Sed0005178 (gene) Chayote v1

Overview


Name	Sed0005178
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nascent polypeptide-associated complex subunit beta
Location	LG08: 34606938 .. 34610198 (-)
RNA-Seq Expression	Sed0005178
Synteny	Sed0005178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCCATATTCAATCTGTTCTCCTCGCATGGTTCCTCAATCTCGATTTCTTAGTGACGAAATTTTTTCAGATTCGTTAATCTCGATTTCTCGTTCTTGTAGCTAGGTTTTTCTATCATTTGCGATTATCTCGTAAGATTGCGTTTCTTGCTTTTTCTGCATTTGAATGTTTTTTAGCTTTATATTTGTTCGCAGCTGATTCTTCTATAATTAGGAACCCTTTTGGAAACTTAGCGACATTTTGATTGCTGTTTTTTGTTTTGGGTTGATTTCTGCTCAGAGCAGGGTCATTTCTTAGTATTGTTGTAAACATTCATGCTGGTTCAGTCTCATTTAGGTTGTTTTGTTGGCCCTTTTATTTGTAATTTAGTGAATGGTTGTGGTTAAAGATTAATGTTGCCTAGAAAGTTAGTAATATGGGGTGGTGCTGCCGTTTTGGTGAGGGGCTGCTAGTGTTCATAGCTTTTGGTTTTTTAGTTTTAACTATAATTTTATTGTTTGAAATATTCGTCTTGTTGTATTCGTATGGTTTGTGATTGATAGGATTTAATTTTTTTTTTAATTTTGATGTCTCGCAGATGGATCAGGAGAGGCTAAGGAAGATTGCAAGTGCGGTTCGTACCGGTGGAAAGGGTACCATGCGAAGGTAATTCTGTAATATCTTATTAGATACAAATTTGTGCTTGCCCATTCTCTAGGGTTTCTCTGTTTCTCACTGCCTCCTTTGTTCATCTCCTAGGGTTTGTGTTGCAGTTTTCATTTTCCATTTTCTATTTCTGATTGCTATTTTATTTTGGTTTATTTCTCTGCGCGGCCCTTAAGATCGCCTTCCTCAGTGTGAAATGGAAGCGTCTCGAGTCATAGCTGCGCTACAGCAAACACTTTTTTGGAGAATTTCGTTAGGGTTTTCCTTTTGGAATTCTCTCCATTTCCCAGTCCTTGTTCTTGAGGCAATTGTTTTCCGCCTTTGGATCTCCTACTTTTGGTTTTCTGAAATGCTAGCGATTTGGCTTTTCTGCTGTTTCGTTAGTTTAATTTCAGCTAATCGAAGTTTCAGATCTGTATGGATGATGTCTTTGTCTCTCTCTAAGGTGGGTTACATTTTGTGTTCTTTTTGTTCATTGAAGCTTGGATTGCTGTCCTTTATTGTTGAGGACAATGGGCTACCTGAAAATTGCTAATCTTTAATGTATCATACCTACCTTCATTCTTTGCCAAACAAGTTGAGAGATAGTAAGAACCGTCCAAGATTTCAGTTTTGTTGTATTAAGAATGTACACTTTTTAAGACATAATTATGTGTCATGCCTCTACTGAAACTCTAGCTTGTTGTTTTTCTTTGACCTTAAAAGTCTGACCTGGCTACACTTGAAGTGTAAGTATAAGTATTTACATCTTCTTTAAGGTTATGCAATAGCCAATGATGATGACACCATCTTGGTGACCTTATGATAGCTTGCACATGATAAATTCTTTCTTGTCATTTTTTTATACATCTATGAGTGTCTGAAACAACTTACCATTATCAGCTGACCCCCAAACATTTGATTGTCAATTAAAATGTTTTCGTTTCCCATAAAAAGAAGAAAAAGAAATCCGTAGGAAATTTGTCCGAGGTAGGTGACTATCATGGATTGAACATATCAGTCCTTAGTTCTCCCGACTAATAGGTCATTCCATGATGGTTATTCTTTCTTTTCAATCATATTCCTCTGTATTTGTTAAAAAATGTATAATTTCTCTGTTGTGAATTTTTTGTTATTTATTCATTGAAGACATAAATTTTTATTTCATTATAGATATTTATTTTGAATCAATTGCTCTTGATAATAGAAAGAAGAAGGCAGTTCACAAAACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATATAGTTATTCAATTCCTCAACCCTAAGGGTAAAATTTAATCGTCCATTATTCATTATAGTACACTTCATCCTTACTGTTTCACATTCTTGGATGGCTTATAACACATCTTTTTAACTTTTTTCTTGTCCAGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATGAAGAGTATGTATTTATGCTAAACCATGTTCTAAATCATGTTTGGTGGTGATTGTTTTCTTTCAATTGTTATAACATAATTCACATACTTGAGAACCATTGAAGGTAATCTTGGGGAGTAATAGTATTTCTTTGGGTGGTAGGATCATGTCTACAAAGAAATATTGTTCTTGTTCTCATCTAACCAGTTTAGTGCATTTGATTAGTTTTCATGATATCTATTTAGTTTCTTTTTTGTACCGAGAAATTGTCCATCATGCATATGATGATGCTTATGTTTAGAACACTTCCTGATTTAATAATAAATGCTTTTGCAAATGTTCAGAATTGCAGGACATCTTGCCTGGCATCATCAATCAATTGGGTAATTCATCTGTTGAGTTTGTTGTTTTATGGTCCGATTTCCCATTGGCTTAAACTTCAAAATAATGTTTTTTTTTTCTTTCCCAACTACTACCTCCAGGGCCAGATAACTTGGACAACTTGCGAAAATTGGCTGAGCAGTTTAAACAGCAAGCACCTGGAGCAGGTGTTGATGCAAAGAACGAACAAGAGGACGACGACGACGTTCCAGAACTCGTTGAGGGGGAGACTTTTGAAGCTCCGGCCGAGGAAATTCGTGTTTCTTAGGGAATATCCTCTTGAAAGGAGTGTTTTATGACGTTTTTATACTTGTGGAATTGCTTCAGACAAGTTCTTATGATTTCCTCCATAGTGAATCTTATCATAATATTTAACTTGCTCTCTTTATGATGAGGAGAAAACGGTATTTTCTGCGTTTGTTCAATCCCTCTGCCATACTCTTCAATCTTCCAAATGTCCTTGTAATTCTTAGTATACGCAGTTTGTGGGGCCAGCTTCCTCGCAGAGATTTTTGCTGTCCAGTCTGCTTGGCGGATCTTTAATTTTATGACGTTGAATTATAAATTAC

mRNA sequence

CTTTTCCATATTCAATCTGTTCTCCTCGCATGGTTCCTCAATCTCGATTTCTTAGTGACGAAATTTTTTCAGATTCGTTAATCTCGATTTCTCGTTCTTGTAGCTAGGTTTTTCTATCATTTGCGATTATCTCATGGATCAGGAGAGGCTAAGGAAGATTGCAAGTGCGGTTCGTACCGGTGGAAAGGGTACCATGCGAAGAAAGAAGAAGGCAGTTCACAAAACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATATAGTTATTCAATTCCTCAACCCTAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATGAAGAAATTGCAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGATAACTTGGACAACTTGCGAAAATTGGCTGAGCAGTTTAAACAGCAAGCACCTGGAGCAGGTGTTGATGCAAAGAACGAACAAGAGGACGACGACGACGTTCCAGAACTCGTTGAGGGGGAGACTTTTGAAGCTCCGGCCGAGGAAATTCGTGTTTCTTAGGGAATATCCTCTTGAAAGGAGTGTTTTATGACGTTTTTATACTTGTGGAATTGCTTCAGACAAGTTCTTATGATTTCCTCCATAGTGAATCTTATCATAATATTTAACTTGCTCTCTTTATGATGAGGAGAAAACGGTATTTTCTGCGTTTGTTCAATCCCTCTGCCATACTCTTCAATCTTCCAAATGTCCTTGTAATTCTTAGTATACGCAGTTTGTGGGGCCAGCTTCCTCGCAGAGATTTTTGCTGTCCAGTCTGCTTGGCGGATCTTTAATTTTATGACGTTGAATTATAAATTAC

Coding sequence (CDS)

ATGGATCAGGAGAGGCTAAGGAAGATTGCAAGTGCGGTTCGTACCGGTGGAAAGGGTACCATGCGAAGAAAGAAGAAGGCAGTTCACAAAACCACCACAACTGATGATAAAAGGCTTCAGAGCACCCTAAAGAGAATTGGGGTGAATGCCATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGACGATATAGTTATTCAATTCCTCAACCCTAAGGTTCAAGCATCTATTGCTGCAAACACCTGGGTTGTTAGTGGTTCTCCTCAAATGAAGAAATTGCAGGACATCTTGCCTGGCATCATCAATCAATTGGGGCCAGATAACTTGGACAACTTGCGAAAATTGGCTGAGCAGTTTAAACAGCAAGCACCTGGAGCAGGTGTTGATGCAAAGAACGAACAAGAGGACGACGACGACGTTCCAGAACTCGTTGAGGGGGAGACTTTTGAAGCTCCGGCCGAGGAAATTCGTGTTTCTTAG

Protein sequence

MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFKQQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS

Homology

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BLAST of Sed0005178 vs. NCBI nr
Match: XP_022948528.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >XP_022948529.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >XP_022998703.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima] >XP_022998704.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima] >XP_023522483.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo] >XP_023522484.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo] >XP_023525973.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo] >XP_023525974.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo] >KAG7037081.1 Basic transcription factor 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 6.0e-74
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ+KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           Q APGAG DAKN QE+DDDVPELV+GETFEAPAEE R S
Sbjct: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 159

[Close]

BLAST of Sed0005178 vs. NCBI nr
Match: KAG6607414.1 (hypothetical protein SDJN03_00756, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 6.0e-74
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 461 MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 520

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ+KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 521 KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 580

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           Q APGAG DAKN QE+DDDVPELV+GETFEAPAEE R S
Sbjct: 581 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 619

[Close]

BLAST of Sed0005178 vs. NCBI nr
Match: KAA0036053.1 (nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo var. makuwa] >TYJ98860.1 nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 63  MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 122

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 123 KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 182

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 183 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 221

[Close]

BLAST of Sed0005178 vs. NCBI nr
Match: XP_008438287.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Sed0005178 vs. NCBI nr
Match: XP_008438373.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo] >XP_008438455.1 PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo] >XP_038893518.1 nascent polypeptide-associated complex subunit beta-like [Benincasa hispida] >XP_038893519.1 nascent polypeptide-associated complex subunit beta-like [Benincasa hispida])

HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot
Match: Q9CAT7 (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.9e-63
Identity = 127/157 (80.89%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQAPGAG-VDAK-NEQEDDDDVPELVEGETFEAPAEE 156
           +QAPGAG V A   E++DDDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot
Match: Q9SMW7 (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.9e-61
Identity = 125/157 (79.62%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQAPGAG--VDAKNEQEDDDDVPELVEGETFEAPAEE 156
           +QA G G    A  ++EDDDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot
Match: Q6PC91 (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 84/147 (57.14%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-IVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  + K+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQA-PGAGVDAKNEQEDDDDVPELVE 146
            +Q        A++  E+DDDVP+LVE
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLVE 147

[Close]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot
Match: Q4KLF5 (Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-36
Identity = 86/157 (54.78%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-IVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQAPGAGVDAKNE-QEDDDDVPELVEGETFEAPAEE 156
            +Q   +      + +E+DDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot
Match: Q5M8V0 (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-36
Identity = 86/157 (54.78%), Postives = 116/157 (73.89%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+QE+L K+ + VR GGKGT RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-IVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  ++K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 KQQAPGAGVDAKNE-QEDDDDVPELVEGETFEAPAEE 156
            +Q   +      + +E+DDDVPELV G   EA   E
Sbjct: 121 PRQVLDSKASKPEDIEEEDDDVPELV-GNFDEASKNE 156

[Close]

BLAST of Sed0005178 vs. ExPASy TrEMBL
Match: A0A6J1KF12 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111493285 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ+KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           Q APGAG DAKN QE+DDDVPELV+GETFEAPAEE R S
Sbjct: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 159

[Close]

BLAST of Sed0005178 vs. ExPASy TrEMBL
Match: A0A6J1G9J3 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111452180 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.9e-74
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ+KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQIKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           Q APGAG DAKN QE+DDDVPELV+GETFEAPAEE R S
Sbjct: 121 QHAPGAGADAKNAQEEDDDVPELVDGETFEAPAEENRAS 159

[Close]

BLAST of Sed0005178 vs. ExPASy TrEMBL
Match: A0A1S3AX23 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 61  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 121 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 159

[Close]

BLAST of Sed0005178 vs. ExPASy TrEMBL
Match: A0A5A7SZH7 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00560 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 63  MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 122

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 123 KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 182

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 183 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 221

[Close]

BLAST of Sed0005178 vs. ExPASy TrEMBL
Match: A0A1S3AWM8 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103483414 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.9e-73
Identity = 150/159 (94.34%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 5   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 64

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF NPKVQASIAANTWVVSGSPQ KKLQDILPGIINQLGPDNLDNLRKLAEQFK
Sbjct: 65  KDDVVIQFNNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFK 124

Query: 121 QQAPGAGVDAKNEQEDDDDVPELVEGETFEAPAEEIRVS 160
           QQ PGAG DAKN QE+DDDVPELVEGETFEAPAEE R S
Sbjct: 125 QQVPGAGGDAKNAQEEDDDVPELVEGETFEAPAEENRSS 163

[Close]

BLAST of Sed0005178 vs. TAIR 10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC )

HSP 1 Score: 241.9 bits (616), Expect = 3.5e-64
Identity = 127/157 (80.89%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSG+PQ KKLQDILP II+QLGPDNLDNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 QQAPGAG-VDAK-NEQEDDDDVPELVEGETFEAPAEE 156
           +QAPGAG V A   E++DDDDVP+LV GETFE PA E
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Sed0005178 vs. TAIR 10
Match: AT1G17880.1 (basic transcription factor 3 )

HSP 1 Score: 234.6 bits (597), Expect = 5.6e-62
Identity = 125/157 (79.62%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MDQERLRKIASAVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M++E+L K+A+ VRTGGKGT+RRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDIVIQFLNPKVQASIAANTWVVSGSPQMKKLQDILPGIINQLGPDNLDNLRKLAEQFK 120
           KDD+VIQF+NPKVQASIAANTWVVSGSPQ KKLQDILP II+QLGPDN+DNL+KLAEQF+
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 QQAPGAG--VDAKNEQEDDDDVPELVEGETFEAPAEE 156
           +QA G G    A  ++EDDDDVPELV GETFE  AEE
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEE 156

The following BLAST results are available for this feature:

BLAST of Sed0005178 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948528.1	6.0e-74	93.71	nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >X...	[more]
KAG6607414.1	6.0e-74	93.71	hypothetical protein SDJN03_00756, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0036053.1	3.9e-73	94.34	nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis mel...	[more]
XP_008438287.1	3.9e-73	94.34	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [...	[more]
XP_008438373.1	3.9e-73	94.34	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [...	[more]

BLAST of Sed0005178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAT7	4.9e-63	80.89	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
Q9SMW7	7.9e-61	79.62	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
Q6PC91	1.8e-36	57.14	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]
Q4KLF5	3.0e-36	54.78	Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=...	[more]
Q5M8V0	3.0e-36	54.78	Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis OX=8364 GN=btf3l4 PE=2...	[more]

BLAST of Sed0005178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KF12	2.9e-74	93.71	Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1G9J3	2.9e-74	93.71	Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=366...	[more]
A0A1S3AX23	1.9e-73	94.34	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5A7SZH7	1.9e-73	94.34	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AWM8	1.9e-73	94.34	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]

BLAST of Sed0005178 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73230.1	3.5e-64	80.89	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	5.6e-62	79.62	basic transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 6.2E-21 score: 85.5
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 5.8E-19 score: 67.9
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 15.547274
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 48..104 e-value: 1.7E-24 score: 87.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..149
None	No IPR available	PANTHER	PTHR10351:SF58	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA	coord: 1..157
IPR039370	Transcription factor BTF3	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005178.1	Sed0005178.1	mRNA
Sed0005178.2	Sed0005178.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005854	nascent polypeptide-associated complex
cellular_component	GO:0042788	polysomal ribosome