Sed0005281 (gene) Chayote v1

Overview


Name	Sed0005281
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein LITTLE ZIPPER like
Location	LG05: 6830390 .. 6831255 (-)
RNA-Seq Expression	Sed0005281
Synteny	Sed0005281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTTCTAAACATTATTCTGCAAGAAAGAAAGATCATAATGTGCAATATCAGTGCAACAGACAACACTCTGTTTCATCAAATCCATACTTCCAGCAAAAGCAGAGGTTTAAAAAGGTTCAAACTTCAAGTTCAGAGGCTTACCAGGTTTCTTTTTCACAAAACCCCATTTCAAGTTTTGTTGTTTTTTTGGAACTTTTGTTTCGTTTGAAAATGTTGGTTGACATAATTAAATTTACCTCAACCTATCAGTTTAAATTTTTGATCGATTAATAGTTTAATATAATTCAGTAGGGTATCAGAGCGGGAGATGCTGAGTTCGAATCCTAGCCAAGTCGTTTCCTCTCCCAACTAAAATTGAATTTTGCTTATACGGAATTTCTCAAATTTCTAAGCTCACAATGAAGAGAAAAATTGGGTTGATCGGTGGTTTAACATAATTCAACAAAAAAAAAAAGGTTCTTTATTTATTTTTTTATTTTTATTTTTATAGTAGGAGGAGATCATGTGAAGAGAAGCTGGGGAAGGATATTGAGATGAAGAATCTGCAGCTGTATTTGGAGAACCAGACCATAATTGGAGAGAATGAGAAGTTGAGACAGAAAGCTAATATCCTTCATGAAGAGAATTTGGCCTTAATGACTGAGTTTCACAAGAAATTTCCACATTTATATCATACAAAATGATTGGAATCATCTCCCTTAGTGATTTCTAAATGTATTGAACTCTTTATTCAACATATATGTGGAATTTATGAAGAATTCATATAACTTGATAAAACTAGAGGGTAATTTATATAGTAGTGAGAGGTTGGGGAGTTGAAAATCTTTTAATTTTCAACATTTTTCTCTGTTACAAACCAGCAG

mRNA sequence

GCAACTTCTAAACATTATTCTGCAAGAAAGAAAGATCATAATGTGCAATATCAGTGCAACAGACAACACTCTGTTTCATCAAATCCATACTTCCAGCAAAAGCAGAGGTTTAAAAAGGTTCAAACTTCAAGTTCAGAGGCTTACCAGTAGGAGGAGATCATGTGAAGAGAAGCTGGGGAAGGATATTGAGATGAAGAATCTGCAGCTGTATTTGGAGAACCAGACCATAATTGGAGAGAATGAGAAGTTGAGACAGAAAGCTAATATCCTTCATGAAGAGAATTTGGCCTTAATGACTGAGTTTCACAAGAAATTTCCACATTTATATCATACAAAATGATTGGAATCATCTCCCTTAGTGATTTCTAAATGTATTGAACTCTTTATTCAACATATATGTGGAATTTATGAAGAATTCATATAACTTGATAAAACTAGAGGGTAATTTATATAGTAGTGAGAGGTTGGGGAGTTGAAAATCTTTTAATTTTCAACATTTTTCTCTGTTACAAACCAGCAG

Coding sequence (CDS)

ATGTGCAATATCAGTGCAACAGACAACACTCTGTTTCATCAAATCCATACTTCCAGCAAAAGCAGAGGTTTAAAAAGGTTCAAACTTCAAGTTCAGAGGCTTACCAGTAGGAGGAGATCATGTGAAGAGAAGCTGGGGAAGGATATTGAGATGAAGAATCTGCAGCTGTATTTGGAGAACCAGACCATAATTGGAGAGAATGAGAAGTTGAGACAGAAAGCTAATATCCTTCATGAAGAGAATTTGGCCTTAATGACTGAGTTTCACAAGAAATTTCCACATTTATATCATACAAAATGA

Protein sequence

MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK

Homology

[Close]

BLAST of Sed0005281 vs. NCBI nr
Match: KAG7036101.1 (Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.1e-31
Identity = 78/99 (78.79%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC I+AT   LFHQIHTS   R LKR KLQVQRL+SRRRS EEK GKDIE+KNLQLYLEN
Sbjct: 1   MC-ITATQRILFHQIHTSKNRRRLKRSKLQVQRLSSRRRSFEEKQGKDIELKNLQLYLEN 60

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK 100
           QTII ENEKLR+KANILH+ENLALMTEFHKKFPH    K
Sbjct: 61  QTIIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 98

[Close]

BLAST of Sed0005281 vs. NCBI nr
Match: XP_023534553.1 (protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 78/99 (78.79%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC I+AT   LFHQIHTS   R LKR KLQVQRL SRRRS EEK GKDIE+KNLQLYLEN
Sbjct: 1   MC-ITATQRILFHQIHTSKNRRRLKRSKLQVQRL-SRRRSFEEKQGKDIELKNLQLYLEN 60

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK 100
           QTII ENEKLR+KANILH+ENLALMTEFHKKFPH    K
Sbjct: 61  QTIIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 97

[Close]

BLAST of Sed0005281 vs. NCBI nr
Match: XP_022159680.1 (protein LITTLE ZIPPER 2-like isoform X2 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-29
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT+++ FHQIHTS   R LKR KLQVQRLTSRRR  EEK+GKDIE+KNLQLYLEN
Sbjct: 17  MC-ISATESSPFHQIHTSKNRRRLKRSKLQVQRLTSRRRCTEEKVGKDIELKNLQLYLEN 76

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHL 96
           QTII ENEKLR++ANILH+ENLALMTE  KKF HL
Sbjct: 77  QTIIEENEKLRERANILHQENLALMTELQKKFQHL 110

[Close]

BLAST of Sed0005281 vs. NCBI nr
Match: XP_022159679.1 (protein LITTLE ZIPPER 2-like isoform X1 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-27
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT+++ FHQIHTS   R LKR KLQVQRLT RRR  EEK+GKDIE+KNLQLYLEN
Sbjct: 17  MC-ISATESSPFHQIHTSKNRRRLKRSKLQVQRLT-RRRCTEEKVGKDIELKNLQLYLEN 76

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHL 96
           QTII ENEKLR++ANILH+ENLALMTE  KKF HL
Sbjct: 77  QTIIEENEKLRERANILHQENLALMTELQKKFQHL 109

[Close]

BLAST of Sed0005281 vs. NCBI nr
Match: XP_022922429.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 4.5e-27
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT + LFHQI TS   R  KR KLQV RLT  RR CEEKLGKDIE+KNLQLYL+N
Sbjct: 1   MC-ISATQSILFHQIQTSKNRRRSKRSKLQVLRLT--RRRCEEKLGKDIELKNLQLYLKN 60

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK 100
           QTII EN+KLR+KANILH+EN+ALMTEF KKFPHL   K
Sbjct: 61  QTIIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of Sed0005281 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-08
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7  TDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGE 66
          TD           K +   +  L++  LT RRR  +E+  K++EM+NL+L++ENQ+II E
Sbjct: 13 TDTPTMRSASYHIKHKSKTQTHLRILNLTRRRRLLKEQ--KEMEMRNLKLFVENQSIIRE 72

Query: 67 NEKLRQKANILHEENLALMTEFHKKF 93
          NE L++KA +LH EN AL    H K+
Sbjct: 73 NEALKKKALLLHHENNALFALLHPKY 96

[Close]

BLAST of Sed0005281 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.1e-07
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 29  LQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGENEKLRQKANILHEENLALMTEF 88
           +++ RL+ RRR   E+  K +EM NL+LY+ENQ II ENEKL++KA +LH+EN  L +  
Sbjct: 69  VRIPRLSRRRRMWREE--KKMEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLL 128

Query: 89  HKK 92
             K
Sbjct: 129 QTK 129

[Close]

BLAST of Sed0005281 vs. ExPASy TrEMBL
Match: A0A6J1DZF5 (protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.3e-29
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT+++ FHQIHTS   R LKR KLQVQRLTSRRR  EEK+GKDIE+KNLQLYLEN
Sbjct: 17  MC-ISATESSPFHQIHTSKNRRRLKRSKLQVQRLTSRRRCTEEKVGKDIELKNLQLYLEN 76

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHL 96
           QTII ENEKLR++ANILH+ENLALMTE  KKF HL
Sbjct: 77  QTIIEENEKLRERANILHQENLALMTELQKKFQHL 110

[Close]

BLAST of Sed0005281 vs. ExPASy TrEMBL
Match: A0A6J1E319 (protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-27
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT+++ FHQIHTS   R LKR KLQVQRLT RRR  EEK+GKDIE+KNLQLYLEN
Sbjct: 17  MC-ISATESSPFHQIHTSKNRRRLKRSKLQVQRLT-RRRCTEEKVGKDIELKNLQLYLEN 76

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHL 96
           QTII ENEKLR++ANILH+ENLALMTE  KKF HL
Sbjct: 77  QTIIEENEKLRERANILHQENLALMTELQKKFQHL 109

[Close]

BLAST of Sed0005281 vs. ExPASy TrEMBL
Match: A0A6J1E3C5 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC ISAT + LFHQI TS   R  KR KLQV RLT  RR CEEKLGKDIE+KNLQLYL+N
Sbjct: 1   MC-ISATQSILFHQIQTSKNRRRSKRSKLQVLRLT--RRRCEEKLGKDIELKNLQLYLKN 60

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK 100
           QTII EN+KLR+KANILH+EN+ALMTEF KKFPHL   K
Sbjct: 61  QTIIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of Sed0005281 vs. ExPASy TrEMBL
Match: A0A0A0KKF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 70/99 (70.71%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MCNISATDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLEN 60
           MC +SAT + LFH I +S   R  KR   QV RLT  RR CEEKLGKDIE+KNLQLYLEN
Sbjct: 1   MC-VSATQSVLFHTIQSSKNRRSSKRSNFQVLRLT--RRRCEEKLGKDIELKNLQLYLEN 60

Query: 61  QTIIGENEKLRQKANILHEENLALMTEFHKKFPHLYHTK 100
           QTII ENEKLR+KANILH+ENLAL+TEF KKFPHL   K
Sbjct: 61  QTIIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

[Close]

BLAST of Sed0005281 vs. ExPASy TrEMBL
Match: A0A5B7C8X5 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_046809 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.7e-20
Identity = 49/83 (59.04%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 15 IHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGENEKLRQKA 74
          +H+S++ +  KR K+QV RL+ R+R C+EK+GKD+E+KNL+LY+EN TI+ ENEKLR+KA
Sbjct: 7  LHSSTRKQRSKRSKIQVHRLSRRKRRCQEKVGKDMEVKNLKLYVENMTILQENEKLRKKA 66

Query: 75 NILHEENLALMTEFHKKFPHLYH 98
          N+LH+ENL+L++EF KKF H +H
Sbjct: 67 NLLHQENLSLISEFQKKFSHFHH 89

[Close]

BLAST of Sed0005281 vs. TAIR 10
Match: AT3G60890.1 (protein binding )

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 7  TDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGE 66
          TD           K +   +  L++  LT RRR  +E+  K++EM+NL+L++ENQ+II E
Sbjct: 13 TDTPTMRSASYHIKHKSKTQTHLRILNLTRRRRLLKEQ--KEMEMRNLKLFVENQSIIRE 72

Query: 67 NEKLRQKANILHEENLALMTEFHKKF 93
          NE L++KA +LH EN AL    H K+
Sbjct: 73 NEALKKKALLLHHENNALFALLHPKY 96

[Close]

BLAST of Sed0005281 vs. TAIR 10
Match: AT3G60890.2 (protein binding )

HSP 1 Score: 57.8 bits (138), Expect = 5.9e-09
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 7  TDNTLFHQIHTSSKSRGLKRFKLQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGE 66
          TD           K +   +  L++  LTSRRR    K  K++EM+NL+L++ENQ+II E
Sbjct: 13 TDTPTMRSASYHIKHKSKTQTHLRILNLTSRRRRL-LKEQKEMEMRNLKLFVENQSIIRE 72

Query: 67 NEKLRQKANILHEENLALMTEFHKKF 93
          NE L++KA +LH EN AL    H K+
Sbjct: 73 NEALKKKALLLHHENNALFALLHPKY 97

[Close]

BLAST of Sed0005281 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 54.3 bits (129), Expect = 6.5e-08
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 29  LQVQRLTSRRRSCEEKLGKDIEMKNLQLYLENQTIIGENEKLRQKANILHEENLALMTEF 88
           +++ RL+ RRR   E+  K +EM NL+LY+ENQ II ENEKL++KA +LH+EN  L +  
Sbjct: 69  VRIPRLSRRRRMWREE--KKMEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLL 128

Query: 89  HKK 92
             K
Sbjct: 129 QTK 129

The following BLAST results are available for this feature:

BLAST of Sed0005281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036101.1	5.1e-31	78.79	Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534553.1	2.1e-29	78.79	protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022159680.1	4.8e-29	77.89	protein LITTLE ZIPPER 2-like isoform X2 [Momordica charantia]	[more]
XP_022159679.1	3.4e-27	76.84	protein LITTLE ZIPPER 2-like isoform X1 [Momordica charantia]	[more]
XP_022922429.1	4.5e-27	73.74	protein LITTLE ZIPPER 1-like [Cucurbita moschata]	[more]

BLAST of Sed0005281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZX5	4.8e-08	40.70	Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1	[more]
F4IG60	9.1e-07	49.21	Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1	[more]

BLAST of Sed0005281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZF5	2.3e-29	77.89	protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1E319	1.7e-27	76.84	protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1E3C5	2.2e-27	73.74	protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 ...	[more]
A0A0A0KKF8	4.1e-26	70.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1	[more]
A0A5B7C8X5	5.7e-20	59.04	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_046809...	[more]

BLAST of Sed0005281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60890.1	3.4e-09	40.70	protein binding	[more]
AT3G60890.2	5.9e-09	41.86	protein binding	[more]
AT2G45450.1	6.5e-08	49.21	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	PANTHER	PTHR33601:SF21	OS09G0520500 PROTEIN	coord: 1..95
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005281.1	Sed0005281.1	mRNA