Sed0005155 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA ATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAA MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI Homology
BLAST of Sed0005155 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima]) HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49 Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0
BLAST of Sed0005155 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48 Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0
BLAST of Sed0005155 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48 Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0
BLAST of Sed0005155 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa]) HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48 Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Sed0005155 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida]) HSP 1 Score: 198.0 bits (502), Expect = 4.4e-47 Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49 Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0
BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48 Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47 Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0
BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A2R6R383 (Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33 Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 0
BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A7J0DXN0 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0088710 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 8.7e-33 Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 0
BLAST of Sed0005155 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07 Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of Sed0005155 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06 Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|