Sed0005443 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGGAATTGGATTCCAAACCAGCCAACCAAACGAAATATGGTTGAATTTTCAAAAAATGAATTTCATAGGATTTGGTTGGGTGGAATCTCTACTGCAAACCAAATTCCACAAAAGTTGTACGGAGAGGAGTGATGATTCAAGCATCAGTTGGCTTGAATCTCGATAGTGAGAGAAGCAAGACGGAAGCCATGGAAGAAGAAGCAGCACCTTCACTGCCCGACCTAATTCAGTCGCTGGATCAAGCATCGTTCATGGCGAAGCAGCTTCCATCTACATCCAACCCGACCCATCTCCTTCAAATCTACAGTTCCCTCCGCCAAGCCAACCTCCGCCTCTCCCTCTTCCTCTCCCCAACTCACTTCCCCCAATCTCACCCCACTTCCGCAACCACCGCCGACGGCGACGACCCGATGCAGCTCGCCGACGCCGAAGACACTTCCCATGGCGCGATTCAATTGGTGGAGGAGAAGATGAAGGATTGCTTTATCAAGAACAAGCGGCTCAAGCGTCAACTCTCGCCATCCGCCGCGGCCGTGGCGGAGGAAAGGCGGCTGCATCCTGATGATCGGTTTGTTGCTGCGACGCCCAAGGTTTTCGATCCTCGTGCTGAGAGATTGCGGGCGTTGGACCTTATTTCTCAGTTCCATGCGTGAGGCTAAATTGAAACATCGAGCACTGTGGTGAGATTCTGTACATTACAATTATAATTTTGTGTTATTGCCATTGCTAATGCTATTATCTAATTTGTCGAAGATGCTTAGCACGTTCTGTACATACGTTTCTGAAGTTATTCTTCGGCTTATCGAATTTAAAACTCAGTGTGGATGTTTTTTGATAAGATCCTTCCAAAATTTACTAGGATGCAAAGCAAGTCGCATACTTTCGTGGTCGGGTGGGGTTAAAGGCACTTAATAGATATCATTTTAAAATAATAATAATAATAATTCGACAATAACTGGGGGTAGAAGATTCGAACCCGTAACCTCTGGATTTTTTTATCCAATATTTATGGGGATGGAATGAAAACATACTTCTTTCCTTCTAGGAGGATAAGTGAGTGGGGTAGACCTCTCTGGATTTGTGTTTCCTTGTGTTGTTGTTTCCTTTGAAAGGTCTCTCCCCTTTTCTCTTTGCTTTGGTTGTTGGTTATTCAATCAAGAAATGACAGACATCTTGGCTCTCACTCTCTTATCTTTAGTTGTGGAGTTTGTTCTTGAATAAAAAAGAAGGGATATTCGTTCTTGGAGTCCTAATCCGATTGAGTGTTTTTCTTGCTGCTTGTTTTTTCGATGTTTGTTGAATCAATGCTTGGTTGGTGAGTCTATGTTTTTCTGTCTCTTTGAAAGGTGAAAATTCAATTCTTCATTTGACAGGTTATCCGTGGCAGATTAACACTTTAGATGAGCTTTTGATTATGATGTCTACTTTGGTTGGCTTGTTTTGTTGCATTCTCTGCCGAAAGGCCAAGGAGAGCTTGTCATATTCTCTGCAATTGCAACTTTGGTCTGACTGTCTGGAGCCATTTTTTAGGTGTTTGGCTTTCAGTTTGCTAGAGACATGGCGGTTTTAGGGGATGAATGGGGAGTTTCATCTCCATCCTCCTTTCCTTGAGAAGGTGAAAGTGTGCTCTGTAATGTGGGGTGAAATGAATAATAGGATCTTTATAGAGGACCTCAGTGATGTTTGGTCTTTGGTTAGGTTCTATGTTTCTCTCTAGGCGCTGACCAAAAAGCTGTGTTGTAATTATTCCTTTGATCATTTTATTTGATTGGAGCCTCTTTCTTGAGTTGAGCTTCCTTTTATGGGCTTGGTTTTTTCCATGTCCCAGTATTCTTTCATTTTTTTTTATTTGTTGAAATTTTGGTTGTTTATCTAAAAATTATTTGAACAAAAATCACATATGCCCTTCTATGTATGTGACTTGAGTGCTGTTTGTATAAGTTTTTTCTATTGGTCTTGATTTTGTTTAGCAGATTCTATGTTAT GGGGAATTGGATTCCAAACCAGCCAACCAAACGAAATATGGTTGAATTTTCAAAAAATGAATTTCATAGGATTTGGTTGGGTGGAATCTCTACTGCAAACCAAATTCCACAAAAGTTGTACGGAGAGGAGTGATGATTCAAGCATCAGTTGGCTTGAATCTCGATAGTGAGAGAAGCAAGACGGAAGCCATGGAAGAAGAAGCAGCACCTTCACTGCCCGACCTAATTCAGTCGCTGGATCAAGCATCGTTCATGGCGAAGCAGCTTCCATCTACATCCAACCCGACCCATCTCCTTCAAATCTACAGTTCCCTCCGCCAAGCCAACCTCCGCCTCTCCCTCTTCCTCTCCCCAACTCACTTCCCCCAATCTCACCCCACTTCCGCAACCACCGCCGACGGCGACGACCCGATGCAGCTCGCCGACGCCGAAGACACTTCCCATGGCGCGATTCAATTGGTGGAGGAGAAGATGAAGGATTGCTTTATCAAGAACAAGCGGCTCAAGCGTCAACTCTCGCCATCCGCCGCGGCCGTGGCGGAGGAAAGGCGGCTGCATCCTGATGATCGGTTTGTTGCTGCGACGCCCAAGGTTTTCGATCCTCGTGCTGAGAGATTGCGGGCGTTGGACCTTATTTCTCAGTTCCATGCGTGAGGCTAAATTGAAACATCGAGCACTGTGGTTATCCGTGGCAGATTAACACTTTAGATGAGCTTTTGATTATGATGTCTACTTTGGTTGGCTTGTTTTGTTGCATTCTCTGCCGAAAGGCCAAGGAGAGCTTGTCATATTCTCTGCAATTGCAACTTTGGTCTGACTGTCTGGAGCCATTTTTTAGGTGTTTGGCTTTCAGTTTGCTAGAGACATGGCGGTTTTAGGGGATGAATGGGGAGTTTCATCTCCATCCTCCTTTCCTTGAGAAGGTGAAAGTGTGCTCTGTAATGTGGGGTGAAATGAATAATAGGATCTTTATAGAGGACCTCAGTGATGTTTGGTCTTTGGTTAGGTTCTATGTTTCTCTCTAGGCGCTGACCAAAAAGCTGTGTTGTAATTATTCCTTTGATCATTTTATTTGATTGGAGCCTCTTTCTTGAGTTGAGCTTCCTTTTATGGGCTTGGTTTTTTCCATGTCCCAGTATTCTTTCATTTTTTTTTATTTGTTGAAATTTTGGTTGTTTATCTAAAAATTATTTGAACAAAAATCACATATGCCCTTCTATGTATGTGACTTGAGTGCTGTTTGTATAAGTTTTTTCTATTGGTCTTGATTTTGTTTAGCAGATTCTATGTTAT ATGATTCAAGCATCAGTTGGCTTGAATCTCGATAGTGAGAGAAGCAAGACGGAAGCCATGGAAGAAGAAGCAGCACCTTCACTGCCCGACCTAATTCAGTCGCTGGATCAAGCATCGTTCATGGCGAAGCAGCTTCCATCTACATCCAACCCGACCCATCTCCTTCAAATCTACAGTTCCCTCCGCCAAGCCAACCTCCGCCTCTCCCTCTTCCTCTCCCCAACTCACTTCCCCCAATCTCACCCCACTTCCGCAACCACCGCCGACGGCGACGACCCGATGCAGCTCGCCGACGCCGAAGACACTTCCCATGGCGCGATTCAATTGGTGGAGGAGAAGATGAAGGATTGCTTTATCAAGAACAAGCGGCTCAAGCGTCAACTCTCGCCATCCGCCGCGGCCGTGGCGGAGGAAAGGCGGCTGCATCCTGATGATCGGTTTGTTGCTGCGACGCCCAAGGTTTTCGATCCTCGTGCTGAGAGATTGCGGGCGTTGGACCTTATTTCTCAGTTCCATGCGTGA MIQASVGLNLDSERSKTEAMEEEAAPSLPDLIQSLDQASFMAKQLPSTSNPTHLLQIYSSLRQANLRLSLFLSPTHFPQSHPTSATTADGDDPMQLADAEDTSHGAIQLVEEKMKDCFIKNKRLKRQLSPSAAAVAEERRLHPDDRFVAATPKVFDPRAERLRALDLISQFHA Homology
BLAST of Sed0005443 vs. NCBI nr
Match: XP_022156139.1 (uncharacterized protein LOC111023095 [Momordica charantia] >XP_022156140.1 uncharacterized protein LOC111023095 [Momordica charantia]) HSP 1 Score: 211.5 bits (537), Expect = 5.9e-51 Identity = 119/171 (69.59%), Postives = 135/171 (78.95%), Query Frame = 0
BLAST of Sed0005443 vs. NCBI nr
Match: XP_038876419.1 (uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876420.1 uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876421.1 uncharacterized protein LOC120068853 [Benincasa hispida] >XP_038876422.1 uncharacterized protein LOC120068853 [Benincasa hispida]) HSP 1 Score: 204.5 bits (519), Expect = 7.3e-49 Identity = 120/176 (68.18%), Postives = 135/176 (76.70%), Query Frame = 0
BLAST of Sed0005443 vs. NCBI nr
Match: XP_008460165.1 (PREDICTED: uncharacterized protein LOC103499058 [Cucumis melo] >KAA0040030.1 uncharacterized protein E6C27_scaffold122G003160 [Cucumis melo var. makuwa] >TYK24471.1 putative AP2-like ethylene-responsive transcription factor SNZ [Cucumis melo var. makuwa]) HSP 1 Score: 202.6 bits (514), Expect = 2.8e-48 Identity = 115/168 (68.45%), Postives = 127/168 (75.60%), Query Frame = 0
BLAST of Sed0005443 vs. NCBI nr
Match: XP_011656677.1 (uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743326.1 uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743327.1 uncharacterized protein LOC105435764 [Cucumis sativus] >XP_031743328.1 uncharacterized protein LOC105435764 [Cucumis sativus] >KGN46204.1 hypothetical protein Csa_005182 [Cucumis sativus]) HSP 1 Score: 199.9 bits (507), Expect = 1.8e-47 Identity = 117/176 (66.48%), Postives = 130/176 (73.86%), Query Frame = 0
BLAST of Sed0005443 vs. NCBI nr
Match: KAG6574778.1 (hypothetical protein SDJN03_25417, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013358.1 hypothetical protein SDJN02_23522, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 196.8 bits (499), Expect = 1.5e-46 Identity = 114/173 (65.90%), Postives = 132/173 (76.30%), Query Frame = 0
BLAST of Sed0005443 vs. ExPASy TrEMBL
Match: A0A6J1DSG3 (uncharacterized protein LOC111023095 OS=Momordica charantia OX=3673 GN=LOC111023095 PE=4 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 2.9e-51 Identity = 119/171 (69.59%), Postives = 135/171 (78.95%), Query Frame = 0
BLAST of Sed0005443 vs. ExPASy TrEMBL
Match: A0A5D3DLF5 (Putative AP2-like ethylene-responsive transcription factor SNZ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00120 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48 Identity = 115/168 (68.45%), Postives = 127/168 (75.60%), Query Frame = 0
BLAST of Sed0005443 vs. ExPASy TrEMBL
Match: A0A1S3CC06 (uncharacterized protein LOC103499058 OS=Cucumis melo OX=3656 GN=LOC103499058 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48 Identity = 115/168 (68.45%), Postives = 127/168 (75.60%), Query Frame = 0
BLAST of Sed0005443 vs. ExPASy TrEMBL
Match: A0A0A0KBH1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074570 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 8.7e-48 Identity = 117/176 (66.48%), Postives = 130/176 (73.86%), Query Frame = 0
BLAST of Sed0005443 vs. ExPASy TrEMBL
Match: A0A7J6GXD4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_006734 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36 Identity = 93/161 (57.76%), Postives = 114/161 (70.81%), Query Frame = 0
BLAST of Sed0005443 vs. TAIR 10
Match: AT1G01840.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 98.6 bits (244), Expect = 5.2e-21 Identity = 71/155 (45.81%), Postives = 95/155 (61.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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