Sed0005159 (gene) Chayote v1

Overview


Name	Sed0005159
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 22212455 .. 22214397 (-)
RNA-Seq Expression	Sed0005159
Synteny	Sed0005159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGTTTATAACCCGCTCTCTTATACCTCGAGTACCACTGGTCCGTCTCTCGAATGTGGCACCGGAGTTCAACCCGAGGGAGTATACTTTGAAATCAGTAGGCTTAACCAATTGTTCTACCCCTCTGGGCATCATGTAAACACTTTTGGCTACCTACTTTATTCATTATGTGGAGTTTTAATTATTCAAGTCCACAAAATATTTAAAACCCTGTTTTTAATATATATACATATATAAATACGTGAGTGTTTGGGTCAGTGTACTTTAACAATTTTTATCTGCATAATGTTTGATCTTACAACATTTTGATATCAAGAAAATTTGTAAGAAATTATTTGTTTTAGATAGGTGCCACCAATTCTACACCACAATCACATATTCGATCCTGAAAATTGATATTTTACTTTCATTTATTTGAGAGTAGTAATATATTTTATGTAGGATTTGTGGTCAAGTCGTTGCCTCTTAGTTACTAATGTCACATTTGACCATGAAGTTACTCCATGATAGCAATGTTAAGTAATGTGAAAAAGTACTAAATGGCATGCTGATGAACTTGGCAGCTATTGTTTTGGAATTCAAATAAGCAGTAGTTTGATCCCAATTGCATTCAGAATAGGGTCCCTCAATTATTAAATGGCATCCATACTTTGAAAGATTATTGCTTTATTACTTTTGTTAATCGTGGACCATTATAATATTTCTGCTTTGATGTCTTTGTCACGTGGTTGTGAGTGCCTACTTTGATTATTTTTTTCCCTAAGTTTTTTTTAGTGATCTTTAGTCGAAAAGTGACCGTTTGTATCATGACAGCATCCCTTCCATGTGTTAGTGACAAAATAGCCAAATTTGATTTTCAAAAAACAGAGATTTCATTGTTAAATACTTATTTTTCCAGCTAGAAGCTTGTTTCTAAAGAAATCAATTGTTTTTGACATATGCATTGTGGAGTTTGAAGGGACATACGGCAGTGCATGAGCAGTGGAGCTTTACTTTGAACGCCAAGAGGCTTTTTTTATGTTACCAATTATCTTTTCTTGACAATTAAGGAAGAAAGTAGGTGGGAAGCATTCTCAAGCGGCATAAATCGGTACTAGGTGAACAATTTGTTTTCTTTCCTTCTTTTCAAGTCAGGCCTGAAAATGTAAATCTGTTACGACCCATCCCAAAAATGGTTTGTATATTTCTTGAAATGAAAGGGATTATTAGGTCTGGATGGTAGAGACTCGGGGCTTTCAAGTTATGCTCACTTGGAGGTTCTAAATTCGAAATTTACCGAATAAATTAATTGTACTAATTCTTGTTGTCCCCCACAGTCTTAAGACAGGTGTAGATACCCTTGAATATGTAGTGGGGTCTAACTCCAGTTTGTAGTTATAAAAAAATCATAATAAGCTTGGATATTAGGTAAAGTGATTAAGAACGAATACCAATATTATATGTGTGATAAAACCAGGAAATTCTTGAGCACTCCTGCTTTGGATCTTCCAATAGAAGTTAAAATGTATTAATTAGTTGGCAAGCATGTGACTATAGCAGCCTTTGCCGTCAAATTCATTCCTTATTAATATTTTATGCAATCACATCTCAGCTATGCTTCCGAAGTCACTAACAATCACAACCCACATGGGATATGATTTATATTTAACTAATGAAATCTTGATTACTCTGGTTGTTGTTGTACTCTGTTTTCAGGCCTGATGATACTTCGAAAGTCCAATCCCAAAAGAAAGAAAAGAGGGCAAAAATGAAAGGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

mRNA sequence

ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

Coding sequence (CDS)

ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

Protein sequence

MGCRANAHKLFDKMQICFCIGIAAMVIVGVPLDSCEHFFDIKKMGFEREGTRCSMMTKACCGP

Homology

[Close]

BLAST of Sed0005159 vs. NCBI nr
Match: KGN55170.1 (hypothetical protein Csa_012741 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MGCRANAHKLFDKMQICFCIGIAAMVIVGVPL---------------DSCEHFFDIKKMG 60
          MG   NAH+LFDKMQ+ F  GI A V V +PL               +S +   DIK+MG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTKACCGP 64
          FEREGTRCSMMT+ CCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

[Close]

BLAST of Sed0005159 vs. ExPASy TrEMBL
Match: A0A0A0KZQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-11
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MGCRANAHKLFDKMQICFCIGIAAMVIVGVPL---------------DSCEHFFDIKKMG 60
          MG   NAH+LFDKMQ+ F  GI A V V +PL               +S +   DIK+MG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTKACCGP 64
          FEREGTRCSMMT+ CCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

The following BLAST results are available for this feature:

BLAST of Sed0005159 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55170.1	1.9e-10	52.56	hypothetical protein Csa_012741 [Cucumis sativus]	[more]

BLAST of Sed0005159 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZQ5	9.0e-11	52.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1	[more]

BLAST of Sed0005159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005159.1	Sed0005159.1	mRNA