Sed0005387 (gene) Chayote v1

Overview


Name	Sed0005387
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 7631231 .. 7631525 (-)
RNA-Seq Expression	Sed0005387
Synteny	Sed0005387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGCAGCAGCTTCTAGCCGCCTTCTTACTCTGCTCCAATCGCTCCCTTTCCATTTCTGTACCTCCAAGTCCCCAAATTGAAAGCTCAATCTCAATGAATTCCAACAACGACATGAAGAATCGATTCCCAGATCTGCCCCCGAGAAGAGGGCTGGTCTTGATCAAGATCTTGCAAAGCATCTTCGGATCCGCCAAATCCACAGGCAGGAGAGAAAAGGATTTCATATCTTCTGTTTCCACCACTCCGGACCCCGGCTCCAGTGGCTACAACTCGGACGCTCGGTCCGAGTCATGA

mRNA sequence

CCAGCAGCAGCTTCTAGCCGCCTTCTTACTCTGCTCCAATCGCTCCCTTTCCATTTCTGTACCTCCAAGTCCCCAAATTGAAAGCTCAATCTCAATGAATTCCAACAACGACATGAAGAATCGATTCCCAGATCTGCCCCCGAGAAGAGGGCTGGTCTTGATCAAGATCTTGCAAAGCATCTTCGGATCCGCCAAATCCACAGGCAGGAGAGAAAAGGATTTCATATCTTCTGTTTCCACCACTCCGGACCCCGGCTCCAGTGGCTACAACTCGGACGCTCGGTCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCCAACAACGACATGAAGAATCGATTCCCAGATCTGCCCCCGAGAAGAGGGCTGGTCTTGATCAAGATCTTGCAAAGCATCTTCGGATCCGCCAAATCCACAGGCAGGAGAGAAAAGGATTTCATATCTTCTGTTTCCACCACTCCGGACCCCGGCTCCAGTGGCTACAACTCGGACGCTCGGTCCGAGTCATGA

Protein sequence

MNSNNDMKNRFPDLPPRRGLVLIKILQSIFGSAKSTGRREKDFISSVSTTPDPGSSGYNSDARSES

Homology

[Close]

BLAST of Sed0005387 vs. NCBI nr
Match: KAE8652730.1 (hypothetical protein Csa_013247 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 5.5e-05
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MNSNNDMKNRFPDLPPRRGLVLIKILQSIFGSAKS------TGRREKD----------FI 60
          MNS  D + R  + PPRRGL+ IKI +SIF + KS        RRE +            
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60

Query: 61 SSVSTTPDPGSSGYNSDARSES 67
          +S STTP PG+SGYNS+A+ ES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 82

[Close]

BLAST of Sed0005387 vs. ExPASy TrEMBL
Match: A0A0A0LV79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MNSNNDMKNRFPDLPPRRGLVLIKILQSIFGSAKS------TGRREKD----FISSVSTT 60
          MNS  D + R  + PPRRGL+ IKI +SIF + KS        RRE +      +S STT
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60

Query: 61 PDPGSSGYNSDARSES 67
          P PG+SGYNS+A+ ES
Sbjct: 61 PAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:

BLAST of Sed0005387 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652730.1	5.5e-05	45.12	hypothetical protein Csa_013247 [Cucumis sativus]	[more]

BLAST of Sed0005387 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV79	5.3e-06	48.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1	[more]

BLAST of Sed0005387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005387.1	Sed0005387.1	mRNA