Sed0005229 (gene) Chayote v1

Overview


Name	Sed0005229
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribonucloprotein
Location	LG11: 978378 .. 980853 (+)
RNA-Seq Expression	Sed0005229
Synteny	Sed0005229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAGAATTTTGAAGCTCATAAACCCTAATAATTTTCTTTCCTTCGAATTTCGCTCACTGTATTAAAACCCTACGATTCGAAATGGTACTGCGTCTTTGTTACAGATTCATATGAAGCACTTGTATTGATTTTGTTTTCTTGGATTTTAATGGCTGTTTCGATTTTGCAGACAGGAGAAACGGTGAATCCCAAAGCCTATCCATTGGCCGATGCACAGCTTACAATCACCATTCTTGATCTTGTTCAGCAAGCTGCTAATTACAAACAGCTCAAAAAGGGCGCTAATGAAGGTACCCTAATTTTTCGTGTGTTGGTGTCGTTTAATTTGTAGAAATTGTTCCCTATTGGTGGTGCAGTTGTCGAGCGAGGTTGTTCGCCTCTGTTTTCTCCGTTGTGTCTCGGTGTCTGGTCTAGGGATGGATGGGGTGTTTATCGAATTTGGTGCGTTAATAAAAATTGAAAACCGACGAAATCGAACCAAACCAATCTGTATTTTTAGGTCTTTCACATAGTATTGAACATAGGTTATTGGATTGGTTTGGTTTGGTTTTGTTTGTAAAAAAGTATTAAAAATCAAATTGAATCAGTATTGATTTATTTACTCTCATTTTTCTTTTTATGTGTTAGTTAATATTTTATTGGTAAATGATAATTATTTTGTTTGATTTAATTATAAATTTTGAGAACTTTTTAGTAAAATATGGTTTGGTTCCTCGTTGAATTAATTGAATTGATTTGGTCTTCGGTTTGACCTGAAATTGAAGAAAACCGAACCAATATTATCCCTAATCTAGGATGCATGAAAGTGAAGGTCCGATATCACTTTCAAATAATAAATATGAAAAAGTTTTTAGATATGTAAAAAGTATATTGAGTGAGGGTTTTTGTGGTTTTTGGTTTTTTTGGCTAATAGTTTTGTTTTAATGGAGTTTCAGCCACCAAGACCCTGAACAGAGGGATCTCGGAGTTTGTAGTTATGGCTGCCGACACTGAGCCGCTTGAGATTCTTCTGCATCTTCCTTTGTTGGCGGAGGATAAGGTAAAAATACTTATTTACTGAGCTATCGATTGAATAATATGTTTTTCTCCAATATCTAGCTTAGGGACAGACGTGGTTACCCTTGTTTAAAAAAAAATAATATGTTTAGGCATTTTATTACATGTTAGGATTTAGACTCTCTACTTGTCGAGGGGTGACCTTGTTGGTAGAGCCTAGAGGCTTGGGGTCTACTTTAGAGGTCTTTGGTATAAAACTCAAGAGTGATTTTAATTGTAAAACCTTTGGTTATCTTCTAGGTTCAAGTCTTGGAATGGGTGCAGATGCCTTTGAGTTGTAGTGGGGCAAAGTTTCGATTCTTGATCATATTAAAATGTTTTAGATTTTAGCCCCTCTAGAGAGATGATAGTTTGCTTTACTTTCTTGTTTTTGTTACTTGTGGACGCTCTCAATGAGCAAGCCCCTGATGCATAGCTTTAGTTACCATTGTTGCTTTTAATGTGTTCCATATTTTTGTTGCGCCTTAATTCCATACATCAATGAAATTGTTTCTTATCCAAAAAAAATATTTTTTTTGTGCCATGGAAACCTGTGGTTGTTAATTGTTATTAGGGAATAAATGTAACAAGGTAGTAGAGTACTTCCAAATTTGAGTAGAAGCGGTTAACTTCAAGGCACTGTTCTTTATATTACAGATTTTCAGTTTGCTATTATTATTAGTATTCCCTCCAGATTTCAACTATAGCATGATTACAAAAAACTTAGCTAGTGAGATAATAAAGTAGAAAAACTATAATCTTGTGGATGGTTCTTTAATTATATTGTGTATATTTCTTTTAAACAATATTGTGTATATTAGGTTCACAGTTCATTTTTATATGCAGACATTTGATCATATGCAGTATTCACACCTTTTCACACTTCCTGTTAAGTAAAATCATAATTCCATCTGCTCAATTCTCAGATTTATAATGGTGCTTTGTTGTTTAAATATGCAGAATGTGCCCTACGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGTGGAGTCACGAGACCTGTAATTTCGTGTTCCGTAACGACAAACGAAGGAAGCCAATTGAAATCCCAGATACAGCAACTGAAGGTAATCATCACCCAACTCTTTTATGTGGTAGAAGTATGTATTATGCTAATTTAGGTCTAAATGCAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATTTCTATGATGATGGTATTCGGTATGACGGGCTTCTTTGATCGTGTCGTGGTCGCTTCTCTGGAGGCTTTGACTGAAGTTGTTGTGCAATTAGGAAGACTTTGTCTTGGTATTATTAACCTTATATATACGTTGAGCTGTTCTTTTTTTGTTATGTTGAGAGTGGAAAATGCTCGTACAATTTTATTGACAGTTTATTAAAGCTAATGATACCATTGAAGACGTGCATGGTTTGTTCATAAAAAA

mRNA sequence

GTCAAGAATTTTGAAGCTCATAAACCCTAATAATTTTCTTTCCTTCGAATTTCGCTCACTGTATTAAAACCCTACGATTCGAAATGACAGGAGAAACGGTGAATCCCAAAGCCTATCCATTGGCCGATGCACAGCTTACAATCACCATTCTTGATCTTGTTCAGCAAGCTGCTAATTACAAACAGCTCAAAAAGGGCGCTAATGAAGCCACCAAGACCCTGAACAGAGGGATCTCGGAGTTTGTAGTTATGGCTGCCGACACTGAGCCGCTTGAGATTCTTCTGCATCTTCCTTTGTTGGCGGAGGATAAGAATGTGCCCTACGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGTGGAGTCACGAGACCTGTAATTTCGTGTTCCGTAACGACAAACGAAGGAAGCCAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATTTCTATGATGATGGTATTCGGTATGACGGGCTTCTTTGATCGTGTCGTGGTCGCTTCTCTGGAGGCTTTGACTGAAGTTGTTGTGCAATTAGGAAGACTTTGTCTTGGTATTATTAACCTTATATATACGTTGAGCTGTTCTTTTTTTGTTATGTTGAGAGTGGAAAATGCTCGTACAATTTTATTGACAGTTTATTAAAGCTAATGATACCATTGAAGACGTGCATGGTTTGTTCATAAAAAA

Coding sequence (CDS)

ATGACAGGAGAAACGGTGAATCCCAAAGCCTATCCATTGGCCGATGCACAGCTTACAATCACCATTCTTGATCTTGTTCAGCAAGCTGCTAATTACAAACAGCTCAAAAAGGGCGCTAATGAAGCCACCAAGACCCTGAACAGAGGGATCTCGGAGTTTGTAGTTATGGCTGCCGACACTGAGCCGCTTGAGATTCTTCTGCATCTTCCTTTGTTGGCGGAGGATAAGAATGTGCCCTACGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGTGGAGTCACGAGACCTGTAATTTCGTGTTCCGTAACGACAAACGAAGGAAGCCAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA

Protein sequence

MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI

Homology

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BLAST of Sed0005229 vs. NCBI nr
Match: XP_027939083.1 (NHP2-like protein 1 [Vigna unguiculata])

HSP 1 Score: 247.7 bits (631), Expect = 5.5e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. NCBI nr
Match: XP_004488534.1 (NHP2-like protein 1 [Cicer arietinum] >XP_013443475.1 NHP2-like protein 1 [Medicago truncatula] >AFK44952.1 unknown [Medicago truncatula] >KEH17500.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Medicago truncatula] >RHN74155.1 putative 50S ribosomal protein L30e [Medicago truncatula])

HSP 1 Score: 246.9 bits (629), Expect = 9.4e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. NCBI nr
Match: XP_014507758.1 (NHP2-like protein 1 [Vigna radiata var. radiata] >XP_017428792.1 PREDICTED: NHP2-like protein 1 [Vigna angularis] >KOM33043.1 hypothetical protein LR48_Vigan01g259900 [Vigna angularis] >BAT76363.1 hypothetical protein VIGAN_01435100 [Vigna angularis var. angularis])

HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEPVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. NCBI nr
Match: NP_001235882.1 (uncharacterized protein LOC100527424 [Glycine max] >XP_007142301.1 hypothetical protein PHAVU_008G269000g [Phaseolus vulgaris] >ACU16514.1 unknown [Glycine max] >ESW14295.1 hypothetical protein PHAVU_008G269000g [Phaseolus vulgaris] >KHN47161.1 NHP2-like protein 1 [Glycine soja])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. NCBI nr
Match: XP_028188043.1 (NHP2-like protein 1 [Glycine soja] >KAG4977226.1 hypothetical protein JHK86_036700 [Glycine max] >KAG5130530.1 hypothetical protein JHK84_036927 [Glycine max] >KRH20281.1 hypothetical protein GLYMA_13G167800v4 [Glycine max] >RZB81429.1 NHP2-like protein 1 [Glycine soja])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 26  MTGETVNPKAYPLADAQLSITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 85

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 86  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 145

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 146 DAIEKLLI 153

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BLAST of Sed0005229 vs. ExPASy Swiss-Prot
Match: Q5XH16 (NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI+CSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQ 120

Query: 121 DAIEKLLI 129
            AIE+LL+
Sbjct: 121 QAIERLLV 128

[Close]

BLAST of Sed0005229 vs. ExPASy Swiss-Prot
Match: Q6P8E9 (NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.9e-53
Identity = 104/128 (81.25%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD 
Sbjct: 1   MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI+C+VT  EGSQLK QIQ L+
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Sed0005229 vs. ExPASy Swiss-Prot
Match: Q3B8S0 (NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI+CSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Sed0005229 vs. ExPASy Swiss-Prot
Match: P55769 (NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI+CSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Sed0005229 vs. ExPASy Swiss-Prot
Match: Q4R5C6 (NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD 
Sbjct: 1   MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI+CSVT  EGSQLK QIQ ++
Sbjct: 61  EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ 120

Query: 121 DAIEKLLI 129
            +IE+LL+
Sbjct: 121 QSIERLLV 128

[Close]

BLAST of Sed0005229 vs. ExPASy TrEMBL
Match: I3SXG0 (Ribonucloprotein OS=Medicago truncatula OX=3880 GN=25479574 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. ExPASy TrEMBL
Match: A0A1S2XFE9 (Ribonucloprotein OS=Cicer arietinum OX=3827 GN=LOC101500272 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. ExPASy TrEMBL
Match: A0A1S3UNW0 (Ribonucloprotein OS=Vigna radiata var. radiata OX=3916 GN=LOC106767391 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEPVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. ExPASy TrEMBL
Match: A0A0L9TR38 (Ribonucloprotein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g259900 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEPVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. ExPASy TrEMBL
Match: A0A0S3R6U0 (Ribonucloprotein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G435100 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.0e-62
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGEPVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 233.8 bits (595), Expect = 7.7e-62
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-61
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEVVNPKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 228.4 bits (581), Expect = 3.2e-60
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLK 120
           EPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVI+CSVT+NE SQLKSQIQ LK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLK 120

Query: 121 DAIEKLLI 129
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128

[Close]

BLAST of Sed0005229 vs. TAIR 10
Match: AT5G20160.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 217.2 bits (552), Expect = 7.5e-57
Identity = 119/160 (74.38%), Postives = 123/160 (76.88%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE------------------- 60
           MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                   
Sbjct: 1   MTGEVVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEGIRLLLMCVCLSYLLSLMF 60

Query: 61  -------------ATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
                        ATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQA
Sbjct: 61  VKLFLIYLNLFISATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120

Query: 121 LGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI 129
           LGRACGVTRPVI+CSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 121 LGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 160

[Close]

BLAST of Sed0005229 vs. TAIR 10
Match: AT4G12600.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-52
Identity = 117/183 (63.93%), Postives = 122/183 (66.67%), Query Frame = 0


Query: 1   MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADT
Sbjct: 1   MTVEGVNPKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADT 60

Query: 61  EPLEILLHLPLLAEDK-------------------------------------------- 120
           EPLEILLHLPLLAEDK                                            
Sbjct: 61  EPLEILLHLPLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWL 120

Query: 121 -----------NVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEK 129
                      NVPYVFVPSKQALGRAC VTRPVI+CSVT+NE SQLKSQIQ LKDAIEK
Sbjct: 121 LDSSFEIVIVDNVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEK 180

The following BLAST results are available for this feature:

BLAST of Sed0005229 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027939083.1	5.5e-62	99.22	NHP2-like protein 1 [Vigna unguiculata]	[more]
XP_004488534.1	9.4e-62	98.44	NHP2-like protein 1 [Cicer arietinum] >XP_013443475.1 NHP2-like protein 1 [Medic...	[more]
XP_014507758.1	1.2e-61	99.22	NHP2-like protein 1 [Vigna radiata var. radiata] >XP_017428792.1 PREDICTED: NHP2...	[more]
NP_001235882.1	1.6e-61	98.44	uncharacterized protein LOC100527424 [Glycine max] >XP_007142301.1 hypothetical ...	[more]
XP_028188043.1	1.6e-61	98.44	NHP2-like protein 1 [Glycine soja] >KAG4977226.1 hypothetical protein JHK86_0367...	[more]

BLAST of Sed0005229 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XH16	4.9e-53	81.25	NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1	[more]
Q6P8E9	4.9e-53	81.25	NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1	[more]
Q3B8S0	1.6e-51	78.91	NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3	[more]
P55769	1.6e-51	78.91	NHP2-like protein 1 OS=Homo sapiens OX=9606 GN=SNU13 PE=1 SV=3	[more]
Q4R5C6	1.6e-51	78.91	NHP2-like protein 1 OS=Macaca fascicularis OX=9541 GN=SNU13 PE=2 SV=1	[more]

BLAST of Sed0005229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I3SXG0	4.6e-62	98.44	Ribonucloprotein OS=Medicago truncatula OX=3880 GN=25479574 PE=2 SV=1	[more]
A0A1S2XFE9	4.6e-62	98.44	Ribonucloprotein OS=Cicer arietinum OX=3827 GN=LOC101500272 PE=3 SV=1	[more]
A0A1S3UNW0	6.0e-62	99.22	Ribonucloprotein OS=Vigna radiata var. radiata OX=3916 GN=LOC106767391 PE=3 SV=1	[more]
A0A0L9TR38	6.0e-62	99.22	Ribonucloprotein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g259900 PE=3 SV=1	[more]
A0A0S3R6U0	6.0e-62	99.22	Ribonucloprotein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G435100 ...	[more]

BLAST of Sed0005229 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20160.1	7.7e-62	92.97	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.3e-61	92.19	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	3.2e-60	91.41	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.2	7.5e-57	74.38	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.2	1.5e-52	63.93	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 38..48 score: 87.27 coord: 21..36 score: 65.0 coord: 82..94 score: 83.08 coord: 8..21 score: 62.86
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 70..80 score: 59.09 coord: 80..94 score: 51.21 coord: 35..49 score: 47.88 coord: 54..67 score: 48.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..128 e-value: 1.1E-57 score: 195.2
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 6..126
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 23..111 e-value: 2.0E-26 score: 91.6
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 4..128
None	No IPR available	PANTHER	PTHR23105:SF158	NHP2-LIKE PROTEIN 1	coord: 4..128
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 73..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005229.1	Sed0005229.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031428	box C/D RNP complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005840	ribosome
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding