Sed0005344 (gene) Chayote v1

Overview


Name	Sed0005344
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 4774502 .. 4774741 (+)
RNA-Seq Expression	Sed0005344
Synteny	Sed0005344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTTCATCGAGATTATGGACGCCGGCATCAGGATTTTCGCCAGATTTCATTCGCGTATTCCTCAGACTGGCCGGATGTACTACCATCCTCCGGCTAACTCCGACGACGGCCAACTGGAGTTTGGCCTCGCCGGCGCCGATGTGCCGTCGCACCTGATTGTTGTTGGTTGCGGTGACGCGGCCGCCGCCGACGGCGTTGAGAGTAATAATGAGTTTATTCTTTACTCTGTTTGA

mRNA sequence

ATGGGGAAGTTCATCGAGATTATGGACGCCGGCATCAGGATTTTCGCCAGATTTCATTCGCGTATTCCTCAGACTGGCCGGATGTACTACCATCCTCCGGCTAACTCCGACGACGGCCAACTGGAGTTTGGCCTCGCCGGCGCCGATGTGCCGTCGCACCTGATTGTTGTTGGTTGCGGTGACGCGGCCGCCGCCGACGGCGTTGAGAGTAATAATGAGTTTATTCTTTACTCTGTTTGA

Coding sequence (CDS)

ATGGGGAAGTTCATCGAGATTATGGACGCCGGCATCAGGATTTTCGCCAGATTTCATTCGCGTATTCCTCAGACTGGCCGGATGTACTACCATCCTCCGGCTAACTCCGACGACGGCCAACTGGAGTTTGGCCTCGCCGGCGCCGATGTGCCGTCGCACCTGATTGTTGTTGGTTGCGGTGACGCGGCCGCCGCCGACGGCGTTGAGAGTAATAATGAGTTTATTCTTTACTCTGTTTGA

Protein sequence

MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDGQLEFGLAGADVPSHLIVVGCGDAAAADGVESNNEFILYSV

Homology

[Close]

BLAST of Sed0005344 vs. NCBI nr
Match: KAG7014255.1 (hypothetical protein SDJN02_24430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 6.3e-16
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG----QLEFGLAGADVPSHLIV 60
          MGKF+EI+DAG+RI ARFHS  PQT RMYYHPPANS++G      EF L+G DV SH I 
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDSQEFRLSGGDVSSHQI- 60

Query: 61 VGCGDAAAADGVES-NNEFILYSV 80
          V C  AAA   V + + +F LYSV
Sbjct: 61 VPCSAAAAVVAVSAESTDFFLYSV 83

[Close]

BLAST of Sed0005344 vs. NCBI nr
Match: KAG6575700.1 (hypothetical protein SDJN03_26339, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDD----GQLEFGLAGADVPSHLIV 60
          MGKF+EI+DAG+RI ARFHS  PQT RMYYHPPANS++     + EF L+G DV SH I 
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEVHHSDRQEFRLSGGDVSSHQI- 60

Query: 61 VGCGDAAAADGVES-NNEFILYSV 80
          V C  AAA   V + + +F LYSV
Sbjct: 61 VPCSAAAAVVAVSAESTDFFLYSV 83

[Close]

BLAST of Sed0005344 vs. NCBI nr
Match: KGN45108.1 (hypothetical protein Csa_015813 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-15
Identity = 53/91 (58.24%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG------QLEFGLAGADVPSHL 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG      +L  G+   D  SH 
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IV--VGCGDAAAADGV----ESNNEFILYSV 80
          IV  V    AAAA  V      +NEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of Sed0005344 vs. NCBI nr
Match: KAA0058604.1 (hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 54/89 (60.67%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG--QLEFGLAG----ADVPSHL 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG    EF L G     D  SH 
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGDGDAASHQ 60

Query: 61 IV---VGCGDAAAADGVE-SNNEFILYSV 80
          IV   V    AAA   V   +NEFILYSV
Sbjct: 61 IVRCDVAERTAAAFLVVTVESNEFILYSV 89

[Close]

BLAST of Sed0005344 vs. NCBI nr
Match: TYK10407.1 (hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-13
Identity = 54/91 (59.34%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG--QLEFGLAG------ADVPS 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG    EF L G       D  S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGGGDGDAAS 60

Query: 61 HLIV---VGCGDAAAADGVE-SNNEFILYSV 80
          H IV   V    AAA   V   +NEFILYSV
Sbjct: 61 HQIVRCDVAERTAAAFLVVTVESNEFILYSV 91

[Close]

BLAST of Sed0005344 vs. ExPASy TrEMBL
Match: A0A0A0K6I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-15
Identity = 53/91 (58.24%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG------QLEFGLAGADVPSHL 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG      +L  G+   D  SH 
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGVGDGDAASHQ 60

Query: 61 IV--VGCGDAAAADGV----ESNNEFILYSV 80
          IV  V    AAAA  V      +NEFILYSV
Sbjct: 61 IVPCVAEPTAAAAAAVLVVTVESNEFILYSV 91

[Close]

BLAST of Sed0005344 vs. ExPASy TrEMBL
Match: A0A5A7UTW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00730 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 54/89 (60.67%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG--QLEFGLAG----ADVPSHL 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG    EF L G     D  SH 
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGDGDAASHQ 60

Query: 61 IV---VGCGDAAAADGVE-SNNEFILYSV 80
          IV   V    AAA   V   +NEFILYSV
Sbjct: 61 IVRCDVAERTAAAFLVVTVESNEFILYSV 89

[Close]

BLAST of Sed0005344 vs. ExPASy TrEMBL
Match: A0A5D3CEL3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00500 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.3e-14
Identity = 54/91 (59.34%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDG--QLEFGLAG------ADVPS 60
          MGK +EI+DAG RI ARFHS  PQTGRMYYHPPANSDDG    EF L G       D  S
Sbjct: 1  MGKLVEILDAGARIVARFHSHCPQTGRMYYHPPANSDDGHHSEEFRLGGGGGGGDGDAAS 60

Query: 61 HLIV---VGCGDAAAADGVE-SNNEFILYSV 80
          H IV   V    AAA   V   +NEFILYSV
Sbjct: 61 HQIVRCDVAERTAAAFLVVTVESNEFILYSV 91

[Close]

BLAST of Sed0005344 vs. ExPASy TrEMBL
Match: A0A6J1JW88 (uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDGQ----LEFGLAGADVPSHLIV 60
          MGKF+EI+DAG+RI ARFHS  PQT RMYYHPPANS++G      EF L+  DV SH I 
Sbjct: 1  MGKFVEILDAGVRIVARFHSHCPQTARMYYHPPANSNEGHHSDLQEFRLSSGDVSSHQI- 60

Query: 61 VGCGDAAAADGVESNNE 74
          V C  AAA   V +  +
Sbjct: 61 VPCSAAAAVVAVSAERK 76

[Close]

BLAST of Sed0005344 vs. ExPASy TrEMBL
Match: W9R4I1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANSDDGQ------LEFGLAGADVPSHL 60
          MGKF+EI+D G+RI ARFHS  PQT RMYYHPPAN+D+        L +G  G D    +
Sbjct: 1  MGKFVEILDQGVRIVARFHSHCPQTSRMYYHPPANADNNHHNNNHFLFYGGDGGD--GDV 60

Query: 61 IVVGCGDAAAADGVESNNEFILYSV 80
           V+ CG  A   G E N EFILYSV
Sbjct: 61 KVMKCGPKAIGGGAE-NKEFILYSV 82

[Close]

BLAST of Sed0005344 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MGKFIEIMDAGIRIFARFHSRIPQTGRMYYHPPANS 37
          MGK+ E++D G+RI ARFHS  PQT R+YYHPP+++
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDN 36

The following BLAST results are available for this feature:

BLAST of Sed0005344 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014255.1	6.3e-16	59.52	hypothetical protein SDJN02_24430, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575700.1	3.1e-15	58.33	hypothetical protein SDJN03_26339, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45108.1	9.1e-15	58.24	hypothetical protein Csa_015813 [Cucumis sativus]	[more]
KAA0058604.1	1.0e-13	60.67	hypothetical protein E6C27_scaffold339G00730 [Cucumis melo var. makuwa]	[more]
TYK10407.1	1.7e-13	59.34	hypothetical protein E5676_scaffold459G00500 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0005344 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6I8	4.4e-15	58.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426490 PE=4 SV=1	[more]
A0A5A7UTW3	4.9e-14	60.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEL3	8.3e-14	59.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JW88	1.1e-13	57.14	uncharacterized protein LOC111488441 OS=Cucurbita maxima OX=3661 GN=LOC111488441...	[more]
W9R4I1	1.4e-13	54.12	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004679 PE=4 SV=1	[more]

BLAST of Sed0005344 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	2.1e-09	61.11	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983:SF10	SUBFAMILY NOT NAMED	coord: 1..79
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005344.1	Sed0005344.1	mRNA