131 -------------TANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALR 190
                         + AQ DTYGQAAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALR
Sbjct: 140 AGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALR 199

Query: 191 AAYNNPERAVDYLYSLQPLWLDPQL----ASLLKTGGATAPPVSGGPNSSPLNMFPRESL 250
           AAYNNPERAVDYLYS  P   +  +    A +  +G A   P SGGPNSSPL++FP+E++
Sbjct: 200 AAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETV 259

Query: 251 AATAADGGGSLGSLEFLRNNPQIFSLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQA 310
           AA    G G LG+LEFLRNN Q   LR+MV +NPQILQ MLQELGKQNPQLLRLIQ++QA
Sbjct: 260 AAA---GSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQA 319

Query: 311 EFLQLINGPLEGGFEGQVFSDLFDLPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEV 364
           EFLQL+N P EG  +G+   D+FD PEQ+MPHAINVTPAEQ+AI+RLEA GFDR  VIE 
Sbjct: 320 EFLQLVNEPYEGS-DGE--GDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEA 379

[Close]

BLAST of Sed0005465 vs. TAIR 10
Match: AT1G79650.3 (Rad23 UV excision repair protein family )

HSP 1 Score: 391.0 bits (1003), Expect = 1.1e-108
Identity = 221/360 (61.39%), Postives = 268/360 (74.44%), Query Frame = 0


Query: 11  SNLVLSIKKNIEDVQGKDSYPCCQQLLIHNGKVLKDETTLSENKVTEDGFLVVMLSKSKT 70
           S+ ++++KKNIED QGKD+YPC QQLLIHNGKVLKDET+L ENKVTE+GFLVVMLSKSK+
Sbjct: 20  SDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSKS 79

Query: 71  QGSTGSSSTQTTTDVPTITPTPNSTSIPEAPTQPEASRNVATSDVPTAN---AQIDTYGQ 130
            GS G +S QT++    ++ T +ST  P AP+  ++S  V  S +P      AQ DTYGQ
Sbjct: 80  GGSAGQASVQTSSVSQPVSATTSSTK-PAAPSTTQSS-PVPASPIPAQEQPAAQTDTYGQ 139

Query: 131 AASNLVSGNNLEQTIQEIMDMGGGNWDRETVTRALRAAYNNPERAVDYLYSLQPLWLDPQ 190
           AAS LVSG++LEQ +Q+IM+MGGG+WD+ETVTRALRAAYNNPERAVDYLYS  P   +  
Sbjct: 140 AASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVA 199

Query: 191 L----ASLLKTGGATAPPVSGGPNSSPLNMFPRESLAATAADGGGSLGSLEFLRNNPQIF 250
           +    A +  +G A   P SGGPNSSPL++FP+E++AA    G G LG+LEFLRNN    
Sbjct: 200 VPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAA---GSGDLGTLEFLRNND--- 259

Query: 251 SLRSMVQANPQILQGMLQELGKQNPQLLRLIQDHQAEFLQLINGPLEGGFEGQVFSDLFD 310
                            QELGKQNPQLLRLIQ++QAEFLQL+N P EG  +G+   D+FD
Sbjct: 260 -----------------QELGKQNPQLLRLIQENQAEFLQLVNEPYEGS-DGE--GDMFD 319

Query: 311 LPEQDMPHAINVTPAEQQAIERLEATGFDRDQVIEVFLACDRNEELAANYLLEHGGEFED 364
            PEQ+MPHAINVTPAEQ+AI+RLEA GFDR  VIE FLACDRNEELAANYLLE+ G+FED
Sbjct: 320 QPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 351

The following BLAST results are available for this feature:

BLAST of Sed0005465 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443453.1	1.9e-160	81.79	PREDICTED: ubiquitin receptor RAD23b-like [Cucumis melo] >XP_008443454.1 PREDICT...	[more]
KAG7017735.1	5.6e-160	81.79	Ubiquitin receptor RAD23b [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023527347.1	5.6e-160	81.79	ubiquitin receptor RAD23b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_02352...	[more]
KAA0053718.1	7.3e-160	85.43	ubiquitin receptor RAD23b-like [Cucumis melo var. makuwa] >TYK17740.1 ubiquitin ...	[more]
XP_004147454.1	2.8e-159	81.53	ubiquitin receptor RAD23b [Cucumis sativus] >KGN59613.1 hypothetical protein Csa...	[more]

BLAST of Sed0005465 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84L33	5.5e-118	65.00	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3	[more]
Q84L32	2.6e-115	62.27	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=...	[more]
Q84L30	3.4e-91	52.43	Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2	[more]
Q84L31	1.7e-87	47.85	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
Q40742	1.9e-81	49.73	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RA...	[more]

BLAST of Sed0005465 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8V4	9.3e-161	81.79	Ubiquitin receptor RAD23 OS=Cucumis melo OX=3656 GN=LOC103487042 PE=3 SV=1	[more]
A0A5A7UF49	3.5e-160	85.43	Ubiquitin receptor RAD23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LCV4	1.3e-159	81.53	Ubiquitin receptor RAD23 OS=Cucumis sativus OX=3659 GN=Csa_3G829030 PE=3 SV=1	[more]
A0A6J1J0D2	2.5e-158	80.74	Ubiquitin receptor RAD23 OS=Cucurbita maxima OX=3661 GN=LOC111482316 PE=3 SV=1	[more]
A0A6J1F959	1.1e-156	81.10	Ubiquitin receptor RAD23 OS=Cucurbita moschata OX=3662 GN=LOC111441956 PE=3 SV=1	[more]

BLAST of Sed0005465 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79650.1	3.9e-119	65.00	Rad23 UV excision repair protein family	[more]
AT1G79650.2	1.3e-117	64.72	Rad23 UV excision repair protein family	[more]
AT1G16190.1	1.8e-116	62.27	Rad23 UV excision repair protein family	[more]
AT1G79650.4	2.4e-116	60.94	Rad23 UV excision repair protein family	[more]
AT1G79650.3	1.1e-108	61.39	Rad23 UV excision repair protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 260..280
None	No IPR available	GENE3D	1.10.8.10		coord: 310..357 e-value: 2.2E-22 score: 80.7
None	No IPR available	GENE3D	1.10.8.10		coord: 131..181 e-value: 2.2E-19 score: 71.0
None	No IPR available	GENE3D	3.10.20.90		coord: 6..71 e-value: 1.3E-15 score: 58.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..108
None	No IPR available	PANTHER	PTHR10621:SF32	UBIQUITIN RECEPTOR RAD23A-RELATED	coord: 13..362
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 13..362
None	No IPR available	CDD	cd01805	Ubl_Rad23	coord: 11..65 e-value: 2.01336E-18 score: 76.827
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 330..344 score: 55.76 coord: 313..329 score: 59.36 coord: 259..281 score: 63.04 coord: 345..360 score: 61.93
IPR004806	UV excision repair protein Rad23	TIGRFAM	TIGR00601	TIGR00601	coord: 11..362 e-value: 1.0E-104 score: 348.8
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 319..356 e-value: 1.2E-5 score: 34.7 coord: 138..178 e-value: 1.7E-5 score: 34.3
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 319..354 e-value: 6.0E-9 score: 35.6 coord: 138..176 e-value: 8.3E-15 score: 54.3
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 136..179 score: 12.137243
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 317..357 score: 14.089108
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..66 e-value: 1.7E-5 score: 34.3
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 11..67 e-value: 4.5E-10 score: 39.1
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 11..70 score: 11.855915
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 231..274 e-value: 8.4E-8 score: 41.9
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 233..288 e-value: 2.6E-21 score: 75.1
IPR036353	XPC-binding domain superfamily	GENE3D	1.10.10.540		coord: 221..288 e-value: 1.3E-24 score: 87.5
IPR036353	XPC-binding domain superfamily	SUPERFAMILY	101238	XPC-binding domain	coord: 230..293
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 134..178
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 305..359
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 11..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005465.1	Sed0005465.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding
molecular_function	GO:0070628	proteasome binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding