Sed0005159 (gene) Chayote v1

Overview
NameSed0005159
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 22212455 .. 22214397 (-)
RNA-Seq ExpressionSed0005159
SyntenySed0005159
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGTTTATAACCCGCTCTCTTATACCTCGAGTACCACTGGTCCGTCTCTCGAATGTGGCACCGGAGTTCAACCCGAGGGAGTATACTTTGAAATCAGTAGGCTTAACCAATTGTTCTACCCCTCTGGGCATCATGTAAACACTTTTGGCTACCTACTTTATTCATTATGTGGAGTTTTAATTATTCAAGTCCACAAAATATTTAAAACCCTGTTTTTAATATATATACATATATAAATACGTGAGTGTTTGGGTCAGTGTACTTTAACAATTTTTATCTGCATAATGTTTGATCTTACAACATTTTGATATCAAGAAAATTTGTAAGAAATTATTTGTTTTAGATAGGTGCCACCAATTCTACACCACAATCACATATTCGATCCTGAAAATTGATATTTTACTTTCATTTATTTGAGAGTAGTAATATATTTTATGTAGGATTTGTGGTCAAGTCGTTGCCTCTTAGTTACTAATGTCACATTTGACCATGAAGTTACTCCATGATAGCAATGTTAAGTAATGTGAAAAAGTACTAAATGGCATGCTGATGAACTTGGCAGCTATTGTTTTGGAATTCAAATAAGCAGTAGTTTGATCCCAATTGCATTCAGAATAGGGTCCCTCAATTATTAAATGGCATCCATACTTTGAAAGATTATTGCTTTATTACTTTTGTTAATCGTGGACCATTATAATATTTCTGCTTTGATGTCTTTGTCACGTGGTTGTGAGTGCCTACTTTGATTATTTTTTTCCCTAAGTTTTTTTTAGTGATCTTTAGTCGAAAAGTGACCGTTTGTATCATGACAGCATCCCTTCCATGTGTTAGTGACAAAATAGCCAAATTTGATTTTCAAAAAACAGAGATTTCATTGTTAAATACTTATTTTTCCAGCTAGAAGCTTGTTTCTAAAGAAATCAATTGTTTTTGACATATGCATTGTGGAGTTTGAAGGGACATACGGCAGTGCATGAGCAGTGGAGCTTTACTTTGAACGCCAAGAGGCTTTTTTTATGTTACCAATTATCTTTTCTTGACAATTAAGGAAGAAAGTAGGTGGGAAGCATTCTCAAGCGGCATAAATCGGTACTAGGTGAACAATTTGTTTTCTTTCCTTCTTTTCAAGTCAGGCCTGAAAATGTAAATCTGTTACGACCCATCCCAAAAATGGTTTGTATATTTCTTGAAATGAAAGGGATTATTAGGTCTGGATGGTAGAGACTCGGGGCTTTCAAGTTATGCTCACTTGGAGGTTCTAAATTCGAAATTTACCGAATAAATTAATTGTACTAATTCTTGTTGTCCCCCACAGTCTTAAGACAGGTGTAGATACCCTTGAATATGTAGTGGGGTCTAACTCCAGTTTGTAGTTATAAAAAAATCATAATAAGCTTGGATATTAGGTAAAGTGATTAAGAACGAATACCAATATTATATGTGTGATAAAACCAGGAAATTCTTGAGCACTCCTGCTTTGGATCTTCCAATAGAAGTTAAAATGTATTAATTAGTTGGCAAGCATGTGACTATAGCAGCCTTTGCCGTCAAATTCATTCCTTATTAATATTTTATGCAATCACATCTCAGCTATGCTTCCGAAGTCACTAACAATCACAACCCACATGGGATATGATTTATATTTAACTAATGAAATCTTGATTACTCTGGTTGTTGTTGTACTCTGTTTTCAGGCCTGATGATACTTCGAAAGTCCAATCCCAAAAGAAAGAAAAGAGGGCAAAAATGAAAGGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

mRNA sequence

ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

Coding sequence (CDS)

ATGGGCTGTCGTGCGAATGCGCACAAACTGTTCGACAAAATGCAAATCTGTTTTTGCATCGGAATTGCTGCAATGGTAATTGTGGGAGTGCCTCTGGACTCATGTGAACACTTTTTTGATATAAAGAAGATGGGCTTTGAAAGAGAAGGCACACGTTGTTCCATGATGACGAAGGCTTGTTGTGGACCATAG

Protein sequence

MGCRANAHKLFDKMQICFCIGIAAMVIVGVPLDSCEHFFDIKKMGFEREGTRCSMMTKACCGP
Homology
[Close]
BLAST of Sed0005159 vs. NCBI nr
Match: KGN55170.1 (hypothetical protein Csa_012741 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 1  MGCRANAHKLFDKMQICFCIGIAAMVIVGVPL---------------DSCEHFFDIKKMG 60
          MG   NAH+LFDKMQ+ F  GI A V V +PL               +S +   DIK+MG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTKACCGP 64
          FEREGTRCSMMT+ CCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

[Close]
BLAST of Sed0005159 vs. ExPASy TrEMBL
Match: A0A0A0KZQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-11
Identity = 41/78 (52.56%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 1  MGCRANAHKLFDKMQICFCIGIAAMVIVGVPL---------------DSCEHFFDIKKMG 60
          MG   NAH+LFDKMQ+ F  GI A V V +PL               +S +   DIK+MG
Sbjct: 1  MGRLVNAHELFDKMQMGFGNGITAGVTVEMPLRNMLNYILRVHSQEKESGQERKDIKEMG 60

Query: 61 FEREGTRCSMMTKACCGP 64
          FEREGTRCSMMT+ CCGP
Sbjct: 61 FEREGTRCSMMTQTCCGP 78

The following BLAST results are available for this feature:
BLAST of Sed0005159 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55170.11.9e-1052.56hypothetical protein Csa_012741 [Cucumis sativus][more]
BLAST of Sed0005159 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0005159 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZQ59.0e-1152.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639090 PE=4 SV=1[more]
BLAST of Sed0005159 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005159.1Sed0005159.1mRNA