Sed0005093 (gene) Chayote v1

Overview


Name	Sed0005093
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG01: 23826376 .. 23828513 (-)
RNA-Seq Expression	Sed0005093
Synteny	Sed0005093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAATTTGAGGTGAACAATCTCCACCACGGAATTGGAAGATATGGATATTCCACAGGGGCCAATGAAATGAGAGAGGGAAGCCACATTTATCCAATGAAAATCAAGCTTTAGATTTCCCAATCTGTTGGTTCCAACTGCTTTTAGTCTCCTTCTTCTTCTTCTTCCCACTCTCCATCTCAACCTCTCATTCCCATTGCTCTTCAATGGCTTCCAACACCTTGATGAGCTGCGGCATCGCCGCCACCGCCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCTCCGCCGCCCTCCCCTTTCCCGGTGTCGCCGCCAATGCCTCCTCCCGCTTCTCGATGTCTGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCTTATCTCGACGGCTCTGCCCCCGGGTATTGAAAATTTCTAGTTTTACTTGTTTTGGTTCTCTTGGGTTTTTGTTGGAATTAGACATCTAATGTGTTTGGTTGGTTATGTTGGACAGTGATTTTGGCTTTGACCCACTTCGGCTGGGAGAAGTGCCAGAGAATCTGGAGAGATTCAAGGAGTCTGAGCTTATCCATTGCAGATGGGCCATGCTTGCTGTTGTAAGTTCACCAATTCTGAGAAGATGGGGCAGTTCTTTCACAACGGGTGATGGGTTTTTCATGCTCTTTGTTGTGTGTTTTTCAGCCAGGGATTTTGGTACCAGAGGCATTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCATTCCAGGAGGCCAAGCTACCTACTTGGGACAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTTCTTGCAATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAGGACTCGGAGAAGAAGAAGTACCCGGGAGGCGCTTTCGACCCATTGGGCTACTCGAAAGACCCTGTCAAGTTGAAGGAATACAAAGTCAAAGAGGTCAAAAATGGTGAGGACTCTCATTTCTTCACACTTGTTTTTATCTCTGCTTAGATTCAATGACATTTATAGAAGATCTTGGCTGGAGTGCTTTTGGAAAAGAGTTGAAACACTCCATTAAGAAAGTACTTAAAAGTCTCCCAACGGGTGGTGTAGTGGTTGAAGACTTGGGTTTTGAGAGGACTCCTTCGATGTCTCTGGTGTCAGGTCAAGGCATGGGCGTGTTTACCCTTGTTTAAAAAAAAAAGGAAGTACTTAAAAACTTTGTTTATCTATTTAGTCATTAATTTCCTATAGATTTTCTTAACACGTCAAACTGTTTGTAGGGTAAATAATCAAAATATGCGTAAACAGACTTAGTAGAATAGTTTGAACCAAACATTATTATATATCACGTGTTGCATCTCAAGACTAATAAGGTATATGAGATGTCATATATATCTTAAATGTGTAAGATTTACTCACCTTTTCAATATGAGATCCTCAACATGTCTCTTCGAGATGCTGTCCTTTTAAGTTCATCATTGTTGAATCGGATCTCAATTTTCTTTTATTTGATCGAATACTATTTGAGTTTGATAGGTTCCGGTAACAATTTAGGTACACAATGTTTCATCTCAAAAAAGTTATGAGGATGAGTAAATCACCCATCTAATAAATATTTTATTGAAGGCTTTCTCACTTTTCGAACGTAGAAAATGGAAAACACTTACACTTAAATTACTCGTGGTTTGTAGGTCGGTTGGCATTGTTGGCTTTTGTTGGAATCTGTGTGCAACAATCTGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGACATCATCATTCCCCCATCGTTTTCGCCTTGAATTTTGCTCTAAATCATACTCTCATTGTAATTAAACTTCTCTGTGTCTGAATTTGAACTCCATTGTTGCCCTCTCTTTGTGGCTTTCATTGTGCTATGTATCTCGATTATTCACCTTCATTTTAGTGCATGAAGTTATCATTGGAGGAAAAACGAATCATCATTCAGTTTAAAGTTTCATTATTTGCTTTATCTTAATGTTTATCTTAATGGTGAGGAAACAAAATTGTCTCACATGGCTAAGACAAGAGAAAGATTTTGTGTGTATAAGGGGGATAGCAC

mRNA sequence

TTGAAATTTGAGGTGAACAATCTCCACCACGGAATTGGAAGATATGGATATTCCACAGGGGCCAATGAAATGAGAGAGGGAAGCCACATTTATCCAATGAAAATCAAGCTTTAGATTTCCCAATCTGTTGGTTCCAACTGCTTTTAGTCTCCTTCTTCTTCTTCTTCCCACTCTCCATCTCAACCTCTCATTCCCATTGCTCTTCAATGGCTTCCAACACCTTGATGAGCTGCGGCATCGCCGCCACCGCCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCTCCGCCGCCCTCCCCTTTCCCGGTGTCGCCGCCAATGCCTCCTCCCGCTTCTCGATGTCTGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCTTATCTCGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCACTTCGGCTGGGAGAAGTGCCAGAGAATCTGGAGAGATTCAAGGAGTCTGAGCTTATCCATTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCATTCCAGGAGGCCAAGCTACCTACTTGGGACAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTTCTTGCAATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAGGACTCGGAGAAGAAGAAGTACCCGGGAGGCGCTTTCGACCCATTGGGCTACTCGAAAGACCCTGTCAAGTTGAAGGAATACAAAGTCAAAGAGGTCAAAAATGGTCGGTTGGCATTGTTGGCTTTTGTTGGAATCTGTGTGCAACAATCTGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGACATCATCATTCCCCCATCGTTTTCGCCTTGAATTTTGCTCTAAATCATACTCTCATTGTAATTAAACTTCTCTGTGTCTGAATTTGAACTCCATTGTTGCCCTCTCTTTGTGGCTTTCATTGTGCTATGTATCTCGATTATTCACCTTCATTTTAGTGCATGAAGTTATCATTGGAGGAAAAACGAATCATCATTCAGTTTAAAGTTTCATTATTTGCTTTATCTTAATGTTTATCTTAATGGTGAGGAAACAAAATTGTCTCACATGGCTAAGACAAGAGAAAGATTTTGTGTGTATAAGGGGGATAGCAC

Coding sequence (CDS)

ATGGCTTCCAACACCTTGATGAGCTGCGGCATCGCCGCCACCGCCGCCTTCCCCTCCGTCCTCTCCTCCTCCAAGTCTAAATTCGCCTCCGCCGCCCTCCCCTTTCCCGGTGTCGCCGCCAATGCCTCCTCCCGCTTCTCGATGTCTGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCTTATCTCGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCACTTCGGCTGGGAGAAGTGCCAGAGAATCTGGAGAGATTCAAGGAGTCTGAGCTTATCCATTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCATTCCAGGAGGCCAAGCTACCTACTTGGGACAGCCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTTCTTGCAATTGCCTTTGTAGAGCACCAACGCAGCATGGAGAAGGACTCGGAGAAGAAGAAGTACCCGGGAGGCGCTTTCGACCCATTGGGCTACTCGAAAGACCCTGTCAAGTTGAAGGAATACAAAGTCAAAGAGGTCAAAAATGGTCGGTTGGCATTGTTGGCTTTTGTTGGAATCTGTGTGCAACAATCTGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGCGACATCATCATTCCCCCATCGTTTTCGCCTTGA

Protein sequence

MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPPSFSP

Homology

[Close]

BLAST of Sed0005093 vs. NCBI nr
Match: XP_022939932.1 (chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_022993029.1 chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita maxima] >KAG6578757.1 Chlorophyll a-b binding protein 6A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 474.9 bits (1221), Expect = 4.1e-130
Identity = 233/248 (93.95%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA+  +P  GVA NASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFAT-GVPISGVAVNASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDPVKLKEYKVKE+KNGRLALLAFVGICVQQ+AYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP S SP
Sbjct: 241 IIPRSISP 246

[Close]

BLAST of Sed0005093 vs. NCBI nr
Match: XP_038891246.1 (chlorophyll a-b binding protein 6A, chloroplastic [Benincasa hispida])

HSP 1 Score: 473.4 bits (1217), Expect = 1.2e-129
Identity = 234/248 (94.35%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GVA NASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP S SP
Sbjct: 241 IIPRSISP 246

[Close]

BLAST of Sed0005093 vs. NCBI nr
Match: XP_022133484.1 (chlorophyll a-b binding protein 6A, chloroplastic [Momordica charantia])

HSP 1 Score: 473.0 bits (1216), Expect = 1.6e-129
Identity = 233/248 (93.95%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GV ANASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVGANASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP + SP
Sbjct: 241 IIPRNISP 246

[Close]

BLAST of Sed0005093 vs. NCBI nr
Match: XP_023549541.1 (chlorophyll a-b binding protein 6A, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.6 bits (1215), Expect = 2.0e-129
Identity = 232/247 (93.93%), Postives = 238/247 (96.36%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA+  +P  GVA NASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFAT-GVPISGVAVNASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDPVKLKEYKVKE+KNGRLALLAFVGICVQQ+AYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFS 248
           IIP S S
Sbjct: 241 IIPRSIS 245

[Close]

BLAST of Sed0005093 vs. NCBI nr
Match: XP_008453995.1 (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA0048040.1 chlorophyll a-b binding protein 6A [Cucumis melo var. makuwa])

HSP 1 Score: 471.9 bits (1213), Expect = 3.5e-129
Identity = 232/248 (93.55%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GVA NASSRFSMS+EWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSSEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP + SP
Sbjct: 241 IIPRTISP 246

[Close]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot
Match: P12360 (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.4e-118
Identity = 211/248 (85.08%), Postives = 219/248 (88.31%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI A    PS LSS+KSKFA AA+P    A N  SRFSMSA+WMPGQPRP 
Sbjct: 1   MASNTLMSCGIPAVC--PSFLSSTKSKFA-AAMPVYVGATNFMSRFSMSADWMPGQPRPS 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFD L LGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAAIPGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG
Sbjct: 121 EWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP K +E KVKE+KNGRLALLA VG CVQQSAY GTGPLENLATHLADPWHNNIGD+
Sbjct: 181 YSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDV 240

Query: 241 IIPPSFSP 249
           IIP    P
Sbjct: 241 IIPKGIFP 245

[Close]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.4e-117
Identity = 206/243 (84.77%), Postives = 217/243 (89.30%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASN+LMSCGIA  A +PS+LSSSKSKF SA +P P   A    R  M+A WMPG+PRP 
Sbjct: 1   MASNSLMSCGIA--AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPA 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KL+E KVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 239

Query: 241 IIP 244
           +IP
Sbjct: 241 VIP 239

[Close]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 6.5e-102
Identity = 180/242 (74.38%), Postives = 200/242 (82.64%), Query Frame = 0


Query: 2   ASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPPY 61
           +S+ L SC   +    PS+L+ S S+   + LPF    A  S R +MSAEW PGQPRP +
Sbjct: 3   SSSGLRSC---SAVGVPSLLAPS-SRSGRSGLPFCAY-ATTSGRVTMSAEWFPGQPRPAH 62

Query: 62  LDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 121
           LDGS+PGDFGFDPL L  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQE
Sbjct: 63  LDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQE 122

Query: 122 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGY 181
           WAA+P GQATYLG PVPWG LPTIL IEFLAIAF E QR+MEKD EKKKYPGGAFDPLG+
Sbjct: 123 WAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGF 182

Query: 182 SKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDII 241
           SKDP K +E K+KE+KNGRLA+LAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 183 SKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 242 IP 244
           IP
Sbjct: 243 IP 239

[Close]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-37
Identity = 104/268 (38.81%), Postives = 140/268 (52.24%), Query Frame = 0


Query: 19  SVLSSSKSKFASAALPFPGVAAN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPL 78
           S +SS+ S+F +A   F    A+   A +  S    W PG   P YLDGS  GD+GFDP 
Sbjct: 20  SDISSNSSRF-TARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPF 79

Query: 79  RLGEVPE-------------------------------------------NLERFKESEL 138
            LG+  E                                            L+RF+E EL
Sbjct: 80  GLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECEL 139

Query: 139 IHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 198
           IH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L 
Sbjct: 140 IHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLV 199

Query: 199 IAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEVKNGRLALLAFVGICV 240
           I ++E QR+ E DSEK+ YPGG  FDPLG + DPVK  + ++ E+K+ RLA++ F+G  V
Sbjct: 200 IGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAV 259

[Close]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.3e-37
Identity = 93/232 (40.09%), Postives = 124/232 (53.45%), Query Frame = 0


Query: 52  WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE----------------------------- 111
           W PG   P +LDGS  GD+GFDP  LG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 112 --------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGG 171
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 172 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPVK 231
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E DSEK+ YPGG  FDPLG + DP K
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 232 LKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGD 240
             + ++ E+K+ RLA++AF+G  VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Sed0005093 vs. ExPASy TrEMBL
Match: A0A6J1JZ33 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489171 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 233/248 (93.95%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA+  +P  GVA NASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFAT-GVPISGVAVNASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDPVKLKEYKVKE+KNGRLALLAFVGICVQQ+AYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP S SP
Sbjct: 241 IIPRSISP 246

[Close]

BLAST of Sed0005093 vs. ExPASy TrEMBL
Match: A0A6J1FI72 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445650 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.0e-130
Identity = 233/248 (93.95%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA+  +P  GVA NASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFAT-GVPISGVAVNASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD+EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDTEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDPVKLKEYKVKE+KNGRLALLAFVGICVQQ+AYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPVKLKEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP S SP
Sbjct: 241 IIPRSISP 246

[Close]

BLAST of Sed0005093 vs. ExPASy TrEMBL
Match: A0A6J1BW39 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006054 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.6e-130
Identity = 233/248 (93.95%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GV ANASSRFSMSAEWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVGANASSRFSMSAEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP + SP
Sbjct: 241 IIPRNISP 246

[Close]

BLAST of Sed0005093 vs. ExPASy TrEMBL
Match: A0A5A7TXV7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001080 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 232/248 (93.55%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GVA NASSRFSMS+EWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSSEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP + SP
Sbjct: 241 IIPRTISP 246

[Close]

BLAST of Sed0005093 vs. ExPASy TrEMBL
Match: A0A1S3BYE0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494548 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 232/248 (93.55%), Postives = 237/248 (95.56%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASNTLMSCGI AT AFPSVLSSSKSKFA AA+P  GVA NASSRFSMS+EWMPGQPRPP
Sbjct: 1   MASNTLMSCGI-ATTAFPSVLSSSKSKFA-AAVPISGVAVNASSRFSMSSEWMPGQPRPP 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KLKEYKVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 240

Query: 241 IIPPSFSP 249
           IIP + SP
Sbjct: 241 IIPRTISP 246

[Close]

BLAST of Sed0005093 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 422.9 bits (1086), Expect = 1.7e-118
Identity = 206/243 (84.77%), Postives = 217/243 (89.30%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASN+LMSCGIA  A +PS+LSSSKSKF SA +P P   A    R  M+A WMPG+PRP 
Sbjct: 1   MASNSLMSCGIA--AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPA 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
           YSKDP KL+E KVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 YSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 239

Query: 241 IIP 244
           +IP
Sbjct: 241 VIP 239

[Close]

BLAST of Sed0005093 vs. TAIR 10
Match: AT3G54890.2 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 341.7 bits (875), Expect = 5.1e-94
Identity = 175/243 (72.02%), Postives = 185/243 (76.13%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASN+LMSCGIA  A +PS+LSSSKSKF SA +P P   A    R  M+A WMPG+PRP 
Sbjct: 1   MASNSLMSCGIA--AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPA 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAF                         
Sbjct: 121 EWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF------------------------- 180

Query: 181 YSKDPVKLKEYKVKEVKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNIGDI 240
                    E KVKE+KNGRLALLAFVG CVQQSAYPGTGPLENLATHLADPWHNNIGDI
Sbjct: 181 ---------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 205

Query: 241 IIP 244
           +IP
Sbjct: 241 VIP 205

[Close]

BLAST of Sed0005093 vs. TAIR 10
Match: AT3G54890.4 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 332.4 bits (851), Expect = 3.1e-91
Identity = 164/200 (82.00%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASN+LMSCGIA  A +PS+LSSSKSKF SA +P P   A    R  M+A WMPG+PRP 
Sbjct: 1   MASNSLMSCGIA--AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPA 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLG 180
           EWAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLG
Sbjct: 121 EWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLG 180

Query: 181 YSKDPVKLKEYKVKEVKNGR 201
           YSKDP KL+E KVKE+KNG+
Sbjct: 181 YSKDPKKLEELKVKEIKNGK 196

[Close]

BLAST of Sed0005093 vs. TAIR 10
Match: AT3G54890.3 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 245.0 bits (624), Expect = 6.5e-65
Identity = 122/152 (80.26%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1   MASNTLMSCGIAATAAFPSVLSSSKSKFASAALPFPGVAANASSRFSMSAEWMPGQPRPP 60
           MASN+LMSCGIA  A +PS+LSSSKSKF SA +P P   A    R  M+A WMPG+PRP 
Sbjct: 1   MASNSLMSCGIA--AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPA 60

Query: 61  YLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 120
           YLDGSAPGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQ
Sbjct: 61  YLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQ 120

Query: 121 EWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 153
           EWAA+PGGQATYLG PVPWGTLPTIL IEFLA
Sbjct: 121 EWAALPGGQATYLGNPVPWGTLPTILAIEFLA 148

[Close]

BLAST of Sed0005093 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-38
Identity = 104/268 (38.81%), Postives = 140/268 (52.24%), Query Frame = 0


Query: 19  SVLSSSKSKFASAALPFPGVAAN---ASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPL 78
           S +SS+ S+F +A   F    A+   A +  S    W PG   P YLDGS  GD+GFDP 
Sbjct: 20  SDISSNSSRF-TARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPF 79

Query: 79  RLGEVPE-------------------------------------------NLERFKESEL 138
            LG+  E                                            L+RF+E EL
Sbjct: 80  GLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECEL 139

Query: 139 IHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 198
           IH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L 
Sbjct: 140 IHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLV 199

Query: 199 IAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPVKLKEYKVKEVKNGRLALLAFVGICV 240
           I ++E QR+ E DSEK+ YPGG  FDPLG + DPVK  + ++ E+K+ RLA++ F+G  V
Sbjct: 200 IGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAV 259

The following BLAST results are available for this feature:

BLAST of Sed0005093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939932.1	4.1e-130	93.95	chlorophyll a-b binding protein 6A, chloroplastic-like [Cucurbita moschata] >XP_...	[more]
XP_038891246.1	1.2e-129	94.35	chlorophyll a-b binding protein 6A, chloroplastic [Benincasa hispida]	[more]
XP_022133484.1	1.6e-129	93.95	chlorophyll a-b binding protein 6A, chloroplastic [Momordica charantia]	[more]
XP_023549541.1	2.0e-129	93.93	chlorophyll a-b binding protein 6A, chloroplastic-like isoform X1 [Cucurbita pep...	[more]
XP_008453995.1	3.5e-129	93.55	PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Cucumis melo] >KAA...	[more]

BLAST of Sed0005093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12360	8.4e-118	85.08	Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q01667	2.4e-117	84.77	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SDM1	6.5e-102	74.38	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]
Q9XF88	1.5e-37	38.81	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q07473	4.3e-37	40.09	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Sed0005093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ33	2.0e-130	93.95	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FI72	2.0e-130	93.95	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BW39	7.6e-130	93.95	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5A7TXV7	1.7e-129	93.55	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BYE0	1.7e-129	93.55	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Sed0005093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54890.1	1.7e-118	84.77	photosystem I light harvesting complex gene 1	[more]
AT3G54890.2	5.1e-94	72.02	photosystem I light harvesting complex gene 1	[more]
AT3G54890.4	3.1e-91	82.00	photosystem I light harvesting complex gene 1	[more]
AT3G54890.3	6.5e-65	80.26	photosystem I light harvesting complex gene 1	[more]
AT3G08940.2	1.0e-38	38.81	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..213 e-value: 3.8E-45 score: 154.3
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 53..239 e-value: 8.6E-78 score: 262.4
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 22..239
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 41..242
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 22..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005093.1	Sed0005093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding