Sed0005155 (gene) Chayote v1

Overview


Name	Sed0005155
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Mixed-linked glucan synthase
Location	LG13: 23164449 .. 23165651 (+)
RNA-Seq Expression	Sed0005155
Synteny	Sed0005155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA

mRNA sequence

TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA

Coding sequence (CDS)

ATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAA

Protein sequence

MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI

Homology

[Close]

BLAST of Sed0005155 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]

BLAST of Sed0005155 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 63  MAAITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 122

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 123 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGTAAGRRRTVKGKKCQPLVDAI 174

[Close]

BLAST of Sed0005155 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MA+ITSTCSSFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 112

[Close]

BLAST of Sed0005155 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]

BLAST of Sed0005155 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 4.4e-47
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPR+RTSS SHGSP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDEANDVPLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

[Close]

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

[Close]

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

[Close]

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQ+G A GRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQEGTAGGRRRAGKGKK 104

[Close]

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A2R6R383 (Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MAAIT-STCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA T S+CSSFF++R+N +EPRVR SSPSHGSP CGK DGV  WLING  +AFF SL+R
Sbjct: 1   MAATTSSSCSSFFNLRANPVEPRVR-SSPSHGSPGCGKQDGVTMWLINGVASAFFASLDR 60

Query: 61  CSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVD 111
           CSCIRI+T EDDGD+AN++PLI NDGN R D R+ GRRR GKGKK  A ++
Sbjct: 61  CSCIRISTHEDDGDDANNLPLIFNDGNYRLDDRSGGRRRTGKGKKAAASIE 110

[Close]

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A7J0DXN0 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0088710 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.7e-33
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MAAIT-STCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA T S+CSS F++R+N +EPRVR SSPSHGSP CGK DGV  WLING  +AFF SL+R
Sbjct: 1   MAATTSSSCSSLFNLRANPVEPRVR-SSPSHGSPGCGKQDGVTMWLINGVASAFFASLDR 60

Query: 61  CSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVD 111
           CSCIRI+T EDDGD+AN++PLI NDGN R D R+ GRRR GKGKK  A ++
Sbjct: 61  CSCIRISTHEDDGDDANNLPLIFNDGNYRHDDRSGGRRRTGKGKKAAASIE 110

[Close]

BLAST of Sed0005155 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 16 SNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDD--GD 75
          S+S+     T+S +  + S  KLD  A+W+    ++AFF SLERCSC+ ++T++DD  G+
Sbjct: 4  SSSINSTASTAS-NLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGE 63

Query: 76 EANDVPL 81
          E+++ PL
Sbjct: 64 ESHNRPL 69

[Close]

BLAST of Sed0005155 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 19 MEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEAND 78
          M+  +  +S    + S  K+D  A+W+    ++AFF SLERC+C+ ++T+ DD D+ +D
Sbjct: 1  MDKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDD 59

The following BLAST results are available for this feature:

BLAST of Sed0005155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977101.1	6.1e-49	91.07	uncharacterized protein LOC111477268 [Cucurbita maxima]	[more]
KAG6591437.1	1.4e-48	90.18	hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024315.1	3.0e-48	89.29	hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0064464.1	4.0e-48	96.15	hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201...	[more]
XP_038897734.1	4.4e-47	95.19	uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0005155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0005155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIU9	3.0e-49	91.07	uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268...	[more]
A0A5D3D9D4	1.9e-48	96.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L2M3	1.6e-47	94.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1	[more]
A0A2R6R383	3.0e-33	68.47	Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4...	[more]
A0A7J0DXN0	8.7e-33	67.57	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0088710 PE=4 SV=1	[more]

BLAST of Sed0005155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10810.1	2.8e-07	40.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G24026.1	1.8e-06	35.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..99
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 4..104
None	No IPR available	PANTHER	PTHR34061:SF2	PROTEIN, PUTATIVE-RELATED	coord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005155.1	Sed0005155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity