Sed0005406 (gene) Chayote v1

Overview


Name	Sed0005406
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 18453569 .. 18456305 (+)
RNA-Seq Expression	Sed0005406
Synteny	Sed0005406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCGTTTGGATTTGACCTTACGGTATATTCTGCTCCGAACAAATTATACTGTATAACTTTGTGTATGTTGAACAATTTACACTGACCTGATTTTGTTGTATGTTTCATACCATCTGTAAAGGAGGTGGAGGAAGGAAATAGAAAGGTAGGTGATGCAGTATGTTCTGCGAAGGACGTACTAGAAGGCTACGACAACATAGGTAGTGGTGGAAACAATCTTCCACTAGATGATGGCCCCATTGGTGGGGAAAAAAGGAGTCATTGATCATAAATCAAGCGATGAGGTATTGTTAATATGGTTATTGGTTGATATGTTTATGAGGTATTGCAAAGATGTGGTTATGTATATATGTTTATACGGTGTGTTGGTTGATGAATAGGCGTTTTTCTTTATGTTGTAGGAAGAAGACATACCAATATCAACACGTTTGAAAATTTTGGATAAGGGAAGAAAATGTCAACAAGAAGTCATGAAGAAGAGAACGAAGGTTTGTGTGGAACCTACAGTAGTGTCCCCATGTTTAAACGATACGTTAGAGGGCATGCTTGCATCAAATGAGAGCCCAGCTGTTCATAAAGTATGTATTCCATGATTTAATATTATCTTTGTAGGTCCATTCTGACGCACAAAACTTTATAATTTTTATGTAGACTAAGAAGAAGGCATTGACTACAGAAGAGAAAGGGAAGAGGAAGATTGTGGAGGATGAGGTGGGTACCATGTAAGTTGTATTGTATACATTTCCTAATATATTGGTACAAAAAATTTGTGCATTTGTATTGTAGGATGGTAGTTCAATGCGGACGAAAGAGAAACAAAAAATACAGGAAGACCCATCCGGATTGAAACGACCTAGCACTAGGGTATATTTATCATACAGTGCGTACCGTATGTTATCTCTTGAATAAATGTCTTTGTTGTAATGTAGTATGTTTAAAACTAAAATACAGAAAAGTGAAGGAGGACAAAGTTCGAAAAAGGTTAACAGGACGGATGAAAAGAAAAGATGAGACAAGATCATCAAACCAAAGGAAGTTGTATCAAAGGTATAGAATAATACAAACTGTGTTGAACGTACTGAACTTTCACTTTATGTGTACGGTCTTAATACTACTGTATTACACAGGTTCTCATTTTCTATTGCCATATAAAGATTGGAACCTCAAACAAAAAATAAATATATTTGGTACGCATGATACGATTAAGCAAATAAATTACAAACTAACCAAAGAACAACGGGACGAGTTCAAGGAAGGGATTTTTGGAAAGTTCTTCGATTTAGACATAATGAGGTTCCAATCTCAACTACTCTACTCACTAATGAGGAGAATGTGCAAGTCAGAAAAATAGGATGAATTATGGTTTAATCTTGGAGGTATAGTAGTTAAATTTAGAATAGATGATTTCGAGAAAATTACTAGGTTAAACTGTGGGAAGAAAGTAGAGGTCGATGATAGGAAATTAAAGGGTAGGTTCATGAGGATGTACTTCCTAAACAAAAGGACAATTACTAGGACAGACCTTACAGACCTGTTTAAGAATGCAACGACTATCAAACCTAAACATGTGGTTCGCTTGGCCAAGTTGTACTGTTTCGAATGTTTTGTGGATGCAAAACACTTCAAACAAAACGTGGACAATGAACATATGTTACTTTTAGAAGATGGTGATCAATTCAATGCATACCATTGGGGTAGGTTAGCTTTTAAGACGACCTTAAAATTTGTAAAGAGTGGTATACTACACCCTCAGTCCAGTACAATTGGTATTGGAGGATTCCCTTATGCCTTTCTAATTTGGGCGTATGAATGCATTCCATTAATATCACATGGAAGCAATATGTTCGCACGTCGCAAGGGAAATTCAATACCAATGATGTTAAATTGAGAACAAAAGGGTATGTTATTTACTTCAAACTAATTAAATATTGATTACTGATGCATATAGTTCAAGTTTATATAATGGTGATATGGATTTTGTTCTTGGGAACAGTTCAAGTTTATAATGCTGGGAAATTGTGAGGAGATTTATAGGAACAATGTGGTTGAAGACGAATCGAAGAACGGTGTTGATGTAGAATATGTAAGTATTGTCTTTTCATCTTCTATGTTCTATTTATCATACCGTTTGTTATTATGCGATATGTATGTGCTAAACAGAGTTGAATCCGTAGGGTATGTTCTATACTGTCTGGTGATGCAAACCTTTTTGTAATGTATGATATTAACTGTTTGTAGTATACTACACTGATTCGTGTTTCAATCCATTCTGTAGGATAAAGAAGTTGACGGGGGAGAATCCTCAGATTTTGACAAATGGTTTGACGATATGGTAGACGAAGCTTATGAAGAGATAAAAAAAAATGGAACAAACAACAAAAGCTGCCAATACAACGATAGTAGATTGTGTGGGGCCTGAAGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTTGAAGGACAATCCAAGTATTAACGAAACCTACACCAACACAACTAAACTTATGGAGTATTTGAAATCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGATGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGTGAAAAGTAATGTTGTTGAAGATTTAGGGGATAAGCTTAACATCGAAGATGAAGATGATGATGGGGGGATGGTGTAA

mRNA sequence

ATGGTTCCGTTTGGATTTGACCTTACGGAGGTGGAGGAAGGAAATAGAAAGGTAGGTGATGCAGTATGTTCTGCGAAGGACGTACTAGAAGGCTACGACAACATAGGTAGTGGTGGAAACAATCTTCCACTAGATGATGGCCCCATTGAAGACATACCAATATCAACACGTTTGAAAATTTTGGATAAGGGAAGAAAATGTCAACAAGAAGTCATGAAGAAGAGAACGAAGGTTTGTGTGGAACCTACAGTAGTGTCCCCATGTTTAAACGATACGTTAGAGGGCATGCTTGCATCAAATGAGAGCCCAGCTGTTCATAAAACTAAGAAGAAGGCATTGACTACAGAAGAGAAAGGGAAGAGGAAGATTGTGGAGGATGAGGATGGTAGTTCAATGCGGACGAAAGAGAAACAAAAAATACAGGAAGACCCATCCGGATTGAAACGACCTAGCACTAGGTTCAAGTTTATAATGCTGGGAAATTGTGAGGAGATTTATAGGAACAATGTGGTTGAAGACGAATCGAAGAACGGTGTTGATGTAGAATATGATAAAGAAGTTGACGGGGGAGAATCCTCAGATTTTGACAAATGGTTTGACGATATGGTAGACGAAGCTTATGAAGAGATAAAAAAAAATGGAACAAACAACAAAAGCTGCCAATACAACGATATAGATTGTGTGGGGCCTGAAGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTTGAAGGACAATCCAAGTATTAACGAAACCTACACCAACACAACTAAACTTATGGAGTATTTGAAATCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGATGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGTGAAAAGTAATGTTGTTGAAGATTTAGGGGATAAGCTTAACATCGAAGATGAAGATGATGATGGGGGGATGGTGTAA

Coding sequence (CDS)

ATGGTTCCGTTTGGATTTGACCTTACGGAGGTGGAGGAAGGAAATAGAAAGGTAGGTGATGCAGTATGTTCTGCGAAGGACGTACTAGAAGGCTACGACAACATAGGTAGTGGTGGAAACAATCTTCCACTAGATGATGGCCCCATTGAAGACATACCAATATCAACACGTTTGAAAATTTTGGATAAGGGAAGAAAATGTCAACAAGAAGTCATGAAGAAGAGAACGAAGGTTTGTGTGGAACCTACAGTAGTGTCCCCATGTTTAAACGATACGTTAGAGGGCATGCTTGCATCAAATGAGAGCCCAGCTGTTCATAAAACTAAGAAGAAGGCATTGACTACAGAAGAGAAAGGGAAGAGGAAGATTGTGGAGGATGAGGATGGTAGTTCAATGCGGACGAAAGAGAAACAAAAAATACAGGAAGACCCATCCGGATTGAAACGACCTAGCACTAGGTTCAAGTTTATAATGCTGGGAAATTGTGAGGAGATTTATAGGAACAATGTGGTTGAAGACGAATCGAAGAACGGTGTTGATGTAGAATATGATAAAGAAGTTGACGGGGGAGAATCCTCAGATTTTGACAAATGGTTTGACGATATGGTAGACGAAGCTTATGAAGAGATAAAAAAAAATGGAACAAACAACAAAAGCTGCCAATACAACGATATAGATTGTGTGGGGCCTGAAGAAGCTGTTATTGAAAAGGTAGTTTCTGGACAAGTCGAACCAAATGTAGGTTTGAAGGACAATCCAAGTATTAACGAAACCTACACCAACACAACTAAACTTATGGAGTATTTGAAATCGTCCTTTGAGGGTATTAACAAACGGATGGATGAGATGAGGGTAGAGACTAGTAAAAAGTTTGATGAGATGTGGAGTGTGTTGAACGAGATTGCGAGTGATGTAAAAGGATTGAAAGTGAAAAGTAATGTTGTTGAAGATTTAGGGGATAAGCTTAACATCGAAGATGAAGATGATGATGGGGGGATGGTGTAA

Protein sequence

MVPFGFDLTEVEEGNRKVGDAVCSAKDVLEGYDNIGSGGNNLPLDDGPIEDIPISTRLKILDKGRKCQQEVMKKRTKVCVEPTVVSPCLNDTLEGMLASNESPAVHKTKKKALTTEEKGKRKIVEDEDGSSMRTKEKQKIQEDPSGLKRPSTRFKFIMLGNCEEIYRNNVVEDESKNGVDVEYDKEVDGGESSDFDKWFDDMVDEAYEEIKKNGTNNKSCQYNDIDCVGPEEAVIEKVVSGQVEPNVGLKDNPSINETYTNTTKLMEYLKSSFEGINKRMDEMRVETSKKFDEMWSVLNEIASDVKGLKVKSNVVEDLGDKLNIEDEDDDGGMV

Homology

The following BLAST results are available for this feature:

BLAST of Sed0005406 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0005406 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0005406 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0005406 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005406.1	Sed0005406.1	mRNA