Sed0005155 (gene) Chayote v1

Overview
NameSed0005155
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMixed-linked glucan synthase
LocationLG13: 23164449 .. 23165651 (+)
RNA-Seq ExpressionSed0005155
SyntenySed0005155
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA

mRNA sequence

TTTTTTTTCATTTAATTGGCTCCTGATTTTGAATTTGTCTTTGTAATTGTAGATGAATTTATTAACAAGCCCAAATTCACAATTGGCTCAACCATCTCGAGTTGGCCTAATAGTTGAGAGTACTTCATAGAACCAAAAGATTATGAATTCAATTTATGGTAGCCAGCTACCAAAAATATATTTTTTACAAGTTTTCTTGATTGCCAAATATTGTAAGGTCAGGAAAACTCGGCTGAAGACTTATAGATATCCAAAAAAGAAAGAAAAATCATGATTGGCTGTTTGCACGCTTTGTTAGCAACTTCTGTTTATGTTTTGTTTTTTTAATAAAGATCTTTGTTTTGAGATTAACTTCCACTGGCTTGTCGGTAATTTTAACAGTATCATGTTTCAAAATTTCAACTCTTAATTATTAACACAGGGTTGAAAGAAGATGCTCCTTTGGAAGTTATAAGCTGCTAGTTTGGAGCTTTCATAACTGTGTATGTTTCTCTCTCTGTTTCTGGCTCAGGTACAAACAAAAGCTTGAAATTCCATTTCCATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAATGAGCTCTGCTACATATGTTGTATAATAATCCATATCAAAAAGCTCATCTTTGGTAAGTTATGTGAAGGGAGCTTCTGAATCTGAGAAATTTACTGCTTTTTTGTTTTGTTTTGTGGAGATGAAATCAACCAAATTACTTCCTTATCGCCTTTTGAATTGGAGGTGAAGAATTCAAACCGATAACCTTTAAGCTATTAGGTCATATATCATGTCAAAATCAGCTTTTGTTAACATTGTGTCTGAACTATTGAATCTCAAATTATCATTTCAATAACAATCTAAATGTTGATCTTTCATTAAGAACTTTGATTTTAGGATGCCA

Coding sequence (CDS)

ATGGCTGCCATTACTTCCACCTGCAGCAGCTTCTTCTCCATCAGATCAAATTCTATGGAGCCAAGAGTCAGAACTTCTTCACCAAGCCATGGCTCCCCATCATGTGGGAAGCTTGATGGAGTGGCAACTTGGCTCATCAATGGCTTTGTGACAGCTTTCTTTGGATCGTTGGAACGATGCTCGTGTATCCGTATCGCTACCGCTGAGGACGACGGCGATGAGGCGAACGACGTCCCCTTGATCTCGAACGATGGAAATCTTCGACAGGACGGCCGTGCTGCAGGCCGGAGGAGGGCTGGGAAAGGCAAGAAATGTCAGGCTCTTGTAGATGCCATCTAA

Protein sequence

MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI
Homology
BLAST of Sed0005155 vs. NCBI nr
Match: XP_022977101.1 (uncharacterized protein LOC111477268 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 6.1e-49
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

BLAST of Sed0005155 vs. NCBI nr
Match: KAG6591437.1 (hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.0 bits (515), Expect = 1.4e-48
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 63  MAAITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 122

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 123 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGTAAGRRRTVKGKKCQPLVDAI 174

BLAST of Sed0005155 vs. NCBI nr
Match: KAG7024315.1 (hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.8 bits (512), Expect = 3.0e-48
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MA+ITSTCSSFFSIRS+SMEPRVRTSSP+H SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MASITSTCSSFFSIRSSSMEPRVRTSSPTHASPACGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 61  SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 112

BLAST of Sed0005155 vs. NCBI nr
Match: KAA0064464.1 (hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK20124.1 hypothetical protein E5676_scaffold134G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

BLAST of Sed0005155 vs. NCBI nr
Match: XP_038897734.1 (uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 4.4e-47
Identity = 99/104 (95.19%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPR+RTSS SHGSP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 27  MAAITSTCSSFFSIRSNSMEPRLRTSSSSHGSPACGKLDGVATWLINGFVTAFFGSLERC 86

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDEANDVPLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 87  SCIRIATAEDDGDEANDVPLIPNDGNLRQDGTAAGRRRAGKGKK 130

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A6J1IIU9 (uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRS+SMEPRVRTSSPSH SP+CGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 91  MAAITSTCSSFFSIRSSSMEPRVRTSSPSHASPACGKLDGVATWLINGFVTAFFGSLERC 150

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVDAI 113
           SCIRIATAEDDGDEAND PLI NDGNL+QDG AAGRRR  KGKKCQ LVDAI
Sbjct: 151 SCIRIATAEDDGDEANDAPLIPNDGNLQQDGAAAGRRRTVKGKKCQPLVDAI 202

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A5D3D9D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002500 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQDG AAGRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQDGTAAGRRRAGKGKK 104

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A0A0L2M3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 98/104 (94.23%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60
           MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC
Sbjct: 1   MAAITSTCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERC 60

Query: 61  SCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKK 105
           SCIRIATAEDDGDE ND+PLI NDGNLRQ+G A GRRRAGKGKK
Sbjct: 61  SCIRIATAEDDGDEGNDIPLIPNDGNLRQEGTAGGRRRAGKGKK 104

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A2R6R383 (Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 0

Query: 1   MAAIT-STCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA T S+CSSFF++R+N +EPRVR SSPSHGSP CGK DGV  WLING  +AFF SL+R
Sbjct: 1   MAATTSSSCSSFFNLRANPVEPRVR-SSPSHGSPGCGKQDGVTMWLINGVASAFFASLDR 60

Query: 61  CSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVD 111
           CSCIRI+T EDDGD+AN++PLI NDGN R D R+ GRRR GKGKK  A ++
Sbjct: 61  CSCIRISTHEDDGDDANNLPLIFNDGNYRLDDRSGGRRRTGKGKKAAASIE 110

BLAST of Sed0005155 vs. ExPASy TrEMBL
Match: A0A7J0DXN0 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0088710 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.7e-33
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 0

Query: 1   MAAIT-STCSSFFSIRSNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLER 60
           MAA T S+CSS F++R+N +EPRVR SSPSHGSP CGK DGV  WLING  +AFF SL+R
Sbjct: 1   MAATTSSSCSSLFNLRANPVEPRVR-SSPSHGSPGCGKQDGVTMWLINGVASAFFASLDR 60

Query: 61  CSCIRIATAEDDGDEANDVPLISNDGNLRQDGRAAGRRRAGKGKKCQALVD 111
           CSCIRI+T EDDGD+AN++PLI NDGN R D R+ GRRR GKGKK  A ++
Sbjct: 61  CSCIRISTHEDDGDDANNLPLIFNDGNYRHDDRSGGRRRTGKGKKAAASIE 110

BLAST of Sed0005155 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 16 SNSMEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDD--GD 75
          S+S+     T+S +  + S  KLD  A+W+    ++AFF SLERCSC+ ++T++DD  G+
Sbjct: 4  SSSINSTASTAS-NLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGE 63

Query: 76 EANDVPL 81
          E+++ PL
Sbjct: 64 ESHNRPL 69

BLAST of Sed0005155 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 21/59 (35.59%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 19 MEPRVRTSSPSHGSPSCGKLDGVATWLINGFVTAFFGSLERCSCIRIATAEDDGDEAND 78
          M+  +  +S    + S  K+D  A+W+    ++AFF SLERC+C+ ++T+ DD D+ +D
Sbjct: 1  MDKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDD 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022977101.16.1e-4991.07uncharacterized protein LOC111477268 [Cucurbita maxima][more]
KAG6591437.11.4e-4890.18hypothetical protein SDJN03_13783, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7024315.13.0e-4889.29hypothetical protein SDJN02_13129, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0064464.14.0e-4896.15hypothetical protein E6C27_scaffold255G001780 [Cucumis melo var. makuwa] >TYK201... [more]
XP_038897734.14.4e-4795.19uncharacterized protein LOC120085674 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IIU93.0e-4991.07uncharacterized protein LOC111477268 OS=Cucurbita maxima OX=3661 GN=LOC111477268... [more]
A0A5D3D9D41.9e-4896.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L2M31.6e-4794.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644660 PE=4 SV=1[more]
A0A2R6R3833.0e-3368.47Protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11731 PE=4... [more]
A0A7J0DXN08.7e-3367.57Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0088710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10810.12.8e-0740.30unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G24026.11.8e-0635.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..99
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 4..104
NoneNo IPR availablePANTHERPTHR34061:SF2PROTEIN, PUTATIVE-RELATEDcoord: 4..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005155.1Sed0005155.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity