Sed0005117 (gene) Chayote v1

Overview


Name	Sed0005117
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L20, chloroplastic
Location	LG14: 11107788 .. 11108141 (-)
RNA-Seq Expression	Sed0005117
Synteny	Sed0005117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGAATTAAACGAGCATATATAGCTCAGAGACGTAGAATAAAAATTTGTTTATTTGGATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAAATATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCAACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGAAATAATAAGGTAGACTCCAGTTATAGTAGATTCATACACAATCTGTACAAGAGGTAGTTGTTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGATTTTTCTTTATATGATTTCCAATGAGATCATAAAATAA

mRNA sequence

ATGACTAGAATTAAACGAGCATATATAGCTCAGAGACGTAGAATAAAAATTTGTTTATTTGGATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAAATATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCAACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGAAATAATAAGTTGTTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGATTTTTCTTTATATGATTTCCAATGAGATCATAAAATAA

Coding sequence (CDS)

ATGACTAGAATTAAACGAGCATATATAGCTCAGAGACGTAGAATAAAAATTTGTTTATTTGGATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAAATATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCAACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGAAATAATAAGTTGTTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGATTTTTCTTTATATGATTTCCAATGAGATCATAAAATAA

Protein sequence

MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNKLFLNRKILAQIAILNRIFLYMISNEIIK

Homology

[Close]

BLAST of Sed0005117 vs. NCBI nr
Match: YP_009752519.1 (ribosomal protein L20 [Trichosanthes tubiflora] >QIT04915.1 ribosomal protein L20 [Trichosanthes tubiflora])

HSP 1 Score: 153.7 bits (387), Expect = 8.6e-34
Identity = 90/117 (76.92%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR+NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRSNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. NCBI nr
Match: YP_009751676.1 (ribosomal protein L20 [Hodgsonia heteroclita] >QIT04409.1 ribosomal protein L20 [Hodgsonia heteroclita])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKISLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. NCBI nr
Match: YP_009752266.1 (ribosomal protein L20 [Trichosanthes baviensis] >YP_009753197.1 ribosomal protein L20 [Trichosanthes truncata] >YP_009753812.1 ribosomal protein L20 [Trichosanthes pilosa] >YP_009753897.1 ribosomal protein L20 [Trichosanthes lobata] >QJD26494.1 ribosomal protein L20 [Trichosanthes kirilowii var. japonica] >QJD26668.1 ribosomal protein L20 [Trichosanthes rosthornii] >QIT04240.1 ribosomal protein L20 [Trichosanthes baviensis] >QIT05676.1 ribosomal protein L20 [Trichosanthes pilosa] >QIT05845.1 ribosomal protein L20 [Trichosanthes lobata])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. NCBI nr
Match: YP_009560858.1 (ribosomal protein L20 [Trichosanthes kirilowii] >YP_009751929.1 ribosomal protein L20 [Cyclanthera pedata] >YP_009752435.1 ribosomal protein L20 [Trichosanthes tricuspidata] >YP_009753643.1 ribosomal protein L20 [Trichosanthes wallichiana] >YP_009753728.1 ribosomal protein L20 [Trichosanthes nervifolia] >YP_009945440.1 ribosomal protein L20 [Sechium edule] >QAB33211.1 ribosomal protein L20 [Trichosanthes kirilowii] >QIT04156.1 ribosomal protein L20 [Sechium edule] >QIT04662.1 ribosomal protein L20 [Trichosanthes wallichiana] >QIT04747.1 ribosomal protein L20 [Cyclanthera pedata] >QIT04831.1 ribosomal protein L20 [Trichosanthes tricuspidata])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. NCBI nr
Match: YP_009326012.1 (ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 [Citrullus mucosospermus] >YP_009431580.1 ribosomal protein L20 [Citrullus amarus] >APW82484.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >QZL38704.1 ribosomal protein L20 [Citrullus ecirrhosus] >APD52503.1 ribosomal protein L20 [Citrullus lanatus] >APW82569.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >APW82654.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 151.8 bits (382), Expect = 3.3e-33
Identity = 89/117 (76.07%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WI RINAVIR+NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-35
Identity = 88/117 (75.21%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNN----------------KLFLNRKILAQIAILNRIFLYMISNEIIK 102
           WI RINAVIR+N                +L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.9e-33
Identity = 82/117 (70.09%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRI+R YIA+RRR KI LF S+FRGAHSRLTR  TQQK+RAL SA+RDRGRQKRNF++L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAI NR  LYMISNEIIK
Sbjct: 61  WITRINAVIRENKVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-32
Identity = 82/117 (70.09%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSF+GA SRLTR ITQQKIRAL SA++DRGRQKR+F++L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFQGARSRLTRTITQQKIRALVSAHQDRGRQKRDFRRL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEI+K
Sbjct: 61  WITRINAVIRANKVYYSYSTLIHHLYKRQLLLNRKILAQIAILNRNCLYMISNEILK 117

[Close]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot
Match: A6MM59 (50S ribosomal protein L20, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-31
Identity = 79/117 (67.52%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRI+R YIA+RRR KI LF S+FRG+HSRLTR  TQQKIRAL SA+RDRG+QKR F++L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASTFRGSHSRLTRTTTQQKIRALVSAHRDRGKQKRYFRRL 60

Query: 61  WITRINAVIRNNKLF----------------LNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR+N++F                LNRKILAQIAI NR  LYMISNEIIK
Sbjct: 61  WITRINAVIRDNRVFYSYSRLIHDLYKKQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot
Match: B1NWH3 (50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-31
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRI+R YIA+RRR KI LF SSFRGAHSRLTR I QQKIRAL SA+RDR RQKRNF++L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASSFRGAHSRLTRTIIQQKIRALVSAHRDRDRQKRNFRRL 60

Query: 61  WITRINAVIR------------NN----KLFLNRKILAQIAILNRIFLYMISNEIIK 102
           W+TRINAVIR            NN    +L LNRKILAQIAILNR  LYMISN+I+K
Sbjct: 61  WVTRINAVIRESTVSYSYSRLINNLYKRQLLLNRKILAQIAILNRNCLYMISNDILK 117

[Close]

BLAST of Sed0005117 vs. ExPASy TrEMBL
Match: A0A6H0EST1 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes tubiflora OX=1144424 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.2e-34
Identity = 90/117 (76.92%), Postives = 93/117 (79.49%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR+NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRSNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy TrEMBL
Match: A0A6H0ES93 (50S ribosomal protein L20, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.4e-34
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKISLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy TrEMBL
Match: A0A6M3S4F6 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.3e-34
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy TrEMBL
Match: A0A6H0ERB9 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes tricuspidata OX=654837 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.3e-34
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. ExPASy TrEMBL
Match: A0A6H0EQD1 (50S ribosomal protein L20, chloroplastic OS=Trichosanthes baviensis OX=1054457 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.3e-34
Identity = 90/117 (76.92%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WITRINAVIRNNK----------------LFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVIR NK                L LNRKILAQIAILNR  LYMISNEIIK
Sbjct: 61  WITRINAVIRYNKIDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]

BLAST of Sed0005117 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-30
Identity = 74/117 (63.25%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQL 60
           MTRIKR YIA+RRR K+ LF SSFRGAHSRLTR +TQQ+IRAL SA+RDRG++KR+F++L
Sbjct: 1   MTRIKRGYIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRL 60

Query: 61  WITRINAVIR----------------NNKLFLNRKILAQIAILNRIFLYMISNEIIK 102
           WITRINAVI                   +L LNRKILAQIA+LNR  LY ISN+I K
Sbjct: 61  WITRINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

The following BLAST results are available for this feature:

BLAST of Sed0005117 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752519.1	8.6e-34	76.92	ribosomal protein L20 [Trichosanthes tubiflora] >QIT04915.1 ribosomal protein L2...	[more]
YP_009751676.1	1.1e-33	76.92	ribosomal protein L20 [Hodgsonia heteroclita] >QIT04409.1 ribosomal protein L20 ...	[more]
YP_009752266.1	1.9e-33	76.92	ribosomal protein L20 [Trichosanthes baviensis] >YP_009753197.1 ribosomal protei...	[more]
YP_009560858.1	1.9e-33	76.92	ribosomal protein L20 [Trichosanthes kirilowii] >YP_009751929.1 ribosomal protei...	[more]
YP_009326012.1	3.3e-33	76.07	ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 ...	[more]

BLAST of Sed0005117 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZJ4	1.2e-35	75.21	50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=...	[more]
Q09G23	9.9e-33	70.09	50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl...	[more]
Q09WZ4	3.7e-32	70.09	50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3...	[more]
A6MM59	1.4e-31	67.52	50S ribosomal protein L20, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl20...	[more]
B1NWH3	1.9e-31	69.23	50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 P...	[more]

BLAST of Sed0005117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EST1	4.2e-34	76.92	50S ribosomal protein L20, chloroplastic OS=Trichosanthes tubiflora OX=1144424 G...	[more]
A0A6H0ES93	5.4e-34	76.92	50S ribosomal protein L20, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=r...	[more]
A0A6M3S4F6	9.3e-34	76.92	50S ribosomal protein L20, chloroplastic OS=Trichosanthes kirilowii var. japonic...	[more]
A0A6H0ERB9	9.3e-34	76.92	50S ribosomal protein L20, chloroplastic OS=Trichosanthes tricuspidata OX=654837...	[more]
A0A6H0EQD1	9.3e-34	76.92	50S ribosomal protein L20, chloroplastic OS=Trichosanthes baviensis OX=1054457 G...	[more]

BLAST of Sed0005117 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00660.1	3.6e-30	63.25	ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 42..71 score: 54.85 coord: 12..41 score: 37.88
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..74 e-value: 4.3E-18 score: 65.4
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..90
IPR005813	Ribosomal protein L20	CDD	cd07026	Ribosomal_L20	coord: 6..97 e-value: 2.28074E-23 score: 84.0729
None	No IPR available	GENE3D	6.10.160.10		coord: 3..56 e-value: 7.6E-10 score: 40.7
None	No IPR available	PANTHER	PTHR10986:SF22	50S RIBOSOMAL PROTEIN L20	coord: 1..90
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 2..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005117.1	Sed0005117.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome