Sed0005106 (gene) Chayote v1

Overview


Name	Sed0005106
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S9
Location	LG01: 19981261 .. 19983911 (+)
RNA-Seq Expression	Sed0005106
Synteny	Sed0005106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATCCCTCCACTCTATGCAGTTTCAGAACTTCCTCCATTCTCAATAAACTACGAAAATGGCGACTTCTATATCATCTCTCGCATTTTCTCTCACATCTCTCTCGTTTTCTTCCCAACTATCTCAGAAGCTAAATGCCGTATCCTTTCCCCGTTCAAAATCTCTTGTAATTTCCGGCACCGATTCCCCACTCGTGGTATCTGCCTCCGCCGCTGCCGGACTGGAGACGGCGGAGCTGAGAAACTTCGTGAAATCGACGCTCCCCGGTGGCTTCGCTGCGCAACCGCTGATTGGCACTGGTCGCCGGAAATCCGCCGTTGCTCGCGTTGTCATCAAAGTAGGCACCGGCAAAGTTATCATCAATTACCGCGATGCTAAGGTCCTCATATATTTTTCCTTATATTCGATTAATTGCATTTAGTTTGATCCGTTTTGGTACTGGATGTTCTTTGGACGATTTAGGGGTTTTTGTTTCTTCTGCTCAATTCGATTAGGTCTCTTTGTTATGGTAATGCAATTTGTTATTTGGATTAAACTGAAGATTGCTATTACAGGACCGTGATTTTCTTATTCATTGTGCAAATGCTTGAACCAGGGTGTGTTTGGCCTCGTTTATGTAAAGGCCGGATTGGTTATAATAACTCAACCGATGTTTGCCCTATTATTTATTATAAATAGTTGTTACCTAAACTTGCGTACCCGTTTATCTAAATCTACGTGCCGGTTTATCTAAACCTTACATATATTATTTTTTTGTTACATAACCCGTCCTTCAAACACCGTTTATCATAATTCTTGTTATAATAATTTGTCCCTAAAAAACTATTTATAATAACCCACCGTTTATCGTAATCTTCCGTCTATCATAACCAAATTGTTGCTCCAAACACACCAGAGATTGAAGTGATCATTATGTTGAATTGCGATTTTGGAATGAACTTGAGCATAACATTTTAACCAATATGGGTGTTTCATTTTTTATTTTGTGGAGAGTTAAAAATGAGCATTTACACCTAAAAAAACAGTTACAGTTTTGCAATCTTTTTACAAAATCCACATTTAAACAAGTTATTAGCTGAACCCCTCTACAAAAACTCACATCCAAAAGAATTATTGGCTTCAACTCCTCAACAACAATCCAGATCCAAATGAGCTATTAGTACAACCAAAAACCCCAATTTCTAATCACTCAAAATAACTCTTCATTCTTCGTCTCATATGATGAACTTAGATTAGATTTCATTGCTTGGTGCCAAATGCGGAGGGACTGTGGAAGAAATGGTTTCTTCCATCACGAGTTGGGATCAGGACTGTATCTATCTGTTGCGTTTATTTAGAGTTTTGAGCTTCAACTGAAGTGGTTTTAAATGCCAAAATACATGTCTATTATGAATTTAGGAGGATTGAGAACTTCCCTGTTTTTTCTGAGTGTGGGAATGAAAATGTGCTTTTGTTCCTCCATTTCCATTTCATGTGGAAATCTTTAACATCTGATGACTTTAAATCACATTGCAAATCCTTTATTTTTCAGTTTTCATTAGCTCTCTTCATATCAATTGAAAAGGCGCTTCCAGAGGAGGCACCGTAATCTCAAGTCTTGTAGTCTTTAGTTATACTTATAACTTTTACTATACCTACATCTGTTCTTTAGTATGTTAAGATTAACATCATAGATTGGTCTAGTCATCAAGAGGGCTTTAAGGAATTAAGAGGTTATGGATTCAAACCGTGGTGACTATCTATCTTAAAATTTGTTTCGTATAGTTTTCTTGGCAACCAGGTTGTAAGGTCAGATGGTTGTTCTGTGAAAATAGTCCAAGTGCACATAAGCTGATCCATATACTCGCGAATATCACAAAAATAAGTGTTATGATGCTGACTTCTCTCTATAAAAAACTAAATTTAGTGATCAATTGTGTTTCATTTCTTGTTAGAATGCCATTTTCTCTTATATGTTTATTGGGTTTCCTGGTATTGAGCTTCTTGTTGTTAATTTAGGACAGCTTGTTATTTCAACCAGTTCGTTTTATATGAGAATATTTGAAGTTGGGAGTGCAGTAGAATTTTACTCATCTCTGATTGGAATACACAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGCGGTGGCCTCTCTGGCCAGGCTCAGGCAATCTCCCTCGGCATCGCTCGTGCGCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCCAGAGTTGTGGAGAGAAAGAAAGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCTAAGCGTTGAGGTTCCTTTTCTTGTCAATTTTCCTCTTGCATTGTTTTCCATAGCCTCCTTATTCTTGTCAATCCTGTACTTCTTTTCTTTTTTAATGTAGTGTTATCTTAAATATTTCTTCATATGAAGTCTAAGCAGGGGCGAGGATGTGTATTAAAAGGCAACCCATAGTTCATGTGATCTGGCTTTAGAATCTTCATTTTTGTTATGATTTAGTCCTTGTTAATCTTCTTGAACTTGGGGTTATATACATATACATATACATTGGAG

mRNA sequence

CCCATCCCTCCACTCTATGCAGTTTCAGAACTTCCTCCATTCTCAATAAACTACGAAAATGGCGACTTCTATATCATCTCTCGCATTTTCTCTCACATCTCTCTCGTTTTCTTCCCAACTATCTCAGAAGCTAAATGCCGTATCCTTTCCCCGTTCAAAATCTCTTGTAATTTCCGGCACCGATTCCCCACTCGTGGTATCTGCCTCCGCCGCTGCCGGACTGGAGACGGCGGAGCTGAGAAACTTCGTGAAATCGACGCTCCCCGGTGGCTTCGCTGCGCAACCGCTGATTGGCACTGGTCGCCGGAAATCCGCCGTTGCTCGCGTTGTCATCAAAGTAGGCACCGGCAAAGTTATCATCAATTACCGCGATGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGCGGTGGCCTCTCTGGCCAGGCTCAGGCAATCTCCCTCGGCATCGCTCGTGCGCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCCAGAGTTGTGGAGAGAAAGAAAGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCTAAGCGTTGAGGTTCCTTTTCTTGTCAATTTTCCTCTTGCATTGTTTTCCATAGCCTCCTTATTCTTGTCAATCCTGTACTTCTTTTCTTTTTTAATGTAGTGTTATCTTAAATATTTCTTCATATGAAGTCTAAGCAGGGGCGAGGATGTGTATTAAAAGGCAACCCATAGTTCATGTGATCTGGCTTTAGAATCTTCATTTTTGTTATGATTTAGTCCTTGTTAATCTTCTTGAACTTGGGGTTATATACATATACATATACATTGGAG

Coding sequence (CDS)

ATGGCGACTTCTATATCATCTCTCGCATTTTCTCTCACATCTCTCTCGTTTTCTTCCCAACTATCTCAGAAGCTAAATGCCGTATCCTTTCCCCGTTCAAAATCTCTTGTAATTTCCGGCACCGATTCCCCACTCGTGGTATCTGCCTCCGCCGCTGCCGGACTGGAGACGGCGGAGCTGAGAAACTTCGTGAAATCGACGCTCCCCGGTGGCTTCGCTGCGCAACCGCTGATTGGCACTGGTCGCCGGAAATCCGCCGTTGCTCGCGTTGTCATCAAAGTAGGCACCGGCAAAGTTATCATCAATTACCGCGATGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGACGTATTCGTTAAAGCCGAAGGCGGTGGCCTCTCTGGCCAGGCTCAGGCAATCTCCCTCGGCATCGCTCGTGCGCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCCAGAGTTGTGGAGAGAAAGAAAGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCTAAGCGTTGA

Protein sequence

MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISGTDSPLVVSASAAAGLETAELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR

Homology

[Close]

BLAST of Sed0005106 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISGTDS--PLVVSASAAAGLETA 60
           MATS+SSLAFSL+SLSFSSQ+S K NA+SFPRSKSL IS   S  PLVVSASAAAG+ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LR+FVKS+LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 184/204 (90.20%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISG--TDSPLVVSASAAAGLETA 60
           MA+SISSLAFSL+SLSFSSQ+SQK N +SFPRSKSLVIS     SPLVVSASAA G+ETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELR+FVKS LPGGFAAQ LIGTGRRKSA+ARVVI+ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. NCBI nr
Match: XP_008466625.1 (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 30S ribosomal protein S9 [Cucumis melo var. makuwa] >TYJ97914.1 30S ribosomal protein S9 [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 181/204 (88.73%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVI--SGTDSPLVVSASAAAGLETA 60
           MATSISSLAFSL+SLSFSSQ+S K  A+SFPRSKSL+I  S + SPL+VSASAAA +ETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS+LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.6 bits (836), Expect = 1.5e-85
Identity = 180/204 (88.24%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVIS--GTDSPLVVSASAAAGLETA 60
           MATS+SSLAFSL+SLSFSSQLSQ  NA+SFPRSKSLVIS   ++SPLVVSASA + +ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKS LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325.5 bits (833), Expect = 3.3e-85
Identity = 179/204 (87.75%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVIS--GTDSPLVVSASAAAGLETA 60
           MATS+SSLAFSL+SLSFSSQ+SQ  N++SFPRSKSLVIS   ++SPLVVSASA + +ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKS LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-73
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 4   SISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISGTDSPLVVSASAAAGL-------E 63
           SI++LA SL+SLSFSSQ+SQ+ N +SFPR+ S+      S    S S  A +       E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLW 123
             EL+ +VKS LPGGFAAQ +IGTGRRK A+ARVV++ GTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 203
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 4.5e-69
Identity = 146/208 (70.19%), Postives = 166/208 (79.81%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVIS--GTDSPLVVSASAAAG---- 60
           MA SISSL  S  SLSF+S L+ K   +   R+K   +S      PLV++A++A      
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  LETAELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNP 120
            ETA+L  FVKS LPGGFAAQ +IGTGRRK A+ARVV++ GTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 203
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 78  IGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 137
           +GTGRRKSAVARV +  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 138 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 197
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 198 QFSKR 203
           Q+SKR
Sbjct: 133 QYSKR 137

[Close]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 82/125 (65.60%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 78  IGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 137
           +GTGRRKSAVARV +  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 138 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 197
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 198 QFSKR 203
           QFSKR
Sbjct: 133 QFSKR 137

[Close]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-34
Identity = 75/124 (60.48%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 79  GTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVK 138
           GTGRRK+AVARV +  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 139 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 198
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 199 FSKR 203
           +SKR
Sbjct: 135 YSKR 138

[Close]

BLAST of Sed0005106 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.7e-88
Identity = 184/204 (90.20%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISG--TDSPLVVSASAAAGLETA 60
           MA+SISSLAFSL+SLSFSSQ+SQK N +SFPRSKSLVIS     SPLVVSASAA G+ETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELR+FVKS LPGGFAAQ LIGTGRRKSA+ARVVI+ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 181/204 (88.73%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVI--SGTDSPLVVSASAAAGLETA 60
           MATSISSLAFSL+SLSFSSQ+S K  A+SFPRSKSL+I  S + SPL+VSASAAA +ETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS+LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 181/204 (88.73%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVI--SGTDSPLVVSASAAAGLETA 60
           MATSISSLAFSL+SLSFSSQ+S K  A+SFPRSKSL+I  S + SPL+VSASAAA +ETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS+LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.6e-85
Identity = 179/204 (87.75%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVIS--GTDSPLVVSASAAAGLETA 60
           MATS+SSLAFSL+SLSFSSQ+SQ  N++SFPRSKSLVIS   ++SPLVVSASA + +ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKS LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.6e-85
Identity = 179/204 (87.75%), Postives = 192/204 (94.12%), Query Frame = 0


Query: 1   MATSISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVI--SGTDSPLVVSASAAAGLETA 60
           MATS+SSLAFSL+SLSFSSQ+SQ  NA+SFPRSKSLVI  S ++SPLVVSASA + +ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKS LPGGFAAQ LIGTGRRKSAVARVV++ GTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 203
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Sed0005106 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-74
Identity = 152/206 (73.79%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 4   SISSLAFSLTSLSFSSQLSQKLNAVSFPRSKSLVISGTDSPLVVSASAAAGL-------E 63
           SI++LA SL+SLSFSSQ+SQ+ N +SFPR+ S+      S    S S  A +       E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSTLPGGFAAQPLIGTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLW 123
             EL+ +VKS LPGGFAAQ +IGTGRRK A+ARVV++ GTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 203
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of Sed0005106 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-17
Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 79  GTGRRKSAVARVVIKVGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVK 138
           GTGRRK ++ARV I+ G GK  +N ++   Y          ++ PL        +D+   
Sbjct: 308 GTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRAALLR-PLAETKTLGRWDIKCT 367

Query: 139 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 198
            +GGG +GQ  AI LGI+RAL     D R+ L+  G LTRDSRVVERKK G  KARK+ Q
Sbjct: 368 VKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKPGKAKARKSFQ 427

Query: 199 FSKR 203
           + KR
Sbjct: 428 WVKR 430

The following BLAST results are available for this feature:

BLAST of Sed0005106 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903352.1	1.2e-87	90.20	30S ribosomal protein S9, chloroplastic [Benincasa hispida]	[more]
XP_022143016.1	1.6e-87	90.20	30S ribosomal protein S9, chloroplastic [Momordica charantia]	[more]
XP_008466625.1	3.0e-86	88.73	PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo] >KAA0051696.1 ...	[more]
XP_023523256.1	1.5e-85	88.24	30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022940950.1	3.3e-85	87.75	30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r...	[more]

BLAST of Sed0005106 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ27	2.3e-73	73.79	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ...	[more]
P82278	4.5e-69	70.19	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE...	[more]
Q8DMK7	1.9e-35	62.40	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
Q9MUV1	2.5e-35	65.60	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE...	[more]
B2ITM7	4.7e-34	60.48	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O...	[more]

BLAST of Sed0005106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY0	7.7e-88	90.20	30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7UBW5	1.4e-86	88.73	30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRR0	1.4e-86	88.73	30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ...	[more]
A0A6J1FS60	1.6e-85	87.75	30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J3K2	4.6e-85	87.75	30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]

BLAST of Sed0005106 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74970.1	1.6e-74	73.79	ribosomal protein S9	[more]
AT3G49080.1	9.1e-17	44.35	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 81..202 e-value: 1.5E-41 score: 141.7
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 58..202
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 68..202 e-value: 6.3E-49 score: 167.6
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 58..202
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 141..159
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 72..202 score: 32.202816
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 77..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005106.1	Sed0005106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome