Sed0005053 (gene) Chayote v1

Overview
NameSed0005053
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG02: 48631446 .. 48631857 (-)
RNA-Seq ExpressionSed0005053
SyntenySed0005053
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCAAAAACCACCAATTCTTCAATAATCTTCTTCATCTCAAACTCCAAAAACACAACAAAATAGTACTAAATGAGTCCTGAGAAACCCAATTTGAGAGCTTTCGATCTCGCCACCGCCACTACCACCTCCGCCACAGGTGGAACGCAACCGAAAAAATCGTCGGAAAAGAACGTCAACAACTCGAAAGGCGACGCCGCCAGCTCCGATATGGGAAAGGCTTTGGCGCAGAGAGCAGTTTATGGATCTCAACCGTGGCGAAAAGGAAGAAGAAGAATCCTCATCCATGGCGCCCGGCTGCTTCCTAGCAGGCTGAGCAAAGTTTCTTTAGCTGATAATTCCTCAGCTTCTAATTAATTTTTTTTTATGTGTATAAAGTTGGTAAATATTGTTTGTCACTAAGTAATGTGA

mRNA sequence

ATTTTCAAAAACCACCAATTCTTCAATAATCTTCTTCATCTCAAACTCCAAAAACACAACAAAATAGTACTAAATGAGTCCTGAGAAACCCAATTTGAGAGCTTTCGATCTCGCCACCGCCACTACCACCTCCGCCACAGGTGGAACGCAACCGAAAAAATCGTCGGAAAAGAACGTCAACAACTCGAAAGGCGACGCCGCCAGCTCCGATATGGGAAAGGCTTTGGCGCAGAGAGCAGTTTATGGATCTCAACCGTGGCGAAAAGGAAGAAGAAGAATCCTCATCCATGGCGCCCGGCTGCTTCCTAGCAGGCTGAGCAAAGTTTCTTTAGCTGATAATTCCTCAGCTTCTAATTAATTTTTTTTTATGTGTATAAAGTTGGTAAATATTGTTTGTCACTAAGTAATGTGA

Coding sequence (CDS)

ATGAGTCCTGAGAAACCCAATTTGAGAGCTTTCGATCTCGCCACCGCCACTACCACCTCCGCCACAGGTGGAACGCAACCGAAAAAATCGTCGGAAAAGAACGTCAACAACTCGAAAGGCGACGCCGCCAGCTCCGATATGGGAAAGGCTTTGGCGCAGAGAGCAGTTTATGGATCTCAACCGTGGCGAAAAGGAAGAAGAAGAATCCTCATCCATGGCGCCCGGCTGCTTCCTAGCAGGCTGAGCAAAGTTTCTTTAGCTGATAATTCCTCAGCTTCTAATTAA

Protein sequence

MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQPWRKGRRRILIHGARLLPSRLSKVSLADNSSASN
Homology
BLAST of Sed0005053 vs. NCBI nr
Match: KAG6597562.1 (hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 53/94 (56.38%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          MS E+P+ R FD A     +   G QP K  +   N S   AASS++GKALA RAVYG+Q
Sbjct: 1  MSSERPDSRGFDPAITMPATGVTGNQPTKPEK---NPSSKAAASSNVGKALAHRAVYGAQ 60

Query: 61 PWRKGRRRILIHGARLLPSRLSKVSLADNSSASN 95
              GRRR  +HG RLLPSRLSKVSLADNSS S+
Sbjct: 61 KRWTGRRRNPVHGVRLLPSRLSKVSLADNSSPSD 91

BLAST of Sed0005053 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_011148 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 6.8e-09
Identity = 56/106 (52.83%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 2   SPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNN------SKGDAASSDMGKALAQRA 61
           +P      AFD A     + TGG QP   +EKN N+      +   AAS+++GKALA+RA
Sbjct: 6   NPNNSRSSAFDPA-----ATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 65

Query: 62  VYGSQPWRKGRRR---ILIHGA-RLLPSRLSKVSLAD---NSSASN 95
           VYGSQ  R GRRR   I  HGA RLLPSRLSKVSLAD   NSS S+
Sbjct: 66  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of Sed0005053 vs. NCBI nr
Match: KAA0049530.1 (hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK16208.1 hypothetical protein E5676_scaffold209G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 2  SPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQP 61
          +P      AFD A     S TGG QP + +  +   +   AAS++MGKALA+RAVYG+Q 
Sbjct: 6  NPNNSRSSAFDPA-----STTGGIQPAEKNPNSKAATAATAASNNMGKALAERAVYGTQQ 65

Query: 62 WRKGRRR---ILIHGA-RLLPSRLSKVSLADN 90
           R GRRR   I  HGA RLLPS LS+VSLAD+
Sbjct: 66 RRTGRRRRNLIHEHGAIRLLPSTLSRVSLADH 92

BLAST of Sed0005053 vs. NCBI nr
Match: KAG2726969.1 (hypothetical protein I3760_01G138000 [Carya illinoinensis])

HSP 1 Score: 63.9 bits (154), Expect = 8.3e-07
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          M+ EK N    DL  A T+S    T  KK   K        AA+S++GKALAQRA+YGS 
Sbjct: 1  MASEKANANGSDL-DARTSSNQATTIDKKPDTKG-------AANSNLGKALAQRALYGSH 60

Query: 61 PWRKGRRRILIHGARLLPSRLSKVSLADNSS 92
            R G R+I   GARLLPSRLSKVSL ++S+
Sbjct: 61 NRRVGGRKITNSGARLLPSRLSKVSLGEDSA 83

BLAST of Sed0005053 vs. NCBI nr
Match: KAG6668024.1 (hypothetical protein CIPAW_01G142300 [Carya illinoinensis])

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          M+ EK N    DL  A T+S    T  KK   K         A+S++GKALAQRA+YGS 
Sbjct: 1  MASEKANANGSDL-DARTSSNQATTIDKKPDTKG-------TANSNLGKALAQRALYGSH 60

Query: 61 PWRKGRRRILIHGARLLPSRLSKVSLADNSS 92
            R G R++   GARLLPSRLSKVSL ++S+
Sbjct: 61 NRRVGGRKVTNSGARLLPSRLSKVSLGEDSA 83

BLAST of Sed0005053 vs. ExPASy TrEMBL
Match: A0A0A0L5C0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 56/106 (52.83%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 2   SPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNN------SKGDAASSDMGKALAQRA 61
           +P      AFD A     + TGG QP   +EKN N+      +   AAS+++GKALA+RA
Sbjct: 6   NPNNSRSSAFDPA-----ATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 65

Query: 62  VYGSQPWRKGRRR---ILIHGA-RLLPSRLSKVSLAD---NSSASN 95
           VYGSQ  R GRRR   I  HGA RLLPSRLSKVSLAD   NSS S+
Sbjct: 66  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

BLAST of Sed0005053 vs. ExPASy TrEMBL
Match: A0A5A7U2I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001370 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 2  SPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQP 61
          +P      AFD A     S TGG QP + +  +   +   AAS++MGKALA+RAVYG+Q 
Sbjct: 6  NPNNSRSSAFDPA-----STTGGIQPAEKNPNSKAATAATAASNNMGKALAERAVYGTQQ 65

Query: 62 WRKGRRR---ILIHGA-RLLPSRLSKVSLADN 90
           R GRRR   I  HGA RLLPS LS+VSLAD+
Sbjct: 66 RRTGRRRRNLIHEHGAIRLLPSTLSRVSLADH 92

BLAST of Sed0005053 vs. ExPASy TrEMBL
Match: A0A5C7IRA7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000217 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          M+ EK N R  +     +TS+    QP         N+KG A++S++GKALA+RA+ GSQ
Sbjct: 6  MASEKGNARDLE----ASTSSNQVIQP---------NTKGAASNSNVGKALARRALSGSQ 65

Query: 61 PWRKGRRRILIHGARLLPSRLSKVSLADNSS 92
            R   R++   GAR+LPSRLSKVSLA+  S
Sbjct: 66 NRRSHGRKVANSGARMLPSRLSKVSLAEEDS 83

BLAST of Sed0005053 vs. ExPASy TrEMBL
Match: A0A7J7CXR7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01650 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.2e-04
Identity = 37/91 (40.66%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          M+ E+      D +T++        +P      N+           +GKALAQRA+YGSQ
Sbjct: 1  MASEQAKTGKLDASTSSNQEIPADKEPNTKGTTNIT----------LGKALAQRALYGSQ 60

Query: 61 PWRKGR--RRILIHGARLLPSRLSKVSLADN 90
          P R+    R++   GA LLPSRLSKVSLADN
Sbjct: 61 PPRRRAKGRKVANTGAGLLPSRLSKVSLADN 81

BLAST of Sed0005053 vs. ExPASy TrEMBL
Match: A0A5N5LPM7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012785 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.1e-04
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 1  MSPEKPNLRAFDLATATTTSATGGTQPKKSSEKNVNNSKGDAASSDMGKALAQRAVYGSQ 60
          MS EK N+   + ++++       T P   S  N N+           K LAQRA++GS+
Sbjct: 1  MSSEKANVGDLNASSSSKQVVLPETMPSIKSTSNFNSE----------KVLAQRALFGSR 60

Query: 61 PWRKGRRRILIHGARLLPSRLSKVSLADNSS 92
            R   R+I  +GA LLPSRLSKVSLAD+SS
Sbjct: 61 NHRTKGRKIKNNGANLLPSRLSKVSLADDSS 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6597562.17.8e-1356.38hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57150.16.8e-0952.83hypothetical protein Csa_011148 [Cucumis sativus][more]
KAA0049530.12.2e-0751.09hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK162... [more]
KAG2726969.18.3e-0750.55hypothetical protein I3760_01G138000 [Carya illinoinensis][more]
KAG6668024.13.2e-0648.35hypothetical protein CIPAW_01G142300 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5C03.3e-0952.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1[more]
A0A5A7U2I21.1e-0751.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5C7IRA72.2e-0545.05Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000217 PE=4 SV=1[more]
A0A7J7CXR74.2e-0440.66Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01650 ... [more]
A0A5N5LPM77.1e-0441.76Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012785 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0005053.1Sed0005053.1mRNA