Sed0005210 (gene) Chayote v1

Overview


Name	Sed0005210
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase V subunit 7-like
Location	LG02: 49993130 .. 49995581 (-)
RNA-Seq Expression	Sed0005210
Synteny	Sed0005210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAATATCTGAGAAAAGACGAAAAGCAAGGATGGGAGCAGCTTCCATTTGCAAAGATCCATATAATATTATTGTGTTTCTATAAAAATGGCGAAACCACCATTGCCCATTGCTTATCCATTTCTCACTTCGCCAATCATAATATCCCAACTCTCCCTAATTTCTACCCAATTTCTTTTTTCTAGCTCTTCGCATTTCTCGCCGCCGCCGCCGCCGCTCCTCCTCCTCCTCCGCCGCCGCCGCTCTCAATTTCTCCTTACAGGTAACTAATTCCTCCTCCTCCTCCTCATCATCTACACTACAGCACACGCCTTTGTAATCCCTGTTCGCATCATAATTTTGATTTTCCAGAGTTCAGGTCTGTGTTTGAATTTTTAAAATTGGGGATCTGTACCCGATTCTGCTTCTCTGTAGCTGCTGGATAGTTTAATTTCTACATCCAGGCAGTGTCTGTGATTTCTCCTACGCTGTTTGATTTTTTATTCGATTCTCTGTTTCGATGTTGAGATCATTCGGATTTATCGTGGAGTTTGATCCACTGGCGATCGTAAAGCTCCTTTAATTGAATGAATGGATTGGATTTGGCTTAGTTTTTAATTGAATGAATCGCCGACCATAATCCGGTGGATTCTTTGCTTATTCCTCATTGTTCCCTTTGGAATTTTTAGAATCATCAAGCACTCTGCTATCTTTGTCAGAATCCTCACTTTCTGTAGAGTTAAAGGGTATATTTTAATCGCAGTGCGATCTTCCCATTTAAAACATGGCGAGATCAAGCTCCTAATACCGATTTCCACTACTTCTCTGCTAGATTTAGTGTATAATATTCGTTAGATAGATACAATCCTCTTTACAAGACTTGTTTGAAGGGGTTTGTCAAACATTTGAGAATTTCCAACCGTTGAAGCTAAGGATTTCAAGTCATGCTTTCTTGAGAGATCCCTGGTTCGAGGAGGCTGGAAAGCGCTTAAACTAGAATACCTTTCGAAGTATCTTGGTGCCACAGTCCAGGGGACGGGCCAGTGGGGTTTTCAAAAAAGTAAATTGCTGAATTTTTATTTTGTTCTTTCCTTTGCGCTAATCTTAGAGGCCAACATGAAACAACTGTTTCATATCTTATCTTTATCCTTCATTTGATGCTTGGAGATATGACTCAATATCTCAGTCTGAAGTATTTTTCTCCAAGTGGATGAATTCACACGGTTTCATGATTGAATATTTGTCAAATAGTGATAAAGTCTTGTTCTATCACAAATCCCATCGATCAGTGAGTCAATTCATATCAAATATGTATGTTAGTATTCAAATGGAGGTTGGTTACCCTTTATATTGCCTAGACATTAGCTTGACTTTACGCATTCGCTTTCACTGGCTCAGTCTTCTAGTTTTGTCTGGAAATAGAGCTCTTTTTTCGCCTAGCCTAGAAAGCAAACTTGAGGCTCAATGTTTCTTTCACTTCAGTCCTCAACATTTTCTATTTTTCGCTTCCAATTTCCTACAAGAAGTTAGATAGGTAAATGTTCTTAACAATTCTGTTGTTTTTCTTGATATTTATCAGATCTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGGAAGTCATGGCCGAAAAGGAAAAGAGAGATGGTCTCAACTTCCAGAGGTACATTATAACATGTCTATTAGAAAACCTATTAAAGGAGAAGGCCAGCAAAGACCATGGCTATTATCTTGCTGTTACCAGCTTGAAGAGCGTAGGCAAGGGAGAGACAAAGAACGAGTCTCCGTGTGTTTCATTCCCCATTACCTTTAGTTGTCGAACCTTTTTGCCTTTCGAGGGAGAGATCTTGCACGGAGTTGTTCGACACATATTTCGGCGTGGATTACTCTTAAAATGTGGACCGATCAAGTATGTGTTCCTTTCCGTTCGTAAAATGCCAACCTACCATTACGTTGGTGGTGAAAATCCTGTTTTCTCAAGCAACAAATTTGCAACAATTGGATACGACGTCGTTGTACGGTTCAGCGTGCTTGGTGTGAGGTGGATAGAGAAAAGAGGATGCATAAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAATAACTCACTTGGACCTATTTCGTTGTCTGATTCCGATGAGTTGGACTTGTAAATTTAGAACATAAACCACAAACTTGGGAATGCTTCATATTGTAATATATTCTTACACGGCTTGCTGATTACTTGTCTTCTGCATCTTTATATGTTTGTTGTTCTTCATGGCAATGATAAATGATAATTGAAGATTCTTGTAGGATGTTAATGTGAATTTCTTGAGTTGGAAAGTAGATATTTGCAAAACAATAATGTGGTATCAAATTGATGTTTTATGTTGCTGTTTTTTCATTGGCTCAAATAGAATTCGTTGCTGTTTTTTTCGCCTATGTCGATGTGTGCTTGACATAAAGTTATCGCCATAAATAT

mRNA sequence

GATAAATATCTGAGAAAAGACGAAAAGCAAGGATGGGAGCAGCTTCCATTTGCAAAGATCCATATAATATTATTGTGTTTCTATAAAAATGGCGAAACCACCATTGCCCATTGCTTATCCATTTCTCACTTCGCCAATCATAATATCCCAACTCTCCCTAATTTCTACCCAATTTCTTTTTTCTAGCTCTTCGCATTTCTCGCCGCCGCCGCCGCCGCTCCTCCTCCTCCTCCGCCGCCGCCGCTCTCAATTTCTCCTTACAGATCTGGGAAATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGGAAGTCATGGCCGAAAAGGAAAAGAGAGATGGTCTCAACTTCCAGAGGTACATTATAACATGTCTATTAGAAAACCTATTAAAGGAGAAGGCCAGCAAAGACCATGGCTATTATCTTGCTGTTACCAGCTTGAAGAGCGTAGGCAAGGGAGAGACAAAGAACGAGTCTCCGTGTGTTTCATTCCCCATTACCTTTAGTTGTCGAACCTTTTTGCCTTTCGAGGGAGAGATCTTGCACGGAGTTGTTCGACACATATTTCGGCGTGGATTACTCTTAAAATGTGGACCGATCAAGTATGTGTTCCTTTCCGTTCGTAAAATGCCAACCTACCATTACGTTGGTGGTGAAAATCCTGTTTTCTCAAGCAACAAATTTGCAACAATTGGATACGACGTCGTTGTACGGTTCAGCGTGCTTGGTGTGAGGTGGATAGAGAAAAGAGGATGCATAAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAATAACTCACTTGGACCTATTTCGTTGTCTGATTCCGATGAGTTGGACTTGTAAATTTAGAACATAAACCACAAACTTGGGAATGCTTCATATTGTAATATATTCTTACACGGCTTGCTGATTACTTGTCTTCTGCATCTTTATATGTTTGTTGTTCTTCATGGCAATGATAAATGATAATTGAAGATTCTTGTAGGATGTTAATGTGAATTTCTTGAGTTGGAAAGTAGATATTTGCAAAACAATAATGTGGTATCAAATTGATGTTTTATGTTGCTGTTTTTTCATTGGCTCAAATAGAATTCGTTGCTGTTTTTTTCGCCTATGTCGATGTGTGCTTGACATAAAGTTATCGCCATAAATAT

Coding sequence (CDS)

ATGTTTTGTGAAGTGGAACTAGTGAGAGATGTGGAAGTCATGGCCGAAAAGGAAAAGAGAGATGGTCTCAACTTCCAGAGGTACATTATAACATGTCTATTAGAAAACCTATTAAAGGAGAAGGCCAGCAAAGACCATGGCTATTATCTTGCTGTTACCAGCTTGAAGAGCGTAGGCAAGGGAGAGACAAAGAACGAGTCTCCGTGTGTTTCATTCCCCATTACCTTTAGTTGTCGAACCTTTTTGCCTTTCGAGGGAGAGATCTTGCACGGAGTTGTTCGACACATATTTCGGCGTGGATTACTCTTAAAATGTGGACCGATCAAGTATGTGTTCCTTTCCGTTCGTAAAATGCCAACCTACCATTACGTTGGTGGTGAAAATCCTGTTTTCTCAAGCAACAAATTTGCAACAATTGGATACGACGTCGTTGTACGGTTCAGCGTGCTTGGTGTGAGGTGGATAGAGAAAAGAGGATGCATAAAAAAGGAGTTTGTGATGCTTGCTAGCTTAGAAGGTAATAACTCACTTGGACCTATTTCGTTGTCTGATTCCGATGAGTTGGACTTGTAA

Protein sequence

MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGKGETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPTYHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPISLSDSDELDL

Homology

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BLAST of Sed0005210 vs. NCBI nr
Match: XP_038877103.1 (DNA-directed RNA polymerase V subunit 7-like isoform X2 [Benincasa hispida])

HSP 1 Score: 350.5 bits (898), Expect = 9.0e-93
Identity = 170/190 (89.47%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELV+DVE+ AEKEKRD LNFQRYIITCLLENLLKEKA+KDHGY+LAVTSLKS+GK
Sbjct: 37  MFYEVELVKDVEITAEKEKRDALNFQRYIITCLLENLLKEKANKDHGYFLAVTSLKSIGK 96

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G   ++S CVSFPITFSCRTFLPFEGEILHGVV HIFRRGLLLKCGPIKYVFLS  KMPT
Sbjct: 97  GVVNSQSQCVSFPITFSCRTFLPFEGEILHGVVHHIFRRGLLLKCGPIKYVFLSACKMPT 156

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           YHYVGGENPVFSSN+FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 157 YHYVGGENPVFSSNEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 216

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 217 SLSDSDEFDL 226

[Close]

BLAST of Sed0005210 vs. NCBI nr
Match: XP_022924760.1 (DNA-directed RNA polymerase V subunit 7-like [Cucurbita moschata] >XP_023528651.1 DNA-directed RNA polymerase V subunit 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 172/192 (89.58%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MFCEVELVRDVEV  EKEKRDG+N QRYIITCLLENLLKEKASKDHGY+LAVTSLKS+GK
Sbjct: 1   MFCEVELVRDVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 60

Query: 61  GETKN--ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKM 120
           GE KN  ES CVSFPITFSCRTFLP EGEILHGVVRHIFRRGLLLKCGPIKYVFLS RKM
Sbjct: 61  GEVKNESESQCVSFPITFSCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 120

Query: 121 PTYHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 180
           PTYHYVGGENPVFSS + ATIG DVVVRFSVLGVRW+EKRGCIKKEFVMLASLEGN SLG
Sbjct: 121 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCIKKEFVMLASLEGNTSLG 180

Query: 181 PISLSDSDELDL 191
           PIS SDSDE DL
Sbjct: 181 PISSSDSDEFDL 192

[Close]

BLAST of Sed0005210 vs. NCBI nr
Match: KAG7018763.1 (DNA-directed RNA polymerase subunit 7-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 7.6e-92
Identity = 171/192 (89.06%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MFCEVELVRDVEV  EKEKRDG+N QRYIITCLLENLLKEKASKDHGY+LAVTSLKS+GK
Sbjct: 76  MFCEVELVRDVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 135

Query: 61  GETKN--ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKM 120
           GE KN  ES CVSFPITF CRTFLP EGEILHGVVRHIFRRGLLLKCGPIKYVFLS RKM
Sbjct: 136 GEVKNESESQCVSFPITFRCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 195

Query: 121 PTYHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 180
           PTYHYVGGENPVFSS + ATIG DVVVRFSVLGVRW+EKRGCIKKEFVMLASLEGN SLG
Sbjct: 196 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCIKKEFVMLASLEGNTSLG 255

Query: 181 PISLSDSDELDL 191
           PIS SDSDE DL
Sbjct: 256 PISSSDSDEFDL 267

[Close]

BLAST of Sed0005210 vs. NCBI nr
Match: XP_004134101.1 (DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >XP_004134102.1 DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >KGN56913.1 hypothetical protein Csa_009882 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 168/190 (88.42%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELVRDVE+  EKEKRD  NFQRYIITCLLENLLKEKA+KDHGY+L+VTSL+S+GK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G  KNES CVSFPITF CRTFLPFEGEILHGVVRHIF+RGLLLKCGPIKYVFLS RKMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y YVGGENPVFSS +FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of Sed0005210 vs. NCBI nr
Match: XP_008438585.1 (PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >XP_008438586.1 PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >KAA0049303.1 DNA-directed RNA polymerase V subunit 7-like [Cucumis melo var. makuwa] >TYK17255.1 DNA-directed RNA polymerase V subunit 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 168/190 (88.42%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELVRDVE+  EKEKRD  NFQRYIITCLLENLLKEKA+KDHGY+L+VTSLKS+GK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G  KNES CVSFPITF CRTFLPFEGEILHGVVRHIF+RGLLLKCGPIKY FLS RKMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y YVGGENPVFSS +FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot
Match: Q6NML5 (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.6e-39
Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVE+ RDV + A  +  +G +  + I+  LL++L+ EKA ++HG+YL +T+LKS+G 
Sbjct: 1   MFSEVEMARDVAICA--KHLNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GETKN-------ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFL 120
            +  N       ++  ++FP++F+CRTFLP  G+IL G V+ +   G  ++ GP++Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SVRKMPTYHYVGG-----ENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVML 180
           S+ KMP YHYV       E P F  +  + I   VVVRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGNNSLGPISLSDSDE 188
           A+LEGN S GPISL+ SDE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot
Match: A6QRA1 (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.5e-37
Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF +V+L  +V + AE     GL  +R I+  LLE    +KA+K+ GYY+AVT+L  +G+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G+ +  +  V FP+ FS  TF  F+GEI+HGVV  + + G+ ++CGPI+ V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y Y+ GENP+F + K + I  +  VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 181 S 182
           S
Sbjct: 181 S 176

[Close]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot
Match: Q8LE42 (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-31
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF +V+L  DV + AE +   GL  QR I+  LLE   KEKA+KD GY +  T L+++G+
Sbjct: 1   MFIKVKLPWDVTIPAE-DMDTGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G+ K ++  + FP+ F+   F  F+GEI+HGVV  + + G+ LK GP + ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGP 180
           Y ++ GENP F +   + I     VRF VL   W E     +K+F+ LAS++G+N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

[Close]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 44/155 (28.39%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF  + L R++++     +  G N +  +++ L+++ ++   S  HG+ +AVT ++++GK
Sbjct: 1   MFFHIVLERNMQL---HPRYFGRNLRDNLVSKLMKD-VEGTCSGRHGFVVAVTGIENIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMP- 120
           G  ++ +  V+FP+ + C  F PF+GEIL  VV  + + G   + GP++ +F+S   +P 
Sbjct: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 120

Query: 121 TYHYVGGENPVF-SSNKFATIGYDVVVRFSVLGVR 154
              +  G+ P + +S+    I  D  VR  ++G R
Sbjct: 121 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150

[Close]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.2e-12
Identity = 42/155 (27.10%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF  + L R++++     +  G N +  +++ L+++ ++   S  HG+ +A+T + ++GK
Sbjct: 1   MFFHIVLERNMQL---HPRFFGRNLKENLVSKLMKD-VEGTCSGRHGFVVAITGIDTIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMP- 120
           G  ++ +  V+FP+ + C  F PF+GEIL  VV  + + G   + GP++ +F+S   +P 
Sbjct: 61  GLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPD 120

Query: 121 TYHYVGGENPVF-SSNKFATIGYDVVVRFSVLGVR 154
              +  G+ P + +S+    I  +  VR  ++G R
Sbjct: 121 DMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150

[Close]

BLAST of Sed0005210 vs. ExPASy TrEMBL
Match: A0A6J1EFY9 (DNA-directed RNA polymerase V subunit 7-like OS=Cucurbita moschata OX=3662 GN=LOC111432163 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.7e-93
Identity = 172/192 (89.58%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MFCEVELVRDVEV  EKEKRDG+N QRYIITCLLENLLKEKASKDHGY+LAVTSLKS+GK
Sbjct: 1   MFCEVELVRDVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 60

Query: 61  GETKN--ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKM 120
           GE KN  ES CVSFPITFSCRTFLP EGEILHGVVRHIFRRGLLLKCGPIKYVFLS RKM
Sbjct: 61  GEVKNESESQCVSFPITFSCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 120

Query: 121 PTYHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 180
           PTYHYVGGENPVFSS + ATIG DVVVRFSVLGVRW+EKRGCIKKEFVMLASLEGN SLG
Sbjct: 121 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCIKKEFVMLASLEGNTSLG 180

Query: 181 PISLSDSDELDL 191
           PIS SDSDE DL
Sbjct: 181 PISSSDSDEFDL 192

[Close]

BLAST of Sed0005210 vs. ExPASy TrEMBL
Match: A0A1S3AWE2 (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC103483648 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 168/190 (88.42%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELVRDVE+  EKEKRD  NFQRYIITCLLENLLKEKA+KDHGY+L+VTSLKS+GK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G  KNES CVSFPITF CRTFLPFEGEILHGVVRHIF+RGLLLKCGPIKY FLS RKMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y YVGGENPVFSS +FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of Sed0005210 vs. ExPASy TrEMBL
Match: A0A5A7U0C3 (DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001070 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 168/190 (88.42%), Postives = 175/190 (92.11%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELVRDVE+  EKEKRD  NFQRYIITCLLENLLKEKA+KDHGY+L+VTSLKS+GK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLKSIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G  KNES CVSFPITF CRTFLPFEGEILHGVVRHIF+RGLLLKCGPIKY FLS RKMPT
Sbjct: 61  GVVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYAFLSARKMPT 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y YVGGENPVFSS +FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of Sed0005210 vs. ExPASy TrEMBL
Match: A0A0A0L5A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 168/190 (88.42%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVELVRDVE+  EKEKRD  NFQRYIITCLLENLLKEKA+KDHGY+L+VTSL+S+GK
Sbjct: 1   MFYEVELVRDVEITVEKEKRDAHNFQRYIITCLLENLLKEKANKDHGYFLSVTSLRSIGK 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G  KNES CVSFPITF CRTFLPFEGEILHGVVRHIF+RGLLLKCGPIKYVFLS RKMPT
Sbjct: 61  GIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKCGPIKYVFLSARKMPT 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y YVGGENPVFSS +FATIG DVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI
Sbjct: 121 YQYVGGENPVFSSKEFATIGNDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180

Query: 181 SLSDSDELDL 191
           SLSDSDE DL
Sbjct: 181 SLSDSDEFDL 190

[Close]

BLAST of Sed0005210 vs. ExPASy TrEMBL
Match: A0A6J1IQI7 (DNA-directed RNA polymerase V subunit 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479602 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 170/192 (88.54%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MFCEVELVR+VEV  EKEKRDG+N QRYIITCLLENLLKEKASKDHGY+LAVTSLKS+GK
Sbjct: 1   MFCEVELVRNVEVTVEKEKRDGVNLQRYIITCLLENLLKEKASKDHGYFLAVTSLKSIGK 60

Query: 61  GETKN--ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKM 120
            E KN  ES CVSFPITFSCRTFLP EGEILHGVVRHIFRRGLLLKCGPIKYVFLS RKM
Sbjct: 61  EEVKNESESQCVSFPITFSCRTFLPLEGEILHGVVRHIFRRGLLLKCGPIKYVFLSARKM 120

Query: 121 PTYHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLG 180
           PTYHYVGGENPVFSS + ATIG DVVVRFSVLGVRW+EKRGCI KEFVMLASLEGN SLG
Sbjct: 121 PTYHYVGGENPVFSSTQSATIGNDVVVRFSVLGVRWLEKRGCINKEFVMLASLEGNTSLG 180

Query: 181 PISLSDSDELDL 191
           PISLSDSDE DL
Sbjct: 181 PISLSDSDEFDL 192

[Close]

BLAST of Sed0005210 vs. TAIR 10
Match: AT4G14520.1 (DNA-directed RNA polymerase II-related )

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-40
Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVE+ RDV + A  +  +G +  + I+  LL++L+ EKA ++HG+YL +T+LKS+G 
Sbjct: 1   MFSEVEMARDVAICA--KHLNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GETKN-------ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFL 120
            +  N       ++  ++FP++F+CRTFLP  G+IL G V+ +   G  ++ GP++Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SVRKMPTYHYVGG-----ENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVML 180
           S+ KMP YHYV       E P F  +  + I   VVVRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGNNSLGPISLSDSDE 188
           A+LEGN S GPISL+ SDE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Sed0005210 vs. TAIR 10
Match: AT4G14520.2 (DNA-directed RNA polymerase II-related )

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-40
Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVE+ RDV + A  +  +G +  + I+  LL++L+ EKA ++HG+YL +T+LKS+G 
Sbjct: 1   MFSEVEMARDVAICA--KHLNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GETKN-------ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFL 120
            +  N       ++  ++FP++F+CRTFLP  G+IL G V+ +   G  ++ GP++Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SVRKMPTYHYVGG-----ENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVML 180
           S+ KMP YHYV       E P F  +  + I   VVVRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGNNSLGPISLSDSDE 188
           A+LEGN S GPISL+ SDE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Sed0005210 vs. TAIR 10
Match: AT4G14520.3 (DNA-directed RNA polymerase II-related )

HSP 1 Score: 162.5 bits (410), Expect = 3.2e-40
Identity = 83/199 (41.71%), Postives = 126/199 (63.32%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF EVE+ RDV + A  +  +G +  + I+  LL++L+ EKA ++HG+YL +T+LKS+G 
Sbjct: 1   MFSEVEMARDVAICA--KHLNGQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GETKN-------ESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFL 120
            +  N       ++  ++FP++F+CRTFLP  G+IL G V+ +   G  ++ GP++Y +L
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SVRKMPTYHYVGG-----ENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVML 180
           S+ KMP YHYV       E P F  +  + I   VVVRF VL VR+ E+    + ++ +L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

Query: 181 ASLEGNNSLGPISLSDSDE 188
           A+LEGN S GPISL+ SDE
Sbjct: 181 ATLEGNGSFGPISLTGSDE 197

[Close]

BLAST of Sed0005210 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF +V+L  +V + AE     GL  +R I+  LLE    +KA+K+ GYY+AVT+L  +G+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G+ +  +  V FP+ FS  TF  F+GEI+HGVV  + + G+ ++CGPI+ V+LS  KMP 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGPI 180
           Y Y+ GENP+F + K + I  +  VR  V+G++W+E    +++EF  LASLEG + LGP+
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWME----VEREFQALASLEG-DYLGPL 176

Query: 181 S 182
           S
Sbjct: 181 S 176

[Close]

BLAST of Sed0005210 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 75/179 (41.90%), Postives = 110/179 (61.45%), Query Frame = 0


Query: 1   MFCEVELVRDVEVMAEKEKRDGLNFQRYIITCLLENLLKEKASKDHGYYLAVTSLKSVGK 60
           MF +V+L  DV + AE +   GL  QR I+  LLE   KEKA+KD GY +  T L+++G+
Sbjct: 1   MFIKVKLPWDVTIPAE-DMDTGLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GETKNESPCVSFPITFSCRTFLPFEGEILHGVVRHIFRRGLLLKCGPIKYVFLSVRKMPT 120
           G+ K ++  + FP+ F+   F  F+GEI+HGVV  + + G+ LK GP + ++LS  KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YHYVGGENPVFSSNKFATIGYDVVVRFSVLGVRWIEKRGCIKKEFVMLASLEGNNSLGP 180
           Y ++ GENP F +   + I     VRF VL   W E     +K+F+ LAS++G+N LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWRE----AEKDFMALASIDGDN-LGP 173

The following BLAST results are available for this feature:

BLAST of Sed0005210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877103.1	9.0e-93	89.47	DNA-directed RNA polymerase V subunit 7-like isoform X2 [Benincasa hispida]	[more]
XP_022924760.1	2.0e-92	89.58	DNA-directed RNA polymerase V subunit 7-like [Cucurbita moschata] >XP_023528651....	[more]
KAG7018763.1	7.6e-92	89.06	DNA-directed RNA polymerase subunit 7-like protein, partial [Cucurbita argyrospe...	[more]
XP_004134101.1	2.9e-91	88.42	DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >XP_004134102.1 DNA-di...	[more]
XP_008438585.1	2.9e-91	88.42	PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Cucumis melo] >XP_00843...	[more]

BLAST of Sed0005210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NML5	4.6e-39	41.71	DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=37...	[more]
A6QRA1	1.5e-37	43.65	DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7...	[more]
Q8LE42	1.6e-31	41.90	DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
P46279	1.6e-12	28.39	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	6.2e-12	27.10	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]

BLAST of Sed0005210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFY9	9.7e-93	89.58	DNA-directed RNA polymerase V subunit 7-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3AWE2	1.4e-91	88.42	DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7U0C3	1.4e-91	88.42	DNA-directed RNA polymerase V subunit 7-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0L5A3	1.4e-91	88.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G143540 PE=4 SV=1	[more]
A0A6J1IQI7	2.4e-91	88.54	DNA-directed RNA polymerase V subunit 7-like isoform X1 OS=Cucurbita maxima OX=3...	[more]

BLAST of Sed0005210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14520.1	3.2e-40	41.71	DNA-directed RNA polymerase II-related	[more]
AT4G14520.2	3.2e-40	41.71	DNA-directed RNA polymerase II-related	[more]
AT4G14520.3	3.2e-40	41.71	DNA-directed RNA polymerase II-related	[more]
AT4G14660.1	1.0e-38	43.65	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT3G22900.1	1.1e-32	41.90	RNA polymerase Rpb7-like, N-terminal domain	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..84 e-value: 1.5E-12 score: 49.6
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..81
None	No IPR available	GENE3D	2.40.50.140		coord: 85..179 e-value: 2.2E-12 score: 48.7
None	No IPR available	PANTHER	PTHR12709:SF6	DNA-DIRECTED RNA POLYMERASE SUBUNIT 7-LIKE PROTEIN	coord: 1..190
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..190
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 83..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005210.1	Sed0005210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding