Sed0005049 (gene) Chayote v1

Overview


Name	Sed0005049
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Germin-like protein
Location	LG05: 26782181 .. 26782948 (-)
RNA-Seq Expression	Sed0005049
Synteny	Sed0005049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAACCATCTTCAATTTTCCTTCTCTTGTTTGTGTTATTGTCTTGTCTTGGAATCTCAGTTGCAGATTCTAATAACATCTTTGATTCTTGTCCAACTGCCACTAACAGAACTGACTTCATCAATGGCTTCCCTTGCAAAAACCCCACCATTGTTTCGACTTCTGACTTCAACTCAGCAAAGTTAACTGGACCGGTCGATACCGATGATCGCTTCAGCTCATTGCTGAAGATTGTCACGGCTGCAGAATTCCCTGGTTTGAATACATTGGGGCTTTCTATTTCTCGAACCGATTTGGGCACTGACGCCATCGTTTCTCCTCACTCGCACCCTAGAGCCACTGAGATGTTCTTTGTGAACCAAGGTATGTATTGGATTGAGTTGTGATTTATCATAGTATTAGAGTAGGTTGTTCTTATGATCTATCGTCTCTTTGGACAATTATGGTTCACAGGCATCGTTTTAGCTGGATTCCTCGACACGAAAAACCGACTGTTTCAGAGTTTTCTAAAACCAGGCGACGTGATTGTATTTCCGAAGGGGTTGTTGCACTTCTGTCTGAATTCTGGTTATGAGACTGCTACCATTTTCTCTGTGTATAACAGTCAGAATCCAGGAGTTGTGAACGTCAATGGCGCCATGTTCGAGCCTGCGGATACAAGTCATTTCTTAGACAAGTTCCTTGAGAAGTTAAAAGCTGTATCGTCATTATCAGATCTCAAATTCAATCCAAATGTAACTCTTCCCAGATACGTAAGTTTGTAA

mRNA sequence

ATGAAGAAACCATCTTCAATTTTCCTTCTCTTGTTTGTGTTATTGTCTTGTCTTGGAATCTCAGTTGCAGATTCTAATAACATCTTTGATTCTTGTCCAACTGCCACTAACAGAACTGACTTCATCAATGGCTTCCCTTGCAAAAACCCCACCATTGTTTCGACTTCTGACTTCAACTCAGCAAAGTTAACTGGACCGGTCGATACCGATGATCGCTTCAGCTCATTGCTGAAGATTGTCACGGCTGCAGAATTCCCTGGTTTGAATACATTGGGGCTTTCTATTTCTCGAACCGATTTGGGCACTGACGCCATCGTTTCTCCTCACTCGCACCCTAGAGCCACTGAGATGTTCTTTGTGAACCAAGGCATCGTTTTAGCTGGATTCCTCGACACGAAAAACCGACTGTTTCAGAGTTTTCTAAAACCAGGCGACGTGATTGTATTTCCGAAGGGGTTGTTGCACTTCTGTCTGAATTCTGGTTATGAGACTGCTACCATTTTCTCTGTGTATAACAGTCAGAATCCAGGAGTTGTGAACGTCAATGGCGCCATGTTCGAGCCTGCGGATACAAGTCATTTCTTAGACAAGTTCCTTGAGAAGTTAAAAGCTGTATCGTCATTATCAGATCTCAAATTCAATCCAAATGTAACTCTTCCCAGATACGTAAGTTTGTAA

Coding sequence (CDS)

ATGAAGAAACCATCTTCAATTTTCCTTCTCTTGTTTGTGTTATTGTCTTGTCTTGGAATCTCAGTTGCAGATTCTAATAACATCTTTGATTCTTGTCCAACTGCCACTAACAGAACTGACTTCATCAATGGCTTCCCTTGCAAAAACCCCACCATTGTTTCGACTTCTGACTTCAACTCAGCAAAGTTAACTGGACCGGTCGATACCGATGATCGCTTCAGCTCATTGCTGAAGATTGTCACGGCTGCAGAATTCCCTGGTTTGAATACATTGGGGCTTTCTATTTCTCGAACCGATTTGGGCACTGACGCCATCGTTTCTCCTCACTCGCACCCTAGAGCCACTGAGATGTTCTTTGTGAACCAAGGCATCGTTTTAGCTGGATTCCTCGACACGAAAAACCGACTGTTTCAGAGTTTTCTAAAACCAGGCGACGTGATTGTATTTCCGAAGGGGTTGTTGCACTTCTGTCTGAATTCTGGTTATGAGACTGCTACCATTTTCTCTGTGTATAACAGTCAGAATCCAGGAGTTGTGAACGTCAATGGCGCCATGTTCGAGCCTGCGGATACAAGTCATTTCTTAGACAAGTTCCTTGAGAAGTTAAAAGCTGTATCGTCATTATCAGATCTCAAATTCAATCCAAATGTAACTCTTCCCAGATACGTAAGTTTGTAA

Protein sequence

MKKPSSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNSAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL

Homology

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BLAST of Sed0005049 vs. NCBI nr
Match: KAG6606852.1 (Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036559.1 Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 198/226 (87.61%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL V  SCLGISVADS+N+FDSCPTAT+R DFINGFPCKNPTIV T DF 
Sbjct: 1   MNKPLSSLIFLLVVFFSCLGISVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFT 60

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAIVSPHSHPRATEMFF
Sbjct: 61  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFF 120

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 121 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMFEPAD+SHF+DKFL+KLKA+SSL DLKFNPNVTLPRY+SL
Sbjct: 181 NVNGAMFEPADSSHFIDKFLDKLKALSSLPDLKFNPNVTLPRYISL 226

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BLAST of Sed0005049 vs. NCBI nr
Match: XP_023522282.1 (germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.0 bits (1042), Expect = 2.1e-109
Identity = 197/226 (87.17%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL VL SCLGISVADS+N+FDSCPTAT+R DFINGFPCKNPTIV T DF 
Sbjct: 15  MNKPSSSLIFLLVVLFSCLGISVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFT 74

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAI+SPHSHPRATEMFF
Sbjct: 75  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIISPHSHPRATEMFF 134

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 135 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 194

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMFEPAD+SHF+DKFL+KLKA+SSL +LKFNPNVTLPRY+SL
Sbjct: 195 NVNGAMFEPADSSHFIDKFLDKLKALSSLPNLKFNPNVTLPRYISL 240

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BLAST of Sed0005049 vs. NCBI nr
Match: XP_022948659.1 (germin-like protein subfamily 3 member 4 [Cucurbita moschata] >XP_022948660.1 germin-like protein subfamily 3 member 4 [Cucurbita moschata])

HSP 1 Score: 403.3 bits (1035), Expect = 1.4e-108
Identity = 196/226 (86.73%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL V  SCLGISVADS+N+FDSCPTAT+R DFINGFPCKNPTIV T DF 
Sbjct: 1   MNKPSSSLIFLLVVFFSCLGISVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFT 60

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAIVSPHSHPRATEMFF
Sbjct: 61  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFF 120

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 121 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMF+PAD+SHF+DKFL+KLKA+SSL +LKFNPNVTLPRY+SL
Sbjct: 181 NVNGAMFKPADSSHFIDKFLDKLKALSSLPNLKFNPNVTLPRYISL 226

[Close]

BLAST of Sed0005049 vs. NCBI nr
Match: XP_022998490.1 (germin-like protein subfamily 3 member 4 [Cucurbita maxima])

HSP 1 Score: 401.0 bits (1029), Expect = 6.9e-108
Identity = 193/226 (85.40%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL V  SCLGI+VADS+N+FDSCPTAT+R DF+NGFPCKNPT+V T DF 
Sbjct: 1   MNKPSSSLIFLLLVFFSCLGIAVADSHNVFDSCPTATDRIDFVNGFPCKNPTVVRTDDFT 60

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAIVSPHSHPRATEMFF
Sbjct: 61  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFF 120

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 121 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMFEPAD+SHF+D FL+KLKA+SSL +LKFNPNVTLPRY+SL
Sbjct: 181 NVNGAMFEPADSSHFIDMFLDKLKALSSLPNLKFNPNVTLPRYISL 226

[Close]

BLAST of Sed0005049 vs. NCBI nr
Match: XP_022153439.1 (germin-like protein subfamily 3 member 4 [Momordica charantia])

HSP 1 Score: 391.3 bits (1004), Expect = 5.4e-105
Identity = 192/228 (84.21%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MKKPSS---IFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSD 60
           MKKPSS   IFLLLFVL SCLGISVADSNN+FD+CPTATN+++FINGFPCKNPTIV+TSD
Sbjct: 1   MKKPSSSSLIFLLLFVLFSCLGISVADSNNVFDTCPTATNKSEFINGFPCKNPTIVTTSD 60

Query: 61  FNSAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEM 120
           FNSAKLTGPVDTDD+F S + I+TAAEF GLNTLGLSISRTDLGTDAIVSPHSHPRATE+
Sbjct: 61  FNSAKLTGPVDTDDQFISSVNILTAAEFSGLNTLGLSISRTDLGTDAIVSPHSHPRATEI 120

Query: 121 FFVNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPG 180
           FFVNQGIVLAGFLDTKNRLFQSFLK GDV+VFPKGLLHFCLNSGYE A IFSV+NSQNPG
Sbjct: 121 FFVNQGIVLAGFLDTKNRLFQSFLKAGDVMVFPKGLLHFCLNSGYEPAIIFSVFNSQNPG 180

Query: 181 VVNVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           VVN+NGAMFEPAD++H + KFLE+LK++SSLS LKFNPNVTL  Y+SL
Sbjct: 181 VVNINGAMFEPADSNHLVHKFLERLKSLSSLSSLKFNPNVTLTTYISL 228

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BLAST of Sed0005049 vs. ExPASy Swiss-Prot
Match: Q9FLT3 (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.3e-52
Identity = 101/177 (57.06%), Postives = 128/177 (72.32%), Query Frame = 0


Query: 7   IFLLLFVLLSCLGISVADSNNIFDSCPTATNRTD--FINGFPCKNPTIVSTSDFNSAKLT 66
           +F  +F+ +S       DS+N+ D+CPTA       FING+PCKNPT ++  DF S KLT
Sbjct: 8   VFCAIFLSVS------GDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLT 67

Query: 67  GPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGI 126
              DTD+   S + ++TA EFPGLNTLGLS+SRTDL  D  V  HSHPR++EM FV +G+
Sbjct: 68  EAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGV 127

Query: 127 VLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNV 182
           V AGF+DT N++FQ+ L+ GDV VFPKGLLHFCL+ G+E AT FS YNSQNPGVVN+
Sbjct: 128 VFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178

[Close]

BLAST of Sed0005049 vs. ExPASy Swiss-Prot
Match: Q2R352 (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0537350 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.6e-45
Identity = 89/169 (52.66%), Postives = 113/169 (66.86%), Query Frame = 0


Query: 22  VADSNNIFDSCPTAT--NRTDFINGFPCKNPTIVSTSDFNSAKLTGPVDTDDRFSSLLKI 81
           ++DS  + D CP A    R  F+NGF CK+P+ +  SDF +  L    D D+   S   I
Sbjct: 22  ISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANI 81

Query: 82  VTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFLDTKNRLFQS 141
           +TA EFPGLNTLG+S++RTD+     V PHSHPRA+EM FV+ G V+AGF DTK +LFQ 
Sbjct: 82  ITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQK 141

Query: 142 FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEP 189
            L  GDV +FP+GL+HF +N G+  AT FSV NSQNPGVV +  AMF P
Sbjct: 142 TLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAP 190

[Close]

BLAST of Sed0005049 vs. ExPASy Swiss-Prot
Match: P94014 (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana OX=3702 GN=GLP4 PE=2 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-32
Identity = 76/186 (40.86%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MKKPSSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNS 60
           M  P+   LLL   +S    S AD + + D C         INGFPCK+   V+++DF S
Sbjct: 1   MASPTLTLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFS 60

Query: 61  AKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFV 120
             L  P  T++ F +L+        PGLNTLG+S+SR D     +  PH+HPRATE+ FV
Sbjct: 61  QGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFV 120

Query: 121 NQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVN 180
            +G +  GFL T N+L    LK GDV  FPKGL+HF  N+G   A++ + +NSQ PG  +
Sbjct: 121 LEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQS 180

Query: 181 VNGAMF 187
           +   +F
Sbjct: 181 LGATLF 186

[Close]

BLAST of Sed0005049 vs. ExPASy Swiss-Prot
Match: Q9S8P4 (Rhicadhesin receptor OS=Pisum sativum OX=3888 GN=GER1 PE=1 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-31
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 9   LLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNSAKLTGPVD 68
           LLL VL +    + AD++ + D C         +NGF CK  + V+  DF S  L     
Sbjct: 7   LLLVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGA 66

Query: 69  TDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAG 128
           T++ F SL+        PGLNTLG+S++R D     +  PH+HPRATEM FV +G +  G
Sbjct: 67  TNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMVFVLEGQLDVG 126

Query: 129 FLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 187
           F+ T N+L    +  G+  VFPKGL+HF  N+G+E AT+ + +NSQ PG VN+   +F
Sbjct: 127 FITTTNQLIAKTIAKGETFVFPKGLVHFQKNNGWEPATVIAGFNSQLPGTVNIPLTLF 184

[Close]

BLAST of Sed0005049 vs. ExPASy Swiss-Prot
Match: P45852 (Germin-like protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.2e-31
Identity = 73/179 (40.78%), Postives = 96/179 (53.63%), Query Frame = 0


Query: 24  DSNNIFDSCPTATNRTD--FINGFPCKNPTIVSTSDFNSAKLTGPVDTDDRFSSLLKIVT 83
           D   + D C       D  F+NG  CK+P  V+  DF    L  P +TD+       +VT
Sbjct: 24  DPTQLQDFCVGVNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVT 83

Query: 84  AAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLAGFL-----DTKNRL 143
           AA  PGLNTLG+S++R D     +  PH+HPRATE+F V +G    GF+     D  N+L
Sbjct: 84  AANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKL 143

Query: 144 FQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMFEPADTSHFL 196
           F   L  GDV VFP+GL+HF LN G       S  +SQNPGV+ +  A+F P   S  +
Sbjct: 144 FAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLM 202

[Close]

BLAST of Sed0005049 vs. ExPASy TrEMBL
Match: A0A6J1GAI2 (Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.7e-109
Identity = 196/226 (86.73%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL V  SCLGISVADS+N+FDSCPTAT+R DFINGFPCKNPTIV T DF 
Sbjct: 1   MNKPSSSLIFLLVVFFSCLGISVADSHNVFDSCPTATDRIDFINGFPCKNPTIVRTDDFT 60

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAIVSPHSHPRATEMFF
Sbjct: 61  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFF 120

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 121 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMF+PAD+SHF+DKFL+KLKA+SSL +LKFNPNVTLPRY+SL
Sbjct: 181 NVNGAMFKPADSSHFIDKFLDKLKALSSLPNLKFNPNVTLPRYISL 226

[Close]

BLAST of Sed0005049 vs. ExPASy TrEMBL
Match: A0A6J1KCN7 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.3e-108
Identity = 193/226 (85.40%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 1   MKKP-SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFN 60
           M KP SS+  LL V  SCLGI+VADS+N+FDSCPTAT+R DF+NGFPCKNPT+V T DF 
Sbjct: 1   MNKPSSSLIFLLLVFFSCLGIAVADSHNVFDSCPTATDRIDFVNGFPCKNPTVVRTDDFT 60

Query: 61  SAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFF 120
           SAKLTGPV+TDDRFSSL+K+VTAA+FPGLN+LGLSISRTDLGTDAIVSPHSHPRATEMFF
Sbjct: 61  SAKLTGPVNTDDRFSSLVKVVTAADFPGLNSLGLSISRTDLGTDAIVSPHSHPRATEMFF 120

Query: 121 VNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180
           VNQGIVLAGF+DTKNRLFQ FLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV
Sbjct: 121 VNQGIVLAGFIDTKNRLFQEFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVV 180

Query: 181 NVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           NVNGAMFEPAD+SHF+D FL+KLKA+SSL +LKFNPNVTLPRY+SL
Sbjct: 181 NVNGAMFEPADSSHFIDMFLDKLKALSSLPNLKFNPNVTLPRYISL 226

[Close]

BLAST of Sed0005049 vs. ExPASy TrEMBL
Match: A0A6J1DJ19 (Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.6e-105
Identity = 192/228 (84.21%), Postives = 212/228 (92.98%), Query Frame = 0


Query: 1   MKKPSS---IFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSD 60
           MKKPSS   IFLLLFVL SCLGISVADSNN+FD+CPTATN+++FINGFPCKNPTIV+TSD
Sbjct: 1   MKKPSSSSLIFLLLFVLFSCLGISVADSNNVFDTCPTATNKSEFINGFPCKNPTIVTTSD 60

Query: 61  FNSAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEM 120
           FNSAKLTGPVDTDD+F S + I+TAAEF GLNTLGLSISRTDLGTDAIVSPHSHPRATE+
Sbjct: 61  FNSAKLTGPVDTDDQFISSVNILTAAEFSGLNTLGLSISRTDLGTDAIVSPHSHPRATEI 120

Query: 121 FFVNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPG 180
           FFVNQGIVLAGFLDTKNRLFQSFLK GDV+VFPKGLLHFCLNSGYE A IFSV+NSQNPG
Sbjct: 121 FFVNQGIVLAGFLDTKNRLFQSFLKAGDVMVFPKGLLHFCLNSGYEPAIIFSVFNSQNPG 180

Query: 181 VVNVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           VVN+NGAMFEPAD++H + KFLE+LK++SSLS LKFNPNVTL  Y+SL
Sbjct: 181 VVNINGAMFEPADSNHLVHKFLERLKSLSSLSSLKFNPNVTLTTYISL 228

[Close]

BLAST of Sed0005049 vs. ExPASy TrEMBL
Match: A0A5D3DCK1 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00230 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.0e-93
Identity = 173/229 (75.55%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   MKKP----SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTS 60
           MK P    S IFLLLFVL SCLGIS+ADSNN+FD+CPTAT+R +FING+ CK+PT+V+TS
Sbjct: 1   MKNPSLASSLIFLLLFVLFSCLGISLADSNNVFDTCPTATDRIEFINGYHCKSPTLVTTS 60

Query: 61  DFNSAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATE 120
           DFNSAKLT PV+TDDR + ++KIVTAA+F GLNTLGLSISRTDL  DAIVSPHSHPRATE
Sbjct: 61  DFNSAKLTEPVNTDDRINLVVKIVTAADFHGLNTLGLSISRTDLVIDAIVSPHSHPRATE 120

Query: 121 MFFVNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNP 180
           MFF+NQGIVLAGF+DT+N+LFQ+ LK GDVIVFPKGLLHFCLNSGYE A  FSVYNSQNP
Sbjct: 121 MFFLNQGIVLAGFIDTRNQLFQTILKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNP 180

Query: 181 GVVNVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           GVVN+NGA+F+PAD+SHF++KFL++L   SS S+ K NPNVTL RY SL
Sbjct: 181 GVVNINGAVFDPADSSHFIEKFLKRLTVPSSQSNFKLNPNVTLSRYTSL 229

[Close]

BLAST of Sed0005049 vs. ExPASy TrEMBL
Match: A0A1S3CNX7 (Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.0e-93
Identity = 173/229 (75.55%), Postives = 201/229 (87.77%), Query Frame = 0


Query: 1   MKKP----SSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTS 60
           MK P    S IFLLLFVL SCLGIS+ADSNN+FD+CPTAT+R +FING+ CK+PT+V+TS
Sbjct: 1   MKNPSLASSLIFLLLFVLFSCLGISLADSNNVFDTCPTATDRIEFINGYHCKSPTLVTTS 60

Query: 61  DFNSAKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATE 120
           DFNSAKLT PV+TDDR + ++KIVTAA+F GLNTLGLSISRTDL  DAIVSPHSHPRATE
Sbjct: 61  DFNSAKLTEPVNTDDRINLVVKIVTAADFHGLNTLGLSISRTDLVIDAIVSPHSHPRATE 120

Query: 121 MFFVNQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNP 180
           MFF+NQGIVLAGF+DT+N+LFQ+ LK GDVIVFPKGLLHFCLNSGYE A  FSVYNSQNP
Sbjct: 121 MFFLNQGIVLAGFIDTRNQLFQTILKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNP 180

Query: 181 GVVNVNGAMFEPADTSHFLDKFLEKLKAVSSLSDLKFNPNVTLPRYVSL 226
           GVVN+NGA+F+PAD+SHF++KFL++L   SS S+ K NPNVTL RY SL
Sbjct: 181 GVVNINGAVFDPADSSHFIEKFLKRLTVPSSQSNFKLNPNVTLSRYTSL 229

[Close]

BLAST of Sed0005049 vs. TAIR 10
Match: AT5G61750.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 205.3 bits (521), Expect = 5.2e-53
Identity = 101/177 (57.06%), Postives = 128/177 (72.32%), Query Frame = 0


Query: 7   IFLLLFVLLSCLGISVADSNNIFDSCPTATNRTD--FINGFPCKNPTIVSTSDFNSAKLT 66
           +F  +F+ +S       DS+N+ D+CPTA       FING+PCKNPT ++  DF S KLT
Sbjct: 8   VFCAIFLSVS------GDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLT 67

Query: 67  GPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGI 126
              DTD+   S + ++TA EFPGLNTLGLS+SRTDL  D  V  HSHPR++EM FV +G+
Sbjct: 68  EAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGV 127

Query: 127 VLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNV 182
           V AGF+DT N++FQ+ L+ GDV VFPKGLLHFCL+ G+E AT FS YNSQNPGVVN+
Sbjct: 128 VFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178

[Close]

BLAST of Sed0005049 vs. TAIR 10
Match: AT1G09560.1 (germin-like protein 5 )

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-33
Identity = 76/186 (40.86%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MKKPSSIFLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNS 60
           M  P+   LLL   +S    S AD + + D C         INGFPCK+   V+++DF S
Sbjct: 1   MASPTLTLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFS 60

Query: 61  AKLTGPVDTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFV 120
             L  P  T++ F +L+        PGLNTLG+S+SR D     +  PH+HPRATE+ FV
Sbjct: 61  QGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFV 120

Query: 121 NQGIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVN 180
            +G +  GFL T N+L    LK GDV  FPKGL+HF  N+G   A++ + +NSQ PG  +
Sbjct: 121 LEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQS 180

Query: 181 VNGAMF 187
           +   +F
Sbjct: 181 LGATLF 186

[Close]

BLAST of Sed0005049 vs. TAIR 10
Match: AT1G02335.1 (germin-like protein subfamily 2 member 2 precursor )

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-30
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 11  LFVLLSCL---GISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNSAKLTGPV 70
           + + LSC+    I   D + + D C    +    +NGFPCK    ++ SDF  A ++ P 
Sbjct: 8   IIIALSCIMITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPA 67

Query: 71  DTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLA 130
             +    S +      + PGLNTL +S++R D     +  PH+HPRATE+ +V +G +  
Sbjct: 68  VINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEV 127

Query: 131 GFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF- 190
           GF+ T N+LF   +K G+V VFP+GL+HF  N+G   A++ S +NSQ PG  +V   +F 
Sbjct: 128 GFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFA 187

Query: 191 -EPADTSHFLDK 198
            EPA     L K
Sbjct: 188 AEPALPEDVLTK 199

[Close]

BLAST of Sed0005049 vs. TAIR 10
Match: AT1G10460.1 (germin-like protein 7 )

HSP 1 Score: 129.0 bits (323), Expect = 4.7e-30
Identity = 72/185 (38.92%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 7   IFLLLFVLLSCLGISVADSNNIFDSC---PTATNRTDFINGFPCKNPTIVSTSDFNSAKL 66
           I  +L  L   +G   +D + + D C   P ++++  F+NG  CK+PT  S SDF+++ L
Sbjct: 2   ILNILLTLTLLMGRVKSDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSAL 61

Query: 67  TGPVDTDDR-FSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQ 126
           + P +T  + F   + + T A  PGLNT+GL+++R D G   +V PH HPRA+E+     
Sbjct: 62  SRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLD 121

Query: 127 GIVLAGFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLN-SGYETATIFSVYNSQNPGVVNV 186
           G++L GF+DT  R+F   L PG+  VFPKGL+HF  N     +A   S  +SQNPG   V
Sbjct: 122 GVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIV 181

[Close]

BLAST of Sed0005049 vs. TAIR 10
Match: AT1G18970.1 (germin-like protein 4 )

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-30
Identity = 73/179 (40.78%), Postives = 99/179 (55.31%), Query Frame = 0


Query: 8   FLLLFVLLSCLGISVADSNNIFDSCPTATNRTDFINGFPCKNPTIVSTSDFNSAKLTGPV 67
           FLL+F L     +S +DS+ + D C      +  INGFPCK  + VS SDF  + L GP+
Sbjct: 14  FLLMFCLFVIPSLS-SDSDPLQDFCVGDLKASASINGFPCK--SAVSASDFFYSGLGGPL 73

Query: 68  DTDDRFSSLLKIVTAAEFPGLNTLGLSISRTDLGTDAIVSPHSHPRATEMFFVNQGIVLA 127
           DT +     +       FPGLNTLG+S++  +L    +  PH HPRATE+  V +G V  
Sbjct: 74  DTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFV 133

Query: 128 GFLDTKNRLFQSFLKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 187
           GFL T N LF   L  G+  V P+GL+HF  N G   A + + +NSQ PG V +   +F
Sbjct: 134 GFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLF 189

The following BLAST results are available for this feature:

BLAST of Sed0005049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606852.1	1.3e-109	87.61	Germin-like protein subfamily 3 member 4, partial [Cucurbita argyrosperma subsp....	[more]
XP_023522282.1	2.1e-109	87.17	germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022948659.1	1.4e-108	86.73	germin-like protein subfamily 3 member 4 [Cucurbita moschata] >XP_022948660.1 ge...	[more]
XP_022998490.1	6.9e-108	85.40	germin-like protein subfamily 3 member 4 [Cucurbita maxima]	[more]
XP_022153439.1	5.4e-105	84.21	germin-like protein subfamily 3 member 4 [Momordica charantia]	[more]

BLAST of Sed0005049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLT3	7.3e-52	57.06	Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q2R352	6.6e-45	52.66	Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g053735...	[more]
P94014	2.2e-32	40.86	Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana OX=3702 GN=GLP4...	[more]
Q9S8P4	7.1e-31	40.45	Rhicadhesin receptor OS=Pisum sativum OX=3888 GN=GER1 PE=1 SV=2	[more]
P45852	9.2e-31	40.78	Germin-like protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]

BLAST of Sed0005049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAI2	6.7e-109	86.73	Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1	[more]
A0A6J1KCN7	3.3e-108	85.40	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1	[more]
A0A6J1DJ19	2.6e-105	84.21	Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1	[more]
A0A5D3DCK1	1.0e-93	75.55	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199...	[more]
A0A1S3CNX7	1.0e-93	75.55	Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1	[more]

BLAST of Sed0005049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61750.1	5.2e-53	57.06	RmlC-like cupins superfamily protein	[more]
AT1G09560.1	1.6e-33	40.86	germin-like protein 5	[more]
AT1G02335.1	1.6e-30	36.46	germin-like protein subfamily 2 member 2 precursor	[more]
AT1G10460.1	4.7e-30	38.92	germin-like protein 7	[more]
AT1G18970.1	6.1e-30	40.78	germin-like protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 139..159 score: 51.38 coord: 109..129 score: 53.38 coord: 172..187 score: 41.42
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 74..187 e-value: 3.4E-19 score: 79.8
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 76..184 e-value: 3.7E-29 score: 101.3
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 23..212 e-value: 1.7E-52 score: 179.7
None	No IPR available	PANTHER	PTHR31238	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3	coord: 11..203
None	No IPR available	PANTHER	PTHR31238:SF3	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4	coord: 11..203
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..17 score: 6.0
None	No IPR available	CDD	cd02241	cupin_OxOx	coord: 24..197 e-value: 9.64238E-61 score: 187.033
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 54..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005049.1	Sed0005049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0048046	apoplast
molecular_function	GO:0030145	manganese ion binding